BAC Information

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BAC

Clone NameB6Ng01-019F11
Chromosome16 (Build37)
Map Location 82,727,441 - 82,847,358
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621470, LOC435484, Pgk1-ps1, EG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F11.bB6Ng01-019F11.g
ACCDH852460DH852461
length1,1421,059
definitionDH852460|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F11, 5' end.DH852461|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,727,441 - 82,728,515)(82,846,298 - 82,847,358)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacctgcagttctggttccggaatgagggatcttccttgcg
ccggtgatggtaaccttcccgggttttctcatcccaggatttctcgtccc
gggttttctcgtctcgggtttcagcaccaactcttacacgcgttcacgcg
accggccaggaagaacgcaacaaaccggaatcttctgcggcaaaacttta
ttgcttacatcttcaggagcaagagtgcaagagtgcaagagctctattgc
ttacatctttaggagcaagaagcaagagccagagcaagagagcaaaagga
gagaatggcgaaaccctgtccctttttaaggagaattattctccgcctag
gacgtattactccctgattggctgcagcccatcggccgagttgtcgtcac
ggggaaggcagagcacatggggtggaaaactacccttggcacatgcgcag
attatttgtttaccacttagaacacaggatgtcagcgccatcttgtaatg
gcgaatgtgagggcggctccccacaagatgagagggtttgggagaagaaa
ataaaaagggaacaaagagtagaaataaattataatctcaaaaaactgct
ttcgaatgtgaaatagccataaaattatgctttattttaagtaatagtat
tttacatgtctgaactttctcttaatgactcagaataagtattaaatatg
tgtgtttttaatagagccattatatttttgaaaatatttattcatgtata
tttatatacttaattaatagaaaccatatgcgtgcaaaaagtttgacact
atagaaaaacaaccaaaaagtaaatatagccttttaattttcaataactt
gttaaaatcaatgtctaccccaaccacaccaaatcttgctgggatgtttt
ggaaactgactccactttaaccttcattagcattgaacaggacaatatag
ataaattagttcctgtcagataacatgaaaattatgaacaaaatagtggg
cagatagagaaggcatagatatgaatatgtaaaaattaagtattagcgtt
agaactttgccattctgggcattgattgggaaattttcattc
gaattcctatcctcattcccaaattattgaatacaacctgagctctaagc
tgaatctaaaccctttcctcccaggttgcatttgatcatggtctttatta
cagcaaaaaaagagaaaacctttttttttccactaggaaaatgcttttac
taaatttaaagtcattttaatatttaaggctcacagtatttgaaactagg
cacataaactatgctattcatttccttcccattttatattccttatatgt
gaaatcttcagtgatagccatgcaattatagcttgttacctactacaaaa
tgtttactttctgaataaaattacagatctttataagagatggagagatg
gaaaccactataaatgactgtttttaatagccagaagggacagaactgta
tgggcaaaataaataaacaggaaatgaatatataaacatatatctaaata
gggtgtatatggaaacgtatttaaatttgttcataaatagactgagatcc
tgaattttaattcacacaataaggtataataatccatttgaagaaacaga
tttgactatatatcaaataaatggcttgcccaaggaaataggaaatggta
atcctaaatgggtgatttaatgtcttttacatcacccatctgaattctcc
agcgtgtctactctctccgtcttacccataagcttaactaccagtgattg
cttgtttcaatggtctgccatttttcacacatttttcaatggaatacatt
taaatacaaacaatctcatgctgatatgtgctataaattcattgagatag
aaatcattattagagagagaacacttctctttttcaaatgatattttgag
gtttccgtgttcagaaaatcatttttcccaaatcatgaatgagatcaact
cctctgaactacttcagtgactaaagaggtgcattttcagtgatacacac
ttaaatctagtcttccatatattctatatataaaggatgtccagctataa
ccacaaaatttaatcagatataattaatattttattcttgccaatttctt
ttatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82727441_82728515
seq2: B6Ng01-019F11.b_121_1187

seq1  TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCTTCCCGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCTTCCCGGGTT  50

seq1  TTCTCATCCCAGGATTTCTCGTCCCGGGTTTTCTCGTCTCGGGTTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCCCAGGATTTCTCGTCCCGGGTTTTCTCGTCTCGGGTTTCAGC  100

seq1  ACCAACTCTTACACGCGTTCACGCGACCGGCCAGGAAGAACGCAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTCTTACACGCGTTCACGCGACCGGCCAGGAAGAACGCAACAAAC  150

