BAC Information

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BAC

Clone NameB6Ng01-018B07
Chromosome16 (Build37)
Map Location 90,304,000 - 90,523,584
singlet/doubletdoublet
Overlap geneLOC545175, Hunk
Upstream geneLOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018B07.bB6Ng01-018B07.g
ACCDH851580DH851581
length681173
definitionDH851580|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B07, 5' end.DH851581|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,304,000 - 90,304,679)(90,523,412 - 90,523,584)
sequence
gaattctaccccactatgcaatgcaccccacatgtggattcatctagtga
tgttctcaggctctgaagtgggtgagcacagctgctgcactcccattacc
ccggctctcctcgtgcacaacacgatgacagggcgctggggaatgaatgt
gtgaccctcctcctgagttcagatggtgcaactgacccccttcctcagat
ggcatgaggaggtgaggagggcatgaaagagaagcccttgtgaatgtgaa
tgatatgcgtgtccctataaaagggccttggggagtactctcattcctct
tccaccatgtgtagatattcttagaagccagctgtcatcagaactgaatg
ctccaccaccctgaactaggacttctagtctctagagttataagagataa
gtctttggtattgcggtggtatgtgtgtgtgttcatatgtgcttgtgtgg
agttcagaggtcaaccctgggtatttttccatatatatatatggtggaaa
aatatattatatatagtatacacacatatatataatatacaatatatatt
tcccactatatatatataaatatatttaaatatacactgagggtccatat
ttctgtatatatataatgggaaaatatatattctccacatatatatatgg
tggaatatattatttatatatatatatttat
cattatttcctcagtggggctcagtggccaccagttgctgccactaaagc
tctggctgtgtcccagatctatcagctcctgagggttggggatcgagacc
tgggtggctgttatccattcactgtggaccaaagatacacagcacatgtg
tataaccgggggtgggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90304000_90304679
seq2: B6Ng01-018B07.b_45_725

seq1  GAATTCTACCCCACTATGCAATGCACCCCACATGTGGATTCATCTAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCCACTATGCAATGCACCCCACATGTGGATTCATCTAGTGA  50

seq1  TGTTCTCAGGCTCTGAAGTGGGTGAGCACAGCTGCTGCACTCCCATTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGGCTCTGAAGTGGGTGAGCACAGCTGCTGCACTCCCATTACC  100

seq1  CCGGCTCTCCTCGTGCACAACACGATGACAGGGCGCTGGGGAATGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCTCCTCGTGCACAACACGATGACAGGGCGCTGGGGAATGAATGT  150

seq1  GTGACCCTCCTCCTGAGTTCAGATGGTGCAACTGACCCCCTTCCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTCCTCCTGAGTTCAGATGGTGCAACTGACCCCCTTCCTCAGAT  200

seq1  GGCATGAGGAGGTGAGGAGGGCATGAAAGAGAAGCCCTTGTGAATGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGGAGGTGAGGAGGGCATGAAAGAGAAGCCCTTGTGAATGTGAA  250

seq1  TGATATGCGTGTCCCTATAAAAGGGCCTTGGGGAGTACTCTCATTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGCGTGTCCCTATAAAAGGGCCTTGGGGAGTACTCTCATTCCTCT  300

seq1  TCCACCATGTGTAGATATTCTTAGAAGCCAGCTGTCATCAGAACTGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGTGTAGATATTCTTAGAAGCCAGCTGTCATCAGAACTGAATG  350

seq1  CTCCACCACCCTGAACTAGGACTTCTAGTCTCTAGAGTTATAAGAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCACCCTGAACTAGGACTTCTAGTCTCTAGAGTTATAAGAGATAA  400

seq1  GTCTTTGGTATTGCGGTGGTATGTGTGTGTGTTCATATGTGCTTGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGTATTGCGGTGGTATGTGTGTGTGTTCATATGTGCTTGTGTGG  450

seq1  AGTTCAGAGGTCAACCCTGGGTATTTTTCCATATATATATATGGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGGTCAACCCTGGGTATTTTTCCATATATATATATGGTGGAAA  500

seq1  AATATATTATATATAGTATACACACATATATATAATATACAATATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATATATAGTATACACACATATATATAATATACAATATATATT  550

seq1  TCCCACTATATATATATAAATATA-TTAAATATACACTGAGGGTCCATAT  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCACTATATATATATAAATATATTTAAATATACACTGAGGGTCCATAT  600

seq1  TTCTGTATATATATAATGGGAAAATATATATTCTCCACATATATATATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATATATATAATGGGAAAATATATATTCTCCACATATATATATGG  650

seq1  TGGAATATATTATATATATATATATATATAT  680
      ||||||||||||| ||||||||||||| |||
seq2  TGGAATATATTATTTATATATATATATTTAT  681

seq1: chr16_90523412_90523584
seq2: B6Ng01-018B07.g_73_245 (reverse)

seq1  CCACCCCCCCACCCCCGGTTATACACATGTGCTGTGTATCTTTGGTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCACCCCCGGTTATACACATGTGCTGTGTATCTTTGGTCCAC  50

seq1  AGTGAATGGATAACAGCCACCCAGGTCTCGATCCCCAACCCTCAGGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGATAACAGCCACCCAGGTCTCGATCCCCAACCCTCAGGAGCT  100

seq1  GATAGATCTGGGACACAGCCAGAGCTTTAGTGGCAGCAACTGGTGGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATCTGGGACACAGCCAGAGCTTTAGTGGCAGCAACTGGTGGCCAC  150

seq1  TGAGCCCCACTGAGGAAATAATG  173
      |||||||||||||||||||||||
seq2  TGAGCCCCACTGAGGAAATAATG  173