BAC Information

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BAC

Clone NameB6Ng01-018O12
Chromosome16 (Build37)
Map Location 36,239,910 - 36,421,944
singlet/doubletdoublet
Overlap gene2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2
Upstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196
Downstream geneStfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018O12.bB6Ng01-018O12.g
ACCDH852168DH852169
length1,047354
definitionDH852168|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O12, 5' end.DH852169|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,239,910 - 36,240,955)(36,421,591 - 36,421,944)
sequence
gaattcttccccccatcttcattccccttcacctttgagagggtggccct
ccgttgggtatgcccctaccatgaggcatcaagtctttacaggatgagac
ccatcctctcccactgaggccagacaaggcatccctctgctacatatgtg
cctgggggcttggaccagcccttctatgctatttggttgagtctcagtct
ctggaagctcccaggggtccaggttagttgacactgttggtcttcctgtg
gggttgacatccccttaagttgcttctatcctttccccaactcttccatt
ggaatccctgacttctgtcccatgtttgcctctttttatctgtgcctgtc
tcagccagctggtggataaagtcttgacttgaactttatacttgatggct
tcaaatttttcatatatctcattgctttcttttctcttcaagcagtggtc
tgatcttatgaggagaaagtgagagatgttacggctgtgttgactcatct
tacctgagtcacaaatctgggaacctcatcctgctgagagtcctcagaga
tgctgatgtgccttagctggctactcaagcctctagcctctaatttcaga
acttggaagaatgaggcaggaaaatgttattcaagaatgttattcagctt
gaggtatatagaaagttccaggctacttggggttacctattgagtcctgc
ttcaaatatcaaaacacacacacacacacacacacacacacacacacacg
aaagaatgcaaaaccaaatatagtcatgatttgcaatgagggctccaatg
ggtatgtctatatttgatcagtttacaaagtaaacagcatttagtagagt
ttttctctgggcttcttcaaataactctagggatacagtaacccccctct
ggtctgacactgtgtggagaccccactgaccatagtcttggaggagtaga
ttttcctgactaaatttccttgatacaacaggggctttccgtatttatct
tcaccttggtgtctttgaaggggaattattgctgtgattgggaaata
taggacagcctggggtacaagcatgcgcttctaaaaaatatttaatcacc
cgacatgttggctcatgtctttaatcccagcacttggaactcagaggaag
ggagatccttggagtgcgagaccagcctgatctacagagtttgttccagc
acagccagaaaaacctagactcacaaaacaaaacaaaataagaacaagaa
caacatcaataaaaatccaagaaaatcaacagcagcagaagaaatagatg
tgtttgccatgtgactcttcatgagtgaacataagcattgaaactgccag
taaaaacccactgtagacagggactgtgtgtttgggggggggcgttgttt
ggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36239910_36240955
seq2: B6Ng01-018O12.b_45_1091

seq1  GAATTCTTCCCCCCATCTTCATTCCCCTTCACCTTTGAGAGGGTGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCCCATCTTCATTCCCCTTCACCTTTGAGAGGGTGGCCCT  50

seq1  CCGTTGGGTATGCCCCTACCATGAGGCATCAAGTCTTTACAGGATGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGGTATGCCCCTACCATGAGGCATCAAGTCTTTACAGGATGAGAC  100

seq1  CCATCCTCTCCCACTGAGGCCAGACAAGGCATCCCTCTGCTACATATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCTCCCACTGAGGCCAGACAAGGCATCCCTCTGCTACATATGTG  150

seq1  CCTGGGGGCTTGGACCAGCCCTTCTATGCTATTTGGTTGAGTCTCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGCTTGGACCAGCCCTTCTATGCTATTTGGTTGAGTCTCAGTCT  200

seq1  CTGGAAGCTCCCAGGGGTCCAGGTTAGTTGACACTGTTGGTCTTCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCTCCCAGGGGTCCAGGTTAGTTGACACTGTTGGTCTTCCTGTG  250

seq1  GGGTTGACATCCCCTTAAGTTGCTTCTATCCTTTCCCCAACTCTTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGACATCCCCTTAAGTTGCTTCTATCCTTTCCCCAACTCTTCCATT  300

seq1  GGAATCCCTGACTTCTGTCCCATGTTTGCCTCTTTTTATCTGTGCCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCTGACTTCTGTCCCATGTTTGCCTCTTTTTATCTGTGCCTGTC  350

seq1  TCAGCCAGCTGGTGGATAAAGTCTTGACTTGAACTTTATACTTGATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGCTGGTGGATAAAGTCTTGACTTGAACTTTATACTTGATGGCT  400