seq1  CGGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAG  200

seq1  TGCAAGAGTGCAAGAGCTCTATTGCTTACATCTTTAGGAGCAAGAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGTGCAAGAGCTCTATTGCTTACATCTTTAGGAGCAAGAAGCAA  250

seq1  GAGCCAGAGCAAGAGAGCAAAAGGAGAGAATGGCGAAACCCTGTCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGCAAGAGAGCAAAAGGAGAGAATGGCGAAACCCTGTCCCTTT  300

seq1  TTAAGGAGAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGC  350

seq1  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400

seq1  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450

seq1  AGGATGTCAGCGCCATCTTGTAATGGCGAATGTGAGGGCGGCTCCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCAGCGCCATCTTGTAATGGCGAATGTGAGGGCGGCTCCCCACA  500

seq1  AGATGAGAGGGTTTGGGAGAAGAAAATAAAAAGGGAACAAAGAGTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGAGGGTTTGGGAGAAGAAAATAAAAAGGGAACAAAGAGTAGAAA  550

seq1  TAAATTATAATCTCAAAAAACTGCTTTCGAATGTGAAATAGCCATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATAATCTCAAAAAACTGCTTTCGAATGTGAAATAGCCATAAAAT  600

seq1  TATGCTTTATTTTAAGTAATAGTATTTTACATGTCTGAACTTTCTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTATTTTAAGTAATAGTATTTTACATGTCTGAACTTTCTCTTAA  650

seq1  TGACTCAGAATAAGTATTAAATATGTGTGTTTTTAATAGAGCCATTATA-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGACTCAGAATAAGTATTAAATATGTGTGTTTTTAATAGAGCCATTATAT  700

seq1  TTTTGAAAATATTTATTCATGTATATTTATATACTTAATTAATAGAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATATTTATTCATGTATATTTATATACTTAATTAATAGAAACC  750

seq1  ATATGCGTGCAAAAAG-TTGACACTATAGAAAAACAACCAAAAAGTAAAT  798
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATGCGTGCAAAAAGTTTGACACTATAGAAAAACAACCAAAAAGTAAAT  800

seq1  ATAGCCTTTTAATTTTCAATAACTTGTTAAAATCAATGTCTACCCCAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTTTAATTTTCAATAACTTGTTAAAATCAATGTCTACCCCAACC  850

seq1  ACACCAAAAATCTTGCTGGGATGTTTTGGAAACTGACTCCAACTTTAACC  898
      |||||  ||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACC--AAATCTTGCTGGGATGTTTTGGAAACTGACTCC-ACTTTAACC  897

seq1  TTCATAGCCATTGAACAAGGACAATATAAGATAAATTAGTTCCTGTCAGA  948
      |||||   |||||||| |||||||||| ||||||||||||||||||||||
seq2  TTCATTAGCATTGAAC-AGGACAATAT-AGATAAATTAGTTCCTGTCAGA  945

seq1  ATAAACATGAAAAATTATGAAC-AAATAGT-GGCAGAAAAAGAGAAGGCA  996
         |||||| |||||||||||| ||||||| |||||  | ||||||||||
seq2  --TAACATG-AAAATTATGAACAAAATAGTGGGCAG--ATAGAGAAGGCA  990

seq1  TAGATCATGATAATGTAAAAATTAAGGTAATTAGCG-TAGACTATTGCCA  1045
      ||||| ||||  ||||||||||||||   ||||||| ||||   ||||||
seq2  TAGAT-ATGAATATGTAAAAATTAAG--TATTAGCGTTAGAACTTTGCCA  1037

seq1  TTCTGGGCAATGATTGGAAATTTTTCATTC  1075
      ||||||||| ||||||| || |||||||||
seq2  TTCTGGGCATTGATTGGGAAATTTTCATTC  1067

seq1: chr16_82846298_82847358
seq2: B6Ng01-019F11.g_68_1119 (reverse)

seq1  AAAAGAAATGTGCAAGAAATAAAATATTTAATTTATATCTGATTAAATTT  50
      |||||||||  ||||| |||||||||||  | ||||||||||||||||||
seq2  AAAAGAAATTGGCAAG-AATAAAATATT--AATTATATCTGATTAAATTT  47

seq1  TGTGTTATTAGCTGGACATTCTTTATAATATAGAATATATGGAAGACTAG  100
      |||| |  ||||||||||| |||||| |||||||||||||||||||||||
seq2  TGTGGTTATAGCTGGACATCCTTTAT-ATATAGAATATATGGAAGACTAG  96

