BAC Information

Click to search

BAC

Clone NameB6Ng01-019M06
Chromosome16 (Build37)
Map Location 89,264,393 - 89,390,225
singlet/doubletdoublet
Overlap geneLOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M06.bB6Ng01-019M06.g
ACCDH852758DH852759
length1,1401,065
definitionDH852758|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M06, 5' end.DH852759|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,389,065 - 89,390,225)(89,264,393 - 89,265,472)
sequence
gaattctcattagacaattattgtaactaaagaaaaatgaggactctaaa
atagaaaagtgttcctttaatattaattttctagttttggaaaatgctga
ggaatgagaatataaaaataattcagaaattgcttgttgtgtgtggtctt
tttaaaggaagagaatcagcagcagcaactagaaagctaaatttactcta
cgattaagaagtatgaaattaggctgtgcttggtggcccacacctttaat
cccagcacatgggaggcagagttcagcagatttctgtgaatgtgaggcca
gcttggtctatatagagagttacatgtcagccaggtctacacagtaagac
cctgtatcaaacaaaaggaatgaaatgatatttaaaccaatgtaattaga
cattgattgacatataaataaatgttatgaaatccaccattgtggcatct
gttttgagatgaagaggcttctgctggggaaatgcaagggttctctcaga
tcagtaatgaatcatccacagaactcagactcccttgatcaaagtgaaaa
tcatctcatgagccctacccattctttggttgttggtgtgtcctgacctt
tctcaaatctcaatgattataactctcacagaaacttctgacactggctg
caactgaatttgttgaccaacagatttgatgatgtttaaaatcagtgtgc
taaaagaaaaccatttaaatgtagtaaaggaaaacgatgtaataaaggaa
tttaaatctatatcaaagcaaagcaccttaggcaaaaattaaaatatttt
cagttgaactacgaagcagttgggtcttaacaatttttttcatcaccata
aagcttatgcagagacgaaaataaagtaacattgtgtaacattgggaaga
acaagtgttttgaggatatattctgtgaagcaaactccagatgaaagtaa
acaggcacaaaaattagtatatgcatactagaaaatgacagaaacatttt
tctgccaatagaggttagatctaagacaataatttttattatggggatgt
atgtatttattaagtattgttgaagagtagtagaaagctaaaaaacatgt
caaagacagatcccttagaaaaaatctgaagactacttac
gaattccaattttattctgaagtagacagcacaatgctaatgatcacatg
aatgcagatggtgactctaagagcaaaaacaacactaagcagaaagggag
atactagatcggccacagaatctgatccctaaatataccacagaatcaaa
gtaataaaaactgaaaaataatagcaaacacaagcatacaaatgagaaat
tgaagaacatatcatgagatgaaaagatctatgatgctcagtaaaattaa
catgatatagtaaaatacatgacaaaatatgattatgtagaaattcagtc
atcaaattaccaatagcataaccaatgaccagatcatttttatcagaaat
acttaggaaatacatgcttattttacaataacaaatcagagcaaggaaaa
gataagtttttagtatggagcactacaaacatacagagataaagaggaga
gagggatttcaatgatttgtaatatagcacagtagaatttgtgagtatta
aataaactaaatatggaatgatccatagtcttgaaaatacatccaaattt
tcatattaagtcttatgatctgaccttgggatcctaacatatgtgcacaa
ttatctcagttatgcagtgttgattggctaggacactgtggcaccctgat
atttttgaagcatataagagactagtgtgatgtcattatgcctgtggttt
taccaccaatcattcaggtatataaaagacccatggcagatgttgaaaca
caaactccagaaacctactgcttaatcttcctctgaaaactccactcctg
acaacatgtgctactacggaggatattatggaggcctgggctatggctat
gggctgtggctatggctatggctgtggctatggtggctatggtatggctg
ctgccgcccactgtgctgtgacgatactggtctatggatctactgaggac
attatgcatacaccagctttttaccagaagagcttctagtgtttctacag
aaactcaaacatgtctttgaaaattttacttagagcaaatattttaaaat
taattgaatttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89389065_89390225
seq2: B6Ng01-019M06.b_43_1182 (reverse)

seq1  GTAAGTATGTCTATCCAGATTTTTTTCTTAAGGTGATCTGTCTTTTTGAC  50
      ||||||| |||  | ||||||||||   ||||| ||||||||  ||||||
seq2  GTAAGTA-GTC--TTCAGATTTTTT--CTAAGG-GATCTGTC--TTTGAC  42

seq1  TAGTCTTTTTAGCTTTCCTACTAACTCTTCAACAATACATAATAAAAATT  100
        || ||||||||||| ||||| ||||||||||||||| |||||||   |
seq2  ATGT-TTTTTAGCTTT-CTACT-ACTCTTCAACAATACTTAATAAA---T  86