seq1  TCAAATTTTTCATATATCTCATTGCTTTCTTTTCTCTTCAAGCAGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTTCATATATCTCATTGCTTTCTTTTCTCTTCAAGCAGTGGTC  450

seq1  TGATCTTATGAGGAGAAAGTGAGAGATGTTACGGCTGTGTTGACTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTATGAGGAGAAAGTGAGAGATGTTACGGCTGTGTTGACTCATCT  500

seq1  TACCTGAGTCACAAATCTGGGAACCTCATCCTGCTGAGAGTCCTCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGTCACAAATCTGGGAACCTCATCCTGCTGAGAGTCCTCAGAGA  550

seq1  TGCTGATGTGCCTTAGCTGGCTACTCAAGCCTCTAGCCTCTAATTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTGCCTTAGCTGGCTACTCAAGCCTCTAGCCTCTAATTTCAGA  600

seq1  ACTTGGAAGAATGAGGCAGGAAAATGTTATTCAAGAATGTTATTCAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGAATGAGGCAGGAAAATGTTATTCAAGAATGTTATTCAGCTT  650

seq1  GAGGTATATAGAAAGTTCCAGGCTACTTGGGGTTACCTATTGAGTCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATAGAAAGTTCCAGGCTACTTGGGGTTACCTATTGAGTCCTGC  700

seq1  TTCAAATATCAAAACACACACACACACACACACACACACACACACACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATCAAAACACACACACACACACACACACACACACACACACACG  750

seq1  AAAGAATGCAAAACCAAATATAGTCATGATTTGCAATGAGGGCTCCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGCAAAACCAAATATAGTCATGATTTGCAATGAGGGCTCCAATG  800

seq1  GGTATGTCTATATTTGATCAGTTTACAAAGTAAACAGCATTTAGTAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTATGTCTATATTTGATCAGTTTACAAAGTAAACAGCATTTAGTAGAGT  850

seq1  TTTTCTCTGGGCTTCTTCAAATAACTCTAGGGATACAGTAACCCCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGGGCTTCTTCAAATAACTCTAGGGATACAGTAACCCCCCTCT  900

seq1  GGTCTGACACTGTGTGGAGACCCCACTGACCATAGTCTTGGAGGAGTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACACTGTGTGGAGACCCCACTGACCATAGTCTTGGAGGAGTAGA  950

seq1  TTTTCCTGACTAAATTTCC-TGATACAACAAGGGCTTTCTGTA-TTATCT  998
      ||||||||||||||||||| |||||||||| |||||||| ||| ||||||
seq2  TTTTCCTGACTAAATTTCCTTGATACAACAGGGGCTTTCCGTATTTATCT  1000

seq1  TCACCTTGGTGTTCTTTGAAGGGGAATTATTGCTGTGATTGGGAAATA  1046
      ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGGTG-TCTTTGAAGGGGAATTATTGCTGTGATTGGGAAATA  1047

seq1: chr16_36421591_36421944
seq2: B6Ng01-018O12.g_79_432 (reverse)

seq1  AACCAAACAACGCCCCCCCCCAAACACACAGTCCCTGTCTACAGTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAACGCCCCCCCCCAAACACACAGTCCCTGTCTACAGTGGGTT  50

seq1  TTTACTGGCAGTTTCAATGCTTATGTTCACTCATGAAGAGTCACATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGCAGTTTCAATGCTTATGTTCACTCATGAAGAGTCACATGGCA  100

seq1  AACACATCTATTTCTTCTGCTGCTGTTGATTTTCTTGGATTTTTATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTATTTCTTCTGCTGCTGTTGATTTTCTTGGATTTTTATTGAT  150

seq1  GTTGTTCTTGTTCTTATTTTGTTTTGTTTTGTGAGTCTAGGTTTTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTGTTCTTATTTTGTTTTGTTTTGTGAGTCTAGGTTTTTCTGG  200

seq1  CTGTGCTGGAACAAACTCTGTAGATCAGGCTGGTCTCGCACTCCAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGAACAAACTCTGTAGATCAGGCTGGTCTCGCACTCCAAGGAT  250

seq1  CTCCCTTCCTCTGAGTTCCAAGTGCTGGGATTAAAGACATGAGCCAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCCTCTGAGTTCCAAGTGCTGGGATTAAAGACATGAGCCAACAT  300

seq1  GTCGGGTGATTAAATATTTTTTAGAAGCGCATGCTTGTACCCCAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGTGATTAAATATTTTTTAGAAGCGCATGCTTGTACCCCAGGCTGT  350

seq1  CCTA  354
      ||||
seq2  CCTA  354