BAC Information

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BAC

Clone NameB6Ng01-019H18
Chromosome16 (Build37)
Map Location 41,045,061 - 41,210,052
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H18.bB6Ng01-019H18.g
ACCDH852556DH852557
length1,114597
definitionDH852556|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H18, 5' end.DH852557|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,045,061 - 41,046,187)(41,209,456 - 41,210,052)
sequence
gaattcatttttacagctccgatattccctatgttggcatacaatgcatg
tttgcatgtgcatatgtatgtacatacatggtgtcagaatcatggcagtt
gtggatctagatgtcacatgaaatgcacatattgttgatgatgacattct
gtgtcccagtacatctttctaacaatggagcagcatttagatttaggtaa
tagattggaagttttgtacaggggactccatgattcttttattatatcct
ttccctctgtaataatcccagtaaagaaacagtcttggattgctttatta
gataaattatggctaaaattttgattttcttttctgaagcagcaaaggat
ttccagggttcatgtgtacatggtttggtttctacagagctgcttcagga
tttctcataaacctacatagaccttgacacaagggactccattagaagtt
ctttccaagtctagttgctaagcttttccaatttattttacagtataagt
tttttgttgctttttactgtttcagaattcagcattgcaatgaggattgt
tttctttttaacacttactttgttcagaaatgtctcctagaggctagaag
gatttaaaggtttagttatgaaagcctgggttcaaatgtcagttctccca
agttcattcatagaacttgggatgtaggtatatgggttaggtctatcttt
ccttgtctgtaaaataggagtaatagcatgtaatttttgcaagagaattc
tatatatatatatataatgtataatgtaattataatatacaattatatta
tataacatatgacatataatttataataaatggatatatttatatagttt
aagcctcttctttccctgtctgtaatggcaataatagcatgtaatttttg
taaaagatgtctaatatatattatataatataaaagtgtatcaatgctga
tagaaagaccatcctaattatgtaatatattttataccattgtgcaagta
ttcagaatcattatatactcaacaagggagtcaatcctataagacctcct
caatagatagcttagcccatgtgaatggggtctaccattcttctcaaagg
ttaacccaattgtt
gaattccatatcaaacacaaaatgcctaagtaaacaaccaactgaggtac
attgttctcataacgagttctttaaccttaaacccacacatgtctgtcta
cagtttctttagagactcaataatttatatttctgtggggttttttgttt
gtttgtttgtttttggtacaccattttgaaatctaacatgcatatgtata
gtaatagacacaaaaataaaatataatctgatattttttaatatatgtct
taagatcttgagaaatctaccacatgctattttttcctagtgtaacagca
catcattcataagtatttaacaatgagtttcctacacataaacaagaagc
tatttcaatggataccttctgggaaagagaaaatcatattttttttccaa
gggagtgccactaggcataactacagcattccagagaaagtttcattccc
aggactagttgatcagcacaaatcagactctattttaaatgttgagaggg
gtcacttttgtttagctttgttgtggtatttaatttttttttttgagtaa
aggacatgaaatgggtggataagagttgggaaggattgggaaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41045061_41046187
seq2: B6Ng01-019H18.b_42_1155

seq1  GAATTCATTTTTACAGCTCCGATATTCCCTATGTTGGCATACAATGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTACAGCTCCGATATTCCCTATGTTGGCATACAATGCATG  50

seq1  TTTGCATGTGCATATGTATGTACATACATGGTGTCAGAATCATGGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTGCATATGTATGTACATACATGGTGTCAGAATCATGGCAGTT  100

seq1  GTGGATCTAGATGTCACATGAAATGCACATATTGTTGATGATGACATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTAGATGTCACATGAAATGCACATATTGTTGATGATGACATTCT  150

seq1  GTGTCCCAGTACATCTTTCTAACAATGGAGCAGCATTTAGATTTAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAGTACATCTTTCTAACAATGGAGCAGCATTTAGATTTAGGTAA  200

seq1  TAGATTGGAAGTTTTGTACAGGGGACTCCATGATTCTTTTATTATATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGAAGTTTTGTACAGGGGACTCCATGATTCTTTTATTATATCCT  250

seq1  TTCCCTCTGTAATAATCCCAGTAAAGAAACAGTCTTGGATTGCTTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGTAATAATCCCAGTAAAGAAACAGTCTTGGATTGCTTTATTA  300

seq1  GATAAATTATGGCTAAAATTTTGATTTTCTTTTCTGAAGCAGCAAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTATGGCTAAAATTTTGATTTTCTTTTCTGAAGCAGCAAAGGAT  350

seq1  TTCCAGGGTTCATGTGTACATGGTTTGGTTTCTACAGAGCTGCTTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGTTCATGTGTACATGGTTTGGTTTCTACAGAGCTGCTTCAGGA  400

seq1  TTTCTCATAAACCTACATAGACCTTGACACAAGGGACTCCATTAGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATAAACCTACATAGACCTTGACACAAGGGACTCCATTAGAAGTT  450

seq1  CTTTCCAAGTCTAGTTGCTAAGCTTTTCCAATTTATTTTACAGTATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGTCTAGTTGCTAAGCTTTTCCAATTTATTTTACAGTATAAGT  500

seq1  TTTTTGTTGCTTTTTACTGTTTCAGAATTCAGCATTGCAATGAGGATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGCTTTTTACTGTTTCAGAATTCAGCATTGCAATGAGGATTGT  550