seq1  ACATACAT-CACATAATAAAAATTATTGTCTTAGATCTAAACCTCTATTG  149
      |||||||| | ||||||||||||||||||||||||||| |||||||||||
seq2  ACATACATCCCCATAATAAAAATTATTGTCTTAGATCT-AACCTCTATTG  135

seq1  GCAGAAAAATGTTTCTGTCATTTTTCTAGTATGCATATACCTTATTTTTT  199
      |||||||||||||||||||| |||||||||||||||||||  || |||||
seq2  GCAGAAAAATGTTTCTGTCA-TTTTCTAGTATGCATATAC--TAATTTTT  182

seq1  GTGCCTGTTTACTTTTCATCTGGAGTTTGCTTCACAAGAATATAATCCTC  249
      |||||||||||| |||||||||||||||||||||| ||||||| ||||||
seq2  GTGCCTGTTTAC-TTTCATCTGGAGTTTGCTTCAC-AGAATAT-ATCCTC  229

seq1  AAAACACTTGTTCTTCCCAATGTTACACAATGTTACTTTATTTTCGTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTTGTTCTTCCCAATGTTACACAATGTTACTTTATTTTCGTCTC  279

seq1  TGCATAAGCTTTATGGTGATGAAAAAAATTGTTAAGACCCAACTGCTTCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGCTTTATGGTGATGAAAAAAATTGTTAAGACCCAACTGCTTCG  329

seq1  TAGTTCAACTGAAAATATTTTAATTTTTTGCCTAAGGTGCTTTGCTTTGA  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGTTCAACTGAAAATATTTTAA-TTTTTGCCTAAGGTGCTTTGCTTTGA  378

seq1  TATAGATTTAAATTCCTTTATTACATCGTTTTCCTTTACTACATTTAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTAAATTCCTTTATTACATCGTTTTCCTTTACTACATTTAAAT  428

seq1  GGTTTTCTTTTAGCACACTGATTTTAAACATCATCAAATCTGTTGGTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTTAGCACACTGATTTTAAACATCATCAAATCTGTTGGTCAA  478

seq1  CAAATTCAGTTGCAGCCAGTGTCAGAAGTTTCTGTGAGAGTTATAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAGTTGCAGCCAGTGTCAGAAGTTTCTGTGAGAGTTATAATCAT  528

seq1  TGAGATTTGAGAAAGGTCAGGACACACCAACAACCAAAGAATGGGTAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGAAAGGTCAGGACACACCAACAACCAAAGAATGGGTAGGG  578

seq1  CTCATGAGATGATTTTCACTTTGATCAAGGGAGTCTGAGTTCTGTGGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGATGATTTTCACTTTGATCAAGGGAGTCTGAGTTCTGTGGATG  628

seq1  ATTCATTACTGATCTGAGAGAACCCTTGCATTTCCCCAGCAGAAGCCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTACTGATCTGAGAGAACCCTTGCATTTCCCCAGCAGAAGCCTCT  678

seq1  TCATCTCAAAACAGATGCCACAATGGTGGATTTCATAACATTTATTTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAAAACAGATGCCACAATGGTGGATTTCATAACATTTATTTATA  728

seq1  TGTCAATCAATGTCTAATTACATTGGTTTAAATATCATTTCATTCCTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAATGTCTAATTACATTGGTTTAAATATCATTTCATTCCTTTT  778

seq1  GTTTGATACAGGGTCTTACTGTGTAGACCTGGCTGACATGTAACTCTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATACAGGGTCTTACTGTGTAGACCTGGCTGACATGTAACTCTCTA  828

seq1  TATAGACCAAGCTGGCCTCACATTCACAGAAATCTGCTGAACTCTGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCAAGCTGGCCTCACATTCACAGAAATCTGCTGAACTCTGCCTC  878

seq1  CCATGTGCTGGGATTAAAGGTGTGGGCCACCAAGCACAGCCTAATTTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCTGGGATTAAAGGTGTGGGCCACCAAGCACAGCCTAATTTCAT  928

seq1  ACTTCTTAATCGTAGAGTAAATTTAGCTTTCTAGTTGCTGCTGCTGATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAATCGTAGAGTAAATTTAGCTTTCTAGTTGCTGCTGCTGATTC  978

seq1  TCTTCCTTTAAAAAGACCACACACAACAAGCAATTTCTGAATTATTTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTAAAAAGACCACACACAACAAGCAATTTCTGAATTATTTTTA  1028

seq1  TATTCTCATTCCTCAGCATTTTCCAAAACTAGAAAATTAATATTAAAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATTCCTCAGCATTTTCCAAAACTAGAAAATTAATATTAAAGGA  1078

seq1  ACACTTTTCTATTTTAGAGTCCTCATTTTTCTTTAGTTACAATAATTGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTCTATTTTAGAGTCCTCATTTTTCTTTAGTTACAATAATTGTC  1128

