BAC Information

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BAC

Clone NameB6Ng01-019N13
Chromosome16 (Build37)
Map Location 24,444,963 - 24,594,471
singlet/doubletdoublet
Overlap geneLpp, A730098P11Rik
Upstream geneMasp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019N13.bB6Ng01-019N13.g
ACCDH852817DH852818
length4071,093
definitionDH852817|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N13, 5' end.DH852818|Mus musculus domesticus DNA, BAC clone: B6Ng01-019N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,594,059 - 24,594,471)(24,444,963 - 24,446,072)
sequence
cagggaactcagtccctcaccaacatcttaagtgaaggagggacacttgc
acaccctggatcctcttggggacagagaccagtggaaagcaggggaacag
gcgcttgaggcagtaacacgtagggctcaagagaaatcactaaatcactc
atgccccaaagaaaacggccagagactcagaacatagaaggagtttggga
aacaagatgaaaaatggcaagaagatccaggatgctggtggttgcatctg
ctccatcatccagcagtgaacaaggctctgctctcagccatcacaggctt
cagtgtcctctgctctaagtgaaaatattctgtacctggatcaaagtcaa
gtgaaataatgactgcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtg
gaattccaactcaatgtgataagcattgcttgacctgtggtcctaaggag
ccaaacggccaggaggttgaaggccggggagtcagaatttggttccatat
aaggaagaactgtcttgtgcaaagatagaattaacagctgtctgaaatat
gatctctgtctcatgggagaccgtggagatgctaaggggagtcatgaata
gtcaggcatagtgggtcagaggtgctctgtggccagaacacatacacaca
gggaatgagatgtccctttgctgataaagagatgaacttgtacatgtttg
cacagcagaggagaactgtgagtcttctcttctgattttcatatttatcc
tggtgcctcactgcttgcaccttggttttggaagttcctagctcttctct
gcatagtgttttcagggcaacatcttacttctcagctgaaatgctcctgt
ccacgcacaagcagaaactgctcccaacagagccgtttcctttcttctcc
accctcctgctagctcctgggagaactgcagtgtggaacctggtttctga
gctgggttctgctgggtggtggcaggggctttatctgggtgcctatgtgc
atcccttaattttgtgtttatatcttataaaaacataaaaaaatgcatca
aaataagctcacagggaccgtttggactgaagaactagaaactgcttttt
gggcacatagctggataatttagggctagctgtccggtttttggataagg
gaatgggagccagcagagcagaactgatttgcatagcattgtgccatcag
aagcgactgttctggcttggagcttgggaacctttactccttgcccagtg
ctgtttgtaactgacaactccttgatgtagaagcagcagcctcacaatgc
agtctgaagagcctgagaattggttaccatttggaaaaggactcactcat
cttagatagctttatagtgacaggatagtaagtcaacatgacatggggaa
ccagaaccaaggtacattggggcctccctctgagtgtccacctaaaacag
tctggcttcaatttctctcccttgattatctgggtcctttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24594059_24594471
seq2: B6Ng01-019N13.b_46_458 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACTCATGCAGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTCATGCAGTCATT  50

seq1  ATTTCACTTGACTTTGATCCAGGTACAGAATATTTTCACTTAGAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTTGACTTTGATCCAGGTACAGAATATTTTCACTTAGAGCAGAG  100

seq1  GACACTGAAGCCTGTGATGGCTGAGAGCAGAGCCTTGTTCACTGCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAAGCCTGTGATGGCTGAGAGCAGAGCCTTGTTCACTGCTGGAT  150

seq1  GATGGAGCAGATGCAACCACCAGCATCCTGGATCTTCTTGCCATTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCAGATGCAACCACCAGCATCCTGGATCTTCTTGCCATTTTTCA  200

seq1  TCTTGTTTCCCAAACTCCTTCTATGTTCTGAGTCTCTGGCCGTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCCCAAACTCCTTCTATGTTCTGAGTCTCTGGCCGTTTTCTTT  250

seq1  GGGGCATGAGTGATTTAGTGATTTCTCTTGAGCCCTACGTGTTACTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGAGTGATTTAGTGATTTCTCTTGAGCCCTACGTGTTACTGCCT  300

seq1  CAAGCGCCTGTTCCCCTGCTTTCCACTGGTCTCTGTCCCCAAGAGGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGCCTGTTCCCCTGCTTTCCACTGGTCTCTGTCCCCAAGAGGATCC  350

seq1  AGGGTGTGCAAGTGTCCCTCCTTCACTTAAGATGTTGGTGAGGGACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGCAAGTGTCCCTCCTTCACTTAAGATGTTGGTGAGGGACTGAG  400

seq1  TTCCCTGGAATTC  413
      |||||||||||||
seq2  TTCCCTGGAATTC  413

seq1: chr16_24444963_24446072
seq2: B6Ng01-019N13.g_68_1160

seq1  GAATTCCAACTCAATGTGATAAGCATTGCTTGACCTGTGGTCCTAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCAATGTGATAAGCATTGCTTGACCTGTGGTCCTAAGGAG  50

