BAC Information

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BAC

Clone NameB6Ng01-021F23
Chromosome16 (Build37)
Map Location 71,664,418 - 71,665,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021F23.bB6Ng01-021F23.g
ACCDH853895DH853896
length1,200824
definitionDH853895|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F23, 5' end.DH853896|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgtaccccattattaatagggttatttcattc
tctgaagtttaacttattcagttctttgaatataatacatattggccctc
tatcagatgtaggtttggtaagtttttttttttctcccaatttgttagtt
tgccattttgtcctactgacagtgtcctttgccttatagaagttttgcaa
tcttatgaggtctcttttatcaattcttgatcttagagcataaaacattg
gtgttctgttcaggaattcttcccctgtgcccatgtattcgaagcttttc
cccaatttctcttctactactttcagtgtgtctggttttatgtagaggtc
tttgatccacttggacttgagctttgtacaaggagatacgatttgcatac
ttctacatgctgatcatcaggagaaccaacatttctgttaaatatgcagc
tagagccttggtctctccatgtgtactctttcctcggtagtttagtccct
ggatgctctgaggagtctggttagttgatgttgttattcctcctgtgggg
ctgcaaacccctttagctccttcagtcctttttctaacttcccctttggg
gaccttatgctcagtctgatggttggctgggagcatccacctctatattt
gtcaggcactgacagagcatctcaggagacagctatatgaggatattgtc
aacaagcatgtctttacatcagcaatagtgtatgggtttcgtgtctacag
atgggatggatccttaggtagggcagtctctggatgatctttgcttcagt
ctctgctccactctttgtccctgcatttccgtagaaccagaataattctg
ggttaaaatttttgagattggtgactgtgcccaaccatcaactgggagct
atgcctatccactgttatagactctacatgttctctctccctttgtggct
atttcagctaagatcatcccagtttggtttctgaaaactcatgcttcctg
gcatctgggacttcattgctaccccagttcccatccccccacggctaatg
gatcttcaatcactgaccctgtaccttgctcccactcattatatgtgagt
tactgaatagagggcaatgaaagatctgagacgtggattccttttccccg
tggatgtatcttattgccagaaatgccttgagcattacaagtcacggggc

gaattctcttctcaaaaaaaatgtgtaagtaattgatgttgcagaaaata
aaacatgtttttcataggaagaggaaaaatttcctgtgttctggaatata
caaaattaaaccaaataattaatatactattaaagaagataccaatacat
ttagcatgtgtggtgacatggaagacagtatgaatgagtgatgtagatac
aggcaaaattctaagacatcagttaaagaggttaagatgtgttttattgc
taaaggcacagttaggccctgagaatggcaaaaaaaaatatgataattac
gatattgaagattccaggactgaagaaggtccctgctggccactgagcaa
agccagcatgaaacaggttctttctgttttgttttgttgttttgttattt
ttttttaatcaaaatgatctttgtcatttaaaccattaagaattgatatt
gctgtttcttttttgaccacttgacactatattagaggagagtgggcaat
agagagaaaggtcagtgctttgttagaggaattccctgagagtaagggta
tatgtcatattaggattattagatcctgagcttctattctcaaaataaca
aacactcagttttggaaacagttgaatctttttttatttggtaggttttt
tgtttttttagttttgttgtatagaatttctgagctttgtgcacagaatt
aggtcagctaaaagtcatacattttaaaaatttcatttaaaatataaaat
cattagcctaatagtctattacccacataaatttagataaatatgtttat
ttttgtgtataagatgtgtacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71664418_71665234
seq2: B6Ng01-021F23.g_68_891

seq1  GAATTCTCTTCTCAAAAAAAATGTGTAAGTAATTGATGTTGCAGAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCAAAAAAAATGTGTAAGTAATTGATGTTGCAGAAAATA  50

seq1  AAACATGTTTTTCATAGGAAGAGGAAAAATTTCCTGTGTTCTGGAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTTTCATAGGAAGAGGAAAAATTTCCTGTGTTCTGGAATATA  100

seq1  CAAAATTAAACCAAATAATTAATATACTATTAAAGAAGATACCAATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAACCAAATAATTAATATACTATTAAAGAAGATACCAATACAT  150

seq1  TTAGCATGTGTGGTGACATGGAAGACAGTATGAATGAGTGATGTAGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGTGTGGTGACATGGAAGACAGTATGAATGAGTGATGTAGATAC  200

seq1  AGGCAAAATTCTAAGACATCAGTTAAAGAGGTTAAGATGTGTTTTATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATTCTAAGACATCAGTTAAAGAGGTTAAGATGTGTTTTATTGC  250

seq1  TAAAGGCACAGTTAGGCCCTGAGAATGGCAAAAAAAAATATGATAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCACAGTTAGGCCCTGAGAATGGCAAAAAAAAATATGATAATTAC  300

seq1  GATATTGAAGATTCCAGGACTGAAGAAGGTCCCTGCTGGCCACTGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAAGATTCCAGGACTGAAGAAGGTCCCTGCTGGCCACTGAGCAA  350

seq1  AGCCAGCATGAAACAGGTTCTTTCTGTTTTGTTTTGTTGTTTTGTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCATGAAACAGGTTCTTTCTGTTTTGTTTTGTTGTTTTGTTATTT  400

seq1  TTTTTTAATCAAAATGATCTTTGTCATTTAAACCATTAAGAATTGATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATCAAAATGATCTTTGTCATTTAAACCATTAAGAATTGATATT  450

seq1  GCTGTTTCTTTTTTGACCACTTGACACTATATTAGAGGAGAGTGGGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTTTTTTGACCACTTGACACTATATTAGAGGAGAGTGGGCAAT  500

seq1  AGAGAGAAAGGTCAGTGCTTTGTTAGAGGAATTCCCTGAGAGTAAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGGTCAGTGCTTTGTTAGAGGAATTCCCTGAGAGTAAGGGTA  550

seq1  TATGTCATATTAGGATTATTAGATCCTGAGCTTCTATTCTCAAAATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATATTAGGATTATTAGATCCTGAGCTTCTATTCTCAAAATAACA  600

seq1  AACACTCAGTCTTGGAAACAGTTGAATC-TTTTTTATTTGGTAGG-TTTT  648
      |||||||||| ||||||||||||||||| |||||||||||||||| ||||
seq2  AACACTCAGTTTTGGAAACAGTTGAATCTTTTTTTATTTGGTAGGTTTTT  650

seq1  TGTTTTTTTAGTTTTGTTGTATAGAA-TTCTGAGC-TTGTGCACAGAATT  696
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TGTTTTTTTAGTTTTGTTGTATAGAATTTCTGAGCTTTGTGCACAGAATT  700

seq1  AGGTCAGCT-AAAGTCATACATTT--AAAAATTCA-TTAAAATATAAAAT  742
      ||||||||| ||||||||||||||  |||| |||| ||||||||||||||
seq2  AGGTCAGCTAAAAGTCATACATTTTAAAAATTTCATTTAAAATATAAAAT  750

seq1  CACTAGCCTAATAGTCTATATACCCACATAAGTTAAGATAAATTATGTTT  792
      || |||||||||||||||| ||||||||||| || ||||||| |||||||
seq2  CATTAGCCTAATAGTCTAT-TACCCACATAAATTTAGATAAA-TATGTTT  798

seq1  A-ATATGTGTAAAAGATGTGTACATG  817
      |  | |||||| ||||||||||||||
seq2  ATTTTTGTGTATAAGATGTGTACATG  824