BAC Information

Click to search

BAC

Clone NameB6Ng01-021I05
Chromosome16 (Build37)
Map Location 17,070,943 - 17,181,403
singlet/doubletdoublet
Overlap geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021I05.bB6Ng01-021I05.g
ACCDH853996DH853997
length1,001939
definitionDH853996|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I05, 5' end.DH853997|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,180,394 - 17,181,403)(17,070,943 - 17,071,891)
sequence
gaattcagactgcctaatttcaatggcaagtacctttagcctctgaactg
tctcaccagcttttctaagttgactcctttccttcattacttgtaataaa
gcctttggactttaccctctgcatttacttggatttcttgaaattctttc
ccaattcatcattatcaggatcatctcagttttaggggcactgccatctc
tcagatctttagatagaacctctgaatgagcactgtagattttcagtttt
ccttagtgaaggtggaggcagttgttgccctcagagccatcttgggcaat
gcaggaactttagcatcctggtcattctagtgccagtggttcccagctag
gtctacagaggctattaatttcagtagggtgtagccacgatgtctggcat
ctcttttatatgtgagactcagaatactgagatgcataatcctgttctgg
atcctgttgttgccctattgagaaatgcttttttttttaatgtttttagt
aaatacttatttattattatacataagtacactgtagttgtcttcagacg
caccagaagagcgcatcagatctcatgggtggtgtgagccaccatctggt
tgctgggaattgaactcaggacctttggaagagcagtcagtgctcttacc
tgctgagtcagccctgaaatgctcttctattaggctacccagtcctctct
gcaggtgacagttctctcacttcatctttttttttttttttttttaaagt
aaattttttttttaaagatttatttatttattatatgtaagtacactgta
gctgtcctcagacactccagtcagatctcgttatggatagttgtgggcca
ccatgtggttgctgggattgaactcctgaccttcggaagagcagtcggtg
cttcttacccactgagccatctcaccagccctcacttcatctttttgttt
tgttttgagacaggtttctctggtagccttgctgtcctaaagctactcac
t
gaattctgttttttgatagataatagacgttgaaaacatcatttttcagc
ccaaggtctttctaattcagttgccttataagtatccacaatgtattcac
cttaactaatgtatcttgtcaaagaattgaccatactcctcctcgctccg
ctgaagttccaagaccaggctcacctcctctggggaacttctccaggccc
ctctgagtaagccaccctcacccatcacccagggccctttacctctgctg
tgttctggtagatgtgttaacaaatgtttgctgagtacccgtctccctct
cccctaggggctggtccagtgggtgtctgtgtgcatgtgtatggtggggt
acaaataaataaacacacacacacatgtatattcaccgtgtgtgtgcctg
gtatctagagaagccagaagagggcatcggatcccctagagccgaagtta
tggatcctccacaagagcagcaggtgctaaaggatgtcagcccatctctc
cagccatactgtgggctcttaaaaaagtcaggggtgctgtatttgaagag
ttttgctaccaggatccctaggtctatgtgttcctagccaagggactatg
tggttagcatgtcttcttagggattagaccaaaatcttgacttaccacag
atatatagcagcccaggggctggcccatatgaaacactaaaaatacatac
atacatacagacagacagacagacagttgaatcaatgccagtaatcaatc
tgaatagaagtcttttcttttcctgtttttttttttgtttgtttgttttg
ttttttttttactaagcattttcggcaagtctctaccacaaccacagctc
caactttataaataaacttaattttataaagagctggggtgtggctgggt
ggtaggctcaccatggtgaagcctggttcccccccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17180394_17181403
seq2: B6Ng01-021I05.b_45_1045 (reverse)

seq1  AGTGAGTGAGCTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCA  50
      ||||||| |||| |||||||| || |||||| |||||||| |||||||| 
seq2  AGTGAGT-AGCTTTAGGACAG-CAAGGCTAC-CAGAGAAA-CCTGTCTC-  45

seq1  AAAACAAAAACAAAAAAGATGAAGTGAGGGCTGGTGAGATGGCTCAGTGG  100
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAA--CAAAAAGATGAAGTGAGGGCTGGTGAGATGGCTCAGTGG  93