seq1  ATTTTAAGTGTGTATCACTGAAAATGCACCTCTTTAGTCACTTGAAGTAG  150
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-TTTAAGTGTGTATCACTGAAAATGCACCTCTTTAGTCAC-TGAAGTAG  144

seq1  TTCAGAAGGAGTTGATCTCATTCATGATTTTGGAAAAATGATTTTTCTGA  200
      ||||| |||||||||||||||||||||||| |||||||||| ||||||||
seq2  TTCAG-AGGAGTTGATCTCATTCATGATTTGGGAAAAATGA-TTTTCTGA  192

seq1  ACACGGAAACCTCAAAATATCATTTGAAAAAAGAGAAGTGTTCTCTCTCT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACGGAAACCTCAAAATATCATTTG-AAAAAGAGAAGTGTTCTCTCTCT  241

seq1  AATAATGATTTCTATCTCAATGAATTTATAGCACATATCAGCATGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATTTCTATCTCAATGAATTTATAGCACATATCAGCATGAGATT  291

seq1  GTTTGTATTTAAATGTATTCCATTGAAAAATGTGTGAAAAATGGCAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTTAAATGTATTCCATTGAAAAATGTGTGAAAAATGGCAGACC  341

seq1  ATTGAAACAAGCAATCACTGGTAGTTAAGCTTATGGGTAAGACGGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACAAGCAATCACTGGTAGTTAAGCTTATGGGTAAGACGGAGAGA  391

seq1  GTAGACACGCTGGAGAATTCAGATGGGTGATGTAAAAGACATTAAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACGCTGGAGAATTCAGATGGGTGATGTAAAAGACATTAAATCAC  441

seq1  CCATTTAGGATTACCATTTCCTATTTCCTTGGGCAAGCCATTTATTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGGATTACCATTTCCTATTTCCTTGGGCAAGCCATTTATTTGAT  491

seq1  ATATAGTCAAATCTGTTTCTTCAAATGGATTATTATACCTTATTGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCAAATCTGTTTCTTCAAATGGATTATTATACCTTATTGTGTGA  541

seq1  ATTAAAATTCAGGATCTCAGTCTATTTATGAACAAATTTAAATACGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTCAGGATCTCAGTCTATTTATGAACAAATTTAAATACGTTTC  591

seq1  CATATACACCCTATTTAGATATATGTTTATATATTCATTTCCTGTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACACCCTATTTAGATATATGTTTATATATTCATTTCCTGTTTATT  641

seq1  TATTTTGCCCATACAGTTCTGTCCCTTCTGGCTATTAAAAACAGTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCCCATACAGTTCTGTCCCTTCTGGCTATTAAAAACAGTCATTT  691

seq1  ATAGTGGTTTCCATCTCTCCATCTCTTATAAAGATCTGTAATTTTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTTTCCATCTCTCCATCTCTTATAAAGATCTGTAATTTTATTCA  741

seq1  GAAAGTAAACATTTTGTAGTAGGTAACAAGCTATAATTGCATGGCTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAACATTTTGTAGTAGGTAACAAGCTATAATTGCATGGCTATCA  791

seq1  CTGAAGATTTCACATATAAGGAATATAAAATGGGAAGGAAATGAATAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATTTCACATATAAGGAATATAAAATGGGAAGGAAATGAATAGCA  841

seq1  TAGTTTATGTGCCTAGTTTCAAATACTGTGAGCCTTAAATATTAAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATGTGCCTAGTTTCAAATACTGTGAGCCTTAAATATTAAAATGA  891

seq1  CTTTAAATTTAGTAAAAGCATTTTCCTAGTGGAAAAAAAAAGGTTTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTTAGTAAAAGCATTTTCCTAGTGGAAAAAAAAAGGTTTTCTC  941

seq1  TTTTTTTGCTGTAATAAAGACCATGATCAAATGCAACCTGGGAGGAAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTGTAATAAAGACCATGATCAAATGCAACCTGGGAGGAAAGG  991

seq1  GTTTAGATTCAGCTTAGAGCTCAGGTTGTATTCAATAATTTGGGAATGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATTCAGCTTAGAGCTCAGGTTGTATTCAATAATTTGGGAATGAG  1041

seq1  GATAGGAATTC  1061
      |||||||||||
seq2  GATAGGAATTC  1052