seq1  TTTCTTTTTAACACTTACTTTGTTCAGAAATGTCTCCTAGAGGCTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAACACTTACTTTGTTCAGAAATGTCTCCTAGAGGCTAGAAG  600

seq1  GATTTAAAGGTTTAGTTATGAAAGCCTGGGTTCAAATGTCAGTTCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGGTTTAGTTATGAAAGCCTGGGTTCAAATGTCAGTTCTCCCA  650

seq1  AGTTCATTCATAGAACTTGGGATGTAGGTATATGGGTTAGGTCTATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCATAGAACTTGGGATGTAGGTATATGGGTTAGGTCTATCTTT  700

seq1  CCTTGTCTGTAAAATAGGAGTAATAGCATGTAA-TTTTGCAAGAGAATTC  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTGTCTGTAAAATAGGAGTAATAGCATGTAATTTTTGCAAGAGAATTC  750

seq1  TATATATATATATATAATGTATAATGTAATTATAATATACAATTATATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATAATGTATAATGTAATTATAATATACAATTATATTA  800

seq1  TATAACATATGACATATAATTTATAATAAATGGATATATTTATATAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATATGACATATAATTTATAATAAATGGATATATTTATATAGTTT  850

seq1  AAGCCTC-TCTTTCCTTGTCTGTAATGGCAATAATAGCATGTAATTTTTG  898
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTTCTTTCCCTGTCTGTAATGGCAATAATAGCATGTAATTTTTG  900

seq1  TAAAAGATGTCTAATATATATTATATAATATAAAAGTGTATCAATGCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAAGATGTCTAATATATATTATATAATATAAAAGTGTATCAATGCTG-  949

seq1  ATAGAAAGAACATCCTAAATTATGTAAATATTATTTTATACCATTGTGCA  998
      ||||||||| |||||| |||||||| |||| |||||||||||||||||||
seq2  ATAGAAAGACCATCCT-AATTATGT-AATA-TATTTTATACCATTGTGCA  996

seq1  AGTATTCAGAATCATTATATACTCAACAAAGGGGAGACAAAACCTATAGA  1048
      |||||||||||||||||||||||||||||  ||||| | || |||||| |
seq2  AGTATTCAGAATCATTATATACTCAACAA--GGGAGTC-AATCCTATA-A  1042

seq1  GACCTCCTCAAATAGATAGGCATAGCCCCAGTGGAATGGGGCCAACCATT  1098
      ||||||||| |||||||| || ||||||  || |||||||| | ||||||
seq2  GACCTCCTC-AATAGATA-GCTTAGCCCATGT-GAATGGGGTCTACCATT  1089

seq1  CATCTCAAAAATGTTAACCCAAAATTGTT  1127
      | ||||  ||| ||||||||  |||||||
seq2  CTTCTC--AAAGGTTAACCC--AATTGTT  1114

seq1: chr16_41209456_41210052
seq2: B6Ng01-019H18.g_69_665 (reverse)

seq1  ACTCCTTCCCAATCCTTCCCAACTCTTATCCACCCATTTCATGTCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCCAATCCTTCCCAACTCTTATCCACCCATTTCATGTCCTTTA  50

seq1  CTCAAAAAAAAAAATTAAATACCACAACAAAGCTAAACAAAAGTGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAAAAAAATTAAATACCACAACAAAGCTAAACAAAAGTGACCCC  100

seq1  TCTCAACATTTAAAATAGAGTCTGATTTGTGCTGATCAACTAGTCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACATTTAAAATAGAGTCTGATTTGTGCTGATCAACTAGTCCTGGG  150

seq1  AATGAAACTTTCTCTGGAATGCTGTAGTTATGCCTAGTGGCACTCCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTTTCTCTGGAATGCTGTAGTTATGCCTAGTGGCACTCCCTTG  200

seq1  GAAAAAAAATATGATTTTCTCTTTCCCAGAAGGTATCCATTGAAATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATATGATTTTCTCTTTCCCAGAAGGTATCCATTGAAATAGCT  250

seq1  TCTTGTTTATGTGTAGGAAACTCATTGTTAAATACTTATGAATGATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTATGTGTAGGAAACTCATTGTTAAATACTTATGAATGATGTGC  300

seq1  TGTTACACTAGGAAAAAATAGCATGTGGTAGATTTCTCAAGATCTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACTAGGAAAAAATAGCATGTGGTAGATTTCTCAAGATCTTAAGA  350

seq1  CATATATTAAAAAATATCAGATTATATTTTATTTTTGTGTCTATTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTAAAAAATATCAGATTATATTTTATTTTTGTGTCTATTACTAT  400

seq1  ACATATGCATGTTAGATTTCAAAATGGTGTACCAAAAACAAACAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCATGTTAGATTTCAAAATGGTGTACCAAAAACAAACAAACAAA  450

seq1  CAAAAAACCCCACAGAAATATAAATTATTGAGTCTCTAAAGAAACTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCCCACAGAAATATAAATTATTGAGTCTCTAAAGAAACTGTAG  500

seq1  ACAGACATGTGTGGGTTTAAGGTTAAAGAACTCGTTATGAGAACAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGTGTGGGTTTAAGGTTAAAGAACTCGTTATGAGAACAATGTA  550

seq1  CCTCAGTTGGTTGTTTACTTAGGCATTTTGTGTTTGATATGGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTGGTTGTTTACTTAGGCATTTTGTGTTTGATATGGAATTC  597