BAC Information

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BAC

Clone NameB6Ng01-019I19
Chromosome16 (Build37)X (Build37)
Map Location 21,169,827 - 21,170,861109,062,788 - 109,063,016
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneYeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik
Downstream geneEphb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I19.bB6Ng01-019I19.g
ACCDH852604DH852605
length1,036913
definitionDH852604|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I19, 5' end.DH852605|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,169,827 - 21,170,861)(109,062,788 - 109,063,016)
sequence
gaattccagaggttcttcatgtctcatgacagtgtgcacttggcttttat
tattaaataaaaatttaattttatttagttgctttgatatgttggtgggt
atgtgtgtttgtagattacaaaatacataaatgctttatccatatgatgc
tacgtatatgcatatgatctcaggactgaacattatcaacatggctgcct
aaagaagacctgaagaacaccaatggacatattaacagggaactgggaaa
gctccttgggcctcaaccctagacaaagagctataggtagctggggtatg
ctgacactggaagaaatggtcttcccacaggaagagccccacagttgttt
atccaataccaaggaggcagcattgtctttatggctccatagagtttcag
acaacatgccattcactattttatttctcagtttgggaggatgtccctgg
aggatctatctggtaattcttcagtgtcttgaaccctaccacctgtttgg
tatggccctttagttcctccccttgacatcttcctctacagggacaccat
gcacttcccaatgtacttcctgatgcacttcccagtgtatttcttgatgc
acttcctaatgcactttccatgcacttcctgatttcacttcccaatatac
ttcccaatgcactactagatgcactacccgatatattttctattgcactt
cctaatgcacttcccagtactgcaatagggcacttttctttcctggcggt
gcccctgccttggcggggctcctcttaccttggttcaaccctcactcaag
tctgcagcatcctgctcctcctcattccctccactcccacagcctggttc
tggtgaacattgccatgcatcccccttccctcagcctctgcatcctccag
ggcctacattctctctttcttctcattcaccttcttcccaggcccacctc
ccaccccctctccccctcccttttttaattcttcaattcaactgcccccc
aattacagcctctctgtgggaaaggatggtatgggt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatggctaagattaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagtaacactcctccattgttggtg
ggattgcgaacttatacaaccattctggaaatcagtctggcggtttctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccataat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttaagcaatg
gattactactcagctattaaaaagagtgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagacgaaaggatggaccatcta
gggactgccatatccagggattcatcccataatcagcttccaaacgctga
caccattgcatatactagcaagattttgctgaaaggacccagatatagct
gtctctttgtgagactatgccggggcctagcaaacagaagtggatgctca
cagtcagctatttggatggatcacagggcccccaatggaggagctagaga
aagtacccaaggagctaaatggatctgcaatcctataggtggaacaacat
atgaactaaccagtaccctcggagcttgtgtctctagctgcatatgaatc
agaagatggcctagtcggcatcagtggaaagagaggcccatggtcatgca
actttatatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_21169827_21170861
seq2: B6Ng01-019I19.b_45_1080 (reverse)

seq1  ACCCATAGCATCCTTTCCCACAGAAAGACTGTAATTTGGGGGGCAAGTGT  50
      ||||||| |||||||||||||||| || |||||| ||||||||| ||| |
seq2  ACCCATACCATCCTTTCCCACAGAGAGGCTGTAA-TTGGGGGGC-AGT-T  47

seq1  GAATTGAGGAAGTTGAAAAGGGAGGGGGAGAGGGGGTGGGAGGTGGGCCT  100
      ||||||| ||| |  |||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGAATTAAAAAAGGGAGGGGGAGAGGGGGTGGGAGGTGGGCCT  97

seq1  GGGAGGGAGGTGGATGAGAAGAGAGAGAGAATGTAGG-CCTGGAGGATGC  149
      |||| | ||||| ||||||||| |||||||||||||| ||||||||||||
seq2  GGGAAGAAGGTGAATGAGAAGAAAGAGAGAATGTAGGCCCTGGAGGATGC  147

seq1  AGAGGCTGAGGGAAGGGGGATGCATGGCAATGTTCACCAGAACCAGGCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAGGGAAGGGGGATGCATGGCAATGTTCACCAGAACCAGGCTG  197

seq1  TGGGAGTGGAGGGATTGAGGAGGAGCAGGATGCTGCAGACTTGAGTGAGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGGAGGGAATGAGGAGGAGCAGGATGCTGCAGACTTGAGTGAGG  247

seq1  GTTGAACCAAGGTAAGAGGAGCCCCGCCAAGGCAGGGGCACCGCCAGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACCAAGGTAAGAGGAGCCCCGCCAAGGCAGGGGCACCGCCAGGAA  297

