BAC Information

Click to search

BAC

Clone NameB6Ng01-018L24
Chromosome16 (Build37)18 (Build37)
Map Location 66,736,258 - 66,737,43160,599,978 - 60,600,215
singlet/doubletsingletsinglet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L24.bB6Ng01-018L24.g
ACCDH852063DH852064
length1,155594
definitionDH852063|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L24, 5' end.DH852064|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,736,258 - 66,737,431)(60,599,978 - 60,600,215)
sequence
gaattccaggaatcattaaaatttaaatatgcaaacccaatttactgaat
aatagtatgcatatatttcagtggtatacaatataatgtgctatgtacta
tgtaaataaatatttaaaatttaaaaataaaggaagtgtctctatcattc
aacacatataacacagtaaacacagaggtttcctttaaagaaacattgta
tcatgttcattgataggaaactaaaaaaaaaagtttaaagtcataaaaat
ttgatttatgagtttgtgtgcccatctacccattgtgaggaatttaaaat
aatattgtataaaataaaaattctgaagcattttaagaactccagacaaa
cccctgtatctgggctactaagcaatagtgcagacacttttgaagtaagt
tccaagtgtcactcataaggccaatgctgacttccaaataaatacattct
catttataatattctattacaacctacttacacacatgaagaattatgtt
agctcaggtactcagaaacttctgtgtggaagagcatcgtgaagcttgtt
ttataataaatacatcagtctattatcactccttcttagttctaaaaact
gtgctcagaactccatgccatgcccactgtgtagatgccctcaatcaagg
actggagggcctcagaggttacatgctcggtgcctttacttcatttccca
ttataccagttttagatcagaaagaactctgagttggacacacaaaagga
catctgctcctgcctcacgtgccttcttcaagatccagatccaactattt
gtactctctgtgctgtcatcttctcgccatttcagtctgcttcgcagcat
catcttttttcatgtgtgtctgtcaagtccctttcaatactcctatacat
attcttccattctgaaactagttcatgtttccttctctatctgcaaacgc
ttttcaggactctgtatctgtttactatacattaccatccattttgtttt
ccaactcacacacacaccaccttagccttacaaaaaaaattattgttctt
ctttgttcacaaatacaggtccaccacccgcacgaccatctgtttcccgg
aacaatacctcaccatgcaagtctcgaaatataatcacgtccatttgcat
cactg
gaattcacatttgttttccaagcatattttgatcttatctgacaaagaag
aaaaccatgacaaatcagaacaatgttgtttgtgaataaactttttttta
ttaagtttagaagaggcaatgtttctgctagtaaactatagagacgtttg
tggggaattgcaggctggtatccagtcgagctgaggtctgaaccttgctg
gtcataactgacctacactacacacacagtaggcgtttcctcatgctcct
ggaactctggcccctgtctaaggtaccacctcccacagcccccacaagag
aagcatggtcagtagtcacataagcaatggcccaagcttctgaccatcag
gctaaactcctccccagttacctagcaacagtgaagaccataaaaggggc
tgttaggcccccaccttgctctctaactcttactcctctgttcctttacc
tctcacttctctcaccctctctttgggttttctcctccctttctctttct
ctttgtcttctcttctctcctctcctttctcctctctctttttagttttc
ctctctctctctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66736258_66737431
seq2: B6Ng01-018L24.b_44_1198

seq1  GAATTCCAGGAATCATTAAAATTTAAATATGCAAACCCAATTTACTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAATCATTAAAATTTAAATATGCAAACCCAATTTACTGAAT  50

seq1  AATAGTATGCATATATTTCAGTGGTATACAATATAATGTGCTATGTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGCATATATTTCAGTGGTATACAATATAATGTGCTATGTACTA  100

seq1  TGTAAATAAATATTTAAAATTTAAAAATAAAGGAAGTGTCTCTATCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAAATATTTAAAATTTAAAAATAAAGGAAGTGTCTCTATCATTC  150

seq1  AACACATATAACACAGTAAACACAGAGGTTTCCTTTAAAGAAACATTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATAACACAGTAAACACAGAGGTTTCCTTTAAAGAAACATTGTA  200

seq1  TCATGTTCATTGATAGGAAACTAAAAAAAAAAGTTTAAAGTCATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCATTGATAGGAAACTAAAAAAAAAAGTTTAAAGTCATAAAAAT  250

seq1  TTGATTTATGAGTTTGTGTGCCCATCTACCCATTGTGAGGAATTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATGAGTTTGTGTGCCCATCTACCCATTGTGAGGAATTTAAAAT  300

seq1  AATATTGTATAAAATAAAAATTCTGAAGCATTTTAAGAACTCCAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTATAAAATAAAAATTCTGAAGCATTTTAAGAACTCCAGACAAA  350

seq1  CCCCTGTATCTGGGCTACTAAGCAATAGTGCAGACACTTTTGAAGTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTATCTGGGCTACTAAGCAATAGTGCAGACACTTTTGAAGTAAGT  400

seq1  TCCAAGTGTCACTCATAAGGCCAATGCTGACTTCCAAATAAATACATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGTCACTCATAAGGCCAATGCTGACTTCCAAATAAATACATTCT  450