seq1  CCAAACGGCCAGGAGGTTGAAGGCCGGGGAGTCAGAATTTGGTTCCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGGCCAGGAGGTTGAAGGCCGGGGAGTCAGAATTTGGTTCCATAT  100

seq1  AAGGAAGAACTGTCTTGTGCAAAGATAGAATTAACAGCTGTCTGAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAACTGTCTTGTGCAAAGATAGAATTAACAGCTGTCTGAAATAT  150

seq1  GATCTCTGTCTCATGGGAGACCGTGGAGATGCTAAGGGGAGTCATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTCTCATGGGAGACCGTGGAGATGCTAAGGGGAGTCATGAATA  200

seq1  GTCAGGCATAGTGGGTCAGAGGTGCTCTGTGGCCAGAACACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCATAGTGGGTCAGAGGTGCTCTGTGGCCAGAACACATACACACA  250

seq1  GGGAATGAGATGTCCCTTTGCTGATAAAGAGATGAACTTGTACATGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAGATGTCCCTTTGCTGATAAAGAGATGAACTTGTACATGTTTG  300

seq1  CACAGCAGAGGAGAACTGTGAGTCTTCTCTTCTGATTTTCATATTTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAGGAGAACTGTGAGTCTTCTCTTCTGATTTTCATATTTATCC  350

seq1  TGGTGCCTCACTGCTTGCACCTTGGTTTTGGAAGTTCCTAGCTCTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTCACTGCTTGCACCTTGGTTTTGGAAGTTCCTAGCTCTTCTCT  400

seq1  GCATAGTGTTTTCAGGGCAACATCTTACTTCTCAGCTGAAATGCTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGTTTTCAGGGCAACATCTTACTTCTCAGCTGAAATGCTCCTGT  450

seq1  CCACGCACAAGCAGAAACTGCTCCCAACAGAGCCGTTTCCTTTCTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCACAAGCAGAAACTGCTCCCAACAGAGCCGTTTCCTTTCTTCTCC  500

seq1  ACCCTCCTGCTAGCTCCTGGGAGAACTGCAGTGTGGAACCTGGTTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTGCTAGCTCCTGGGAGAACTGCAGTGTGGAACCTGGTTTCTGA  550

seq1  GCTGGGTTCTGCTGGGTGGTGGCAGGGGCTTTATCTGGGTGCCTATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCTGCTGGGTGGTGGCAGGGGCTTTATCTGGGTGCCTATGTGC  600

seq1  ATCCCTTAATTTTGTGTTTATATCTTATAAAAACATAAAAAAATGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTAATTTTGTGTTTATATCTTATAAAAACATAAAAAAATGCATCA  650

seq1  AAATAAGCTCACAGGGACCGTTTGGACTGAAGAACTAGAAACTGCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTCACAGGGACCGTTTGGACTGAAGAACTAGAAACTGCTTTTT  700

seq1  GGGCACATAGCTGGATAATTTAGGGCTAGCTGTCCGGTTTTTGGATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAGCTGGATAATTTAGGGCTAGCTGTCCGGTTTTTGGATAAGG  750

seq1  GAATGGGAGCCAGCAGAGCAGAACTGATTTGCATAGCATTGTGCCATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAGCCAGCAGAGCAGAACTGATTTGCATAGCATTGTGCCATCAG  800

seq1  AAGCGACTGTTCTGGCTTGGAGCTTGGGAACCTTTACTCCTTGCCCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACTGTTCTGGCTTGGAGCTTGGGAACCTTTACTCCTTGCCCAGTG  850

seq1  CTGTTTGTAACTGACAACTCCTTGATGTTAGAAGCAGCAGCCTCACAATG  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTTTGTAACTGACAACTCCTTGATG-TAGAAGCAGCAGCCTCACAATG  899

seq1  CAGTCTGAAGAGCCTGAGAATTGGTTACCATTTGGAAAAGGACTCACCTC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGTCTGAAGAGCCTGAGAATTGGTTACCATTTGGAAAAGGACTCA-CTC  948

seq1  ATCTTAGAATAGCTTTATTAGTGACAGGATAGTAAGTTCAAACATGACAT  1000
      ||||||| ||||||||| |||||||||||||||||||   ||||||||||
seq2  ATCTTAG-ATAGCTTTA-TAGTGACAGGATAGTAAGT--CAACATGACAT  994

seq1  GGGGAACCAGAAACCAAAGGTACATTTGGGGTCTCCTCTCTGAGTGTCCA  1050
      ||||||||||||  | |||||||| |||||| |||| |||||||||||||
seq2  GGGGAACCAGAA--CCAAGGTACA-TTGGGGCCTCC-CTCTGAGTGTCCA  1040

seq1  CCTAATATCATGTCTGTCTTTCATTTTTCTCTCCCTTGATTTATCTTGAG  1100
      ||||| | || ||||| |||  |  |||||||||||||| ||||| || |
seq2  CCTAA-AACA-GTCTGGCTTCAA--TTTCTCTCCCTTGA-TTATC-TGGG  1084

seq1  TCACTTTGAC  1110
      || |||||||
seq2  TC-CTTTGAC  1093