seq1  --GAAAGTGCCCTATTGCAGTACTGGGAAGTGCATTAGGAAGTGCAATAG  347
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGCCCTATTGCAGTACTGGGAAGTGCATTAGGAAGTGCAATAG  347

seq1  AAAATATATCGGGTAGTGCATCTAGTAGTGCATTGGGAAGTATATTGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCGGGTAGTGCATCTAGTAGTGCATTGGGAAGTATATTGGGA  397

seq1  AGTG-AATCAGGAAGTGCATGGAAAGTGCATTAGGAAGTGCATCAAGAAA  446
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCAGGAAGTGCATGGAAAGTGCATTAGGAAGTGCATCAAGAAA  447

seq1  TACACTGGGAAGTGCATCAGGAAGTACATTGGGAAGTGCATGGTGTCCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGAAGTGCATCAGGAAGTACATTGGGAAGTGCATGGTGTCCCT  497

seq1  GTAGAGGAAGATGTCAAGGGGAGGAACTAAAGGGCCATACCAAACAGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAAGATGTCAAGGGGAGGAACTAAAGGGCCATACCAAACAGGTG  547

seq1  GTAGGGTTCAAGACACTGAAGAATTACCAGATAGATCCTCCAGGGACATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTCAAGACACTGAAGAATTACCAGATAGATCCTCCAGGGACATC  597

seq1  CTCCCAAACTGAGAAATAAAATAGTGAATGGCATGTTGTCTGAAACTCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAACTGAGAAATAAAATAGTGAATGGCATGTTGTCTGAAACTCTA  647

seq1  TGGAGCCATAAAGACAATGCTGCCTCCTTGGTATTGGATAAACAACTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCATAAAGACAATGCTGCCTCCTTGGTATTGGATAAACAACTGTG  697

seq1  GGGCTCTTCCTGTGGGAAGACCATTTCTTCCAGTGTCAGCATACCCCAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTCCTGTGGGAAGACCATTTCTTCCAGTGTCAGCATACCCCAGC  747

seq1  TACCTATAGCTCTTTGTCTAGGGTTGAGGCCCAAGGAGCTTTCCCAGTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAGCTCTTTGTCTAGGGTTGAGGCCCAAGGAGCTTTCCCAGTTC  797

seq1  CCTGTTAATATGTCCATTGGTGTTCTTCAGGTCTTCTTTAGGCAGCCATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAATATGTCCATTGGTGTTCTTCAGGTCTTCTTTAGGCAGCCATG  847

seq1  TTGATAATGTTCAGTCCTGAGATCATATGCATATACGTAGCATCATATGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATGTTCAGTCCTGAGATCATATGCATATACGTAGCATCATATGG  897

seq1  ATAAAGCATTTATGTATTTTGTAATCTACAAACACACATACCCACCAACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATTTATGTATTTTGTAATCTACAAACACACATACCCACCAACA  947

seq1  TATCAAAGCAACTAAATAAAATTAAATTTTTATTTAATAATAAAAGCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGCAACTAAATAAAATTAAATTTTTATTTAATAATAAAAGCCAA  997

seq1  GTGCACACTGTCATGAGACATGAAGAACCTCTGGAATTC  1035
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACTGTCATGAGACATGAAGAACCTCTGGAATTC  1036

seq1: chrX_109062788_109063016
seq2: B6Ng01-019I19.g_754_979 (reverse)

seq1  GGCATATAAAGTTTGTATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCG  50
      ||||||||||| ||| ||| || ||||||||||||||||| |||| ||||
seq2  GGCATATAAAG-TTGCATGACC-ATGGGCCTCTCTTTCCACTGAT-GCCG  47

seq1  ACTAGGCCATCTTTTGATACATATGCGGCTAGAGTCAAGAGCTCCG-GGG  99
      ||||||||||||| |||| ||||||| ||||||| ||  ||||||| |||
seq2  ACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACACAAGCTCCGAGGG  97

seq1  TACTGGTTAGTTCATAATGTTGTTCCCCCTATAGGGTTGCAGATCCCTTT  149
      ||||||||||||||| |||||||||| |||||||| |||||||||| |||
seq2  TACTGGTTAGTTCAT-ATGTTGTTCCACCTATAGGATTGCAGATCCATTT  146

seq1  AGCTCCTTGGGTACTTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGGGTAC-TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC  195

seq1  ATGC-AATAGTTGACTGTGAGCATCCACTTC  229
      || | ||||| ||||||||||||||||||||
seq2  ATCCAAATAGCTGACTGTGAGCATCCACTTC  226