seq1  CATTTATAATATTCTATTACAACCTACTTACACACATGAAGAATTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAATATTCTATTACAACCTACTTACACACATGAAGAATTATGTT  500

seq1  AGCTCAGGTACTCAGAAACTTCTGTGTGGAAGAGCATCGTGAAGCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGTACTCAGAAACTTCTGTGTGGAAGAGCATCGTGAAGCTTGTT  550

seq1  TTATAATAAATACATCAGTCTATTATCACTCCTTCTTAGTTCTAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAAATACATCAGTCTATTATCACTCCTTCTTAGTTCTAAAAACT  600

seq1  GTGCTCAGAACTCCATGCCATGCCCACTGTGTAGATGCCCTCAATCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGAACTCCATGCCATGCCCACTGTGTAGATGCCCTCAATCAAGG  650

seq1  ACTGGAGGGCCTCAGAGGTTACATGCTCGGTGCCTTTACTTCATTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGGCCTCAGAGGTTACATGCTCGGTGCCTTTACTTCATTTCCCA  700

seq1  TTATACCAGTTTTAGATCAGAAAGAACTCTGAGTTGGACACACAAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAGTTTTAGATCAGAAAGAACTCTGAGTTGGACACACAAAAGGA  750

seq1  CATCTGCTCCTGCCTCACGTGCCTTCTTCAAGATCCAGATCCAACTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCCTGCCTCACGTGCCTTCTTCAAGATCCAGATCCAACTATTT  800

seq1  GTACTCTCTGTGCTGTCATCTTCTCGCCATTTCAGTCTGCTTCGCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCTGTGCTGTCATCTTCTCGCCATTTCAGTCTGCTTCGCAGCAT  850

seq1  CATC-TTTTTCATGTGTGTCTGTCAAGTCCCTTTCAATACTCCTATACAT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTCATGTGTGTCTGTCAAGTCCCTTTCAATACTCCTATACAT  900

seq1  ATTCTTCCATTCTGAAACTAGTTCATGTTTCCTTCTCTATCTGCAAACGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCATTCTGAAACTAGTTCATGTTTCCTTCTCTATCTGCAAACGC  950

seq1  TTTTCAGGAACTCTGTATCTGTTTACTATACATTACCATCCATTTTGTTT  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGG-ACTCTGTATCTGTTTACTATACATTACCATCCATTTTGTTT  999

seq1  TCCAACTCACACCACCAACCACCACCTTAGCCTTACAAAAAAAAATTATG  1049
      |||||||||||    ||  ||||||||||||||||||||||||| |  ||
seq2  TCCAACTCACA----CACACACCACCTTAGCCTTACAAAAAAAATTATTG  1045

seq1  -TCTTCTTTGTTCACAAATACAGTCCCACCACCCGCACGGACACATCTGT  1098
       ||||||||||||||||||||||  ||||||||||||| ||| |||||||
seq2  TTCTTCTTTGTTCACAAATACAGGTCCACCACCCGCAC-GAC-CATCTGT  1093

seq1  TCCCCGGACCAATACACTCAACCCAATTGCAAGTCTCAGAAATATATAAT  1148
      | |||||| |||||| ||||  |||  |||||||||| |||||     ||
seq2  TTCCCGGAACAATAC-CTCA--CCA--TGCAAGTCTC-GAAAT-----AT  1132

seq1  ATTCACCTGTCATTTGCAATTCACTG  1174
      | |||| |  ||||||||  ||||||
seq2  AATCACGT-CCATTTGCA--TCACTG  1155

seq1: chr18_60599978_60600215
seq2: B6Ng01-018L24.g_219_460 (reverse)

seq1  TTTTATAGGCTTCACTGTTGCTAGGTAACTGGGGAGGAGTTTAGCCTGTA  50
      |||||| | |||||||||||||||||||||||||||||||||||||||  
seq2  TTTTATGGTCTTCACTGTTGCTAGGTAACTGGGGAGGAGTTTAGCCTGAT  50

seq1  CATCAGAAGCTTGAGCCATTGCTTACATGACTACTGACCATGCTTTTCTT  100
        ||||||||||| |||||||||||  |||||||||||||||||| ||||
seq2  GGTCAGAAGCTTGGGCCATTGCTTATGTGACTACTGACCATGCTTCTCTT  100

seq1  GTGGGGGCTGTGGGAGGTGGTACCTTAGGCATGGGCCATAGTTCCAGGAG  150
      |||||||||||||||||||||||||||| || |||||| |||||||||||
seq2  GTGGGGGCTGTGGGAGGTGGTACCTTAGACAGGGGCCAGAGTTCCAGGAG  150

seq1  CATGAGGGAATGCCTAC----CATGTCATGTAGGTGAATTATGACCATCG  196
      ||||||| || ||||||      |||  ||||||| | ||||||||| | 
seq2  CATGAGGAAACGCCTACTGTGTGTGTAGTGTAGGTCAGTTATGACCAGCA  200

seq1  GGGTTCAGACCTCAGCTCGACTGGAGACCAGCCTGCAATTCC  238
       |||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTTCAGACCTCAGCTCGACTGGATACCAGCCTGCAATTCC  242