seq1  TAATGAGAATTC  1161
      ||||||||||||
seq2  TAATGAGAATTC  1140

seq1: chr16_89264393_89265472
seq2: B6Ng01-019M06.g_69_1133

seq1  GAATTCCAATTTTATTCTGAAGTAGACAGCACAATGCTAATGATCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTTATTCTGAAGTAGACAGCACAATGCTAATGATCACATG  50

seq1  AATGCAGATGGTGACTCTAAGAGCAAAAACAACACTAAGCAGAAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATGGTGACTCTAAGAGCAAAAACAACACTAAGCAGAAAGGGAG  100

seq1  ATACTAGATCGGCCACAGAATCTGATCCCTAAATATACCACAGAATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGATCGGCCACAGAATCTGATCCCTAAATATACCACAGAATCAAA  150

seq1  GTAATAAAAACTGAAAAATAATAGCAAACACAAGCATACAAATGAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAAACTGAAAAATAATAGCAAACACAAGCATACAAATGAGAAAT  200

seq1  TGAAGAACATATCATGAGATGAAAAGATCTATGATGCTCAGTAAAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACATATCATGAGATGAAAAGATCTATGATGCTCAGTAAAATTAA  250

seq1  CATGATATAGTAAAATACATGACAAAATATGATTATGTAGAAATTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATAGTAAAATACATGACAAAATATGATTATGTAGAAATTCAGTC  300

seq1  ATCAAATTACCAATAGCATAACCAATGACCAGATCATTTTTATCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTACCAATAGCATAACCAATGACCAGATCATTTTTATCAGAAAT  350

seq1  ACTTAGGAAATACATGCTTATTTTACAATAACAAATCAGAGCAAGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAAATACATGCTTATTTTACAATAACAAATCAGAGCAAGGAAAA  400

seq1  GATAAGTTTTTAGTATGGAGCACTACAAACATACAGAGATAAAGAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTTTAGTATGGAGCACTACAAACATACAGAGATAAAGAGGAGA  450

seq1  GAGGGATTTCAATGATTTGTAATATAGCACAGTAGAATTTGTGAGTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTTCAATGATTTGTAATATAGCACAGTAGAATTTGTGAGTATTA  500

seq1  AATAAACTAAATATGGAATGATCCATAGTCTTGAAAATACATCCAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTAAATATGGAATGATCCATAGTCTTGAAAATACATCCAAATTT  550

seq1  TCATATTAAGTCTTATGATCTGACCTTGGGATCCTAACATATGTGCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAAGTCTTATGATCTGACCTTGGGATCCTAACATATGTGCACAA  600

seq1  TTATCTCAGTTATGCAGTGTTGATTGGCTAGGACACTGTGGCACCCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGTTATGCAGTGTTGATTGGCTAGGACACTGTGGCACCCTGAT  650

seq1  ATTTTTGAAGCATATAAGAGACTAGTGTGATGTCATTATGCCTGTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAAGCATATAAGAGACTAGTGTGATGTCATTATGCCTGTGGTTT  700

seq1  TACCACCAATCATTCAGGTATATAAAAGACCCATGGCAGATGTTGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCAATCATTCAGGTATATAAAAGACCCATGGCAGATGTTGAAACA  750

seq1  CAAACTCCAGAAACCTACTGCTTAATCTTCCTCTGAAAACTCCACTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCAGAAACCTACTGCTTAATCTTCCTCTGAAAACTCCACTCCTG  800

seq1  ACAACATGTGCTACTACGGAGGATATTATGGAGGCCTGGGCTATGGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGTGCTACTACGGAGGATATTATGGAGGCCTGGGCTATGGCTAT  850

seq1  -GGCTGTGGCTATGGCTATGGCTGTGGCTATGGTGGCTATGGTTATGGCT  899
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGCTGTGGCTATGGCTATGGCTGTGGCTATGGTGGCTATGG-TATGGCT  899

seq1  GCTGCCGCCCACTGTGCTGTGGACGATACTGGTCTTATGGATTCTACTGA  949
      |||||||||||||||||||| ||||||||||||| |||||| ||||||||
seq2  GCTGCCGCCCACTGTGCTGT-GACGATACTGGTC-TATGGA-TCTACTGA  946

seq1  GGACATTATGCATACACCCAGCCTTTCTAACCAGAAGAGCTTCCAAGTGT  999
      |||||||||||||||| |||||  || | ||||||||||||| | |||||
seq2  GGACATTATGCATACA-CCAGC--TTTTTACCAGAAGAGCTT-CTAGTGT  992

seq1  TTTCATACCAGAAACTCAAACATGTCTTTGAAAATTTTTAACTTTAGAGC  1049
      ||  |   ||||||||||||||||||||||||||||||  || |||||||
seq2  TTCTA---CAGAAACTCAAACATGTCTTTGAAAATTTT--AC-TTAGAGC  1036

seq1  AAAATATTTAAAATATAATTGAAATTTAACA  1080
       |||||||| |||  |||||| |||||||||
seq2  -AAATATTTTAAAATTAATTG-AATTTAACA  1065