seq1  GTAAG-AGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGC  149
      ||||| |||| ||||||||||||||||||||||||||||| |||||||||
seq2  GTAAGAAGCA-CCGACTGCTCTTCCGAAGGTCAGGAGTTC-AATCCCAGC  141

seq1  AACCACATGGTGGCTCACAACTATCCATAACGAGATCTGACTGGAGTGTC  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCCCACAACTATCCATAACGAGATCTGACTGGAGTGTC  191

seq1  TGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAA  241

seq1  AAAAAAATTTACTTTAAAAAAAAAAAAAAAAAAAAGATGAAGTGAGAGAA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTACTTT-AAAAAAAAAAAAAAAAAAAGATGAAGTGAGAGAA  290

seq1  CTGTCACCTGCAGAGAGGACTGGGTAGCCTAATAGAAGAGCATTTCAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTGCAGAGAGGACTGGGTAGCCTAATAGAAGAGCATTTCAGGG  340

seq1  CTGACTCAGCAGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCAGCAGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTC  390

seq1  AATTCCCAGCAACCAGATGGTGGCTCACACCACCCATGAGATCTGATGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAACCAGATGGTGGCTCACACCACCCATGAGATCTGATGCG  440

seq1  CTCTTCTGGTGCGTCTGAAGACAACTACAGTGTACTTATGTATAATAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGCGTCTGAAGACAACTACAGTGTACTTATGTATAATAATA  490

seq1  AATAAGTATTTACTAAAAACATTAAAAAAAAAAGCATTTCTCAATAGGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATTTACTAAAAACATTAAAAAAAAAAGCATTTCTCAATAGGGC  540

seq1  AACAACAGGATCCAGAACAGGATTATGCATCTCAGTATTCTGAGTCTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGGATCCAGAACAGGATTATGCATCTCAGTATTCTGAGTCTCAC  590

seq1  ATATAAAAGAGATGCCAGACATCGTGGCTACACCCTACTGAAATTAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGAGATGCCAGACATCGTGGCTACACCCTACTGAAATTAATAG  640

seq1  CCTCTGTAGACCTAGCTGGGAACCACTGGCACTAGAATGACCAGGATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGACCTAGCTGGGAACCACTGGCACTAGAATGACCAGGATGCT  690

seq1  AAAGTTCCTGCATTGCCCAAGATGGCTCTGAGGGCAACAACTGCCTCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGCATTGCCCAAGATGGCTCTGAGGGCAACAACTGCCTCCAC  740

seq1  CTTCACTAAGGAAAACTGAAAATCTACAGTGCTCATTCAGAGGTTCTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTAAGGAAAACTGAAAATCTACAGTGCTCATTCAGAGGTTCTATC  790

seq1  TAAAGATCTGAGAGATGGCAGTGCCCCTAAAACTGAGATGATCCTGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCTGAGAGATGGCAGTGCCCCTAAAACTGAGATGATCCTGATAA  840

seq1  TGATGAATTGGGAAAGAATTTCAAGAAATCCAAGTAAATGCAGAGGGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATTGGGAAAGAATTTCAAGAAATCCAAGTAAATGCAGAGGGTAA  890

seq1  AGTCCAAAGGCTTTATTACAAGTAATGAAGGAAAGGAGTCAACTTAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGGCTTTATTACAAGTAATGAAGGAAAGGAGTCAACTTAGAAA  940

seq1  AGCTGGTGAGACAGTTCAGAGGCTAAAGGTACTTGCCATTGAAATTAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGAGACAGTTCAGAGGCTAAAGGTACTTGCCATTGAAATTAGGC  990

seq1  AGTCTGAATTC  1010
      |||||||||||
seq2  AGTCTGAATTC  1001

seq1: chr16_17070943_17071891
seq2: B6Ng01-021I05.g_70_1008

seq1  GAATTCTG-TTTTGGATAGATAATAGACGTTGAAAACATCATTTTTCAGC  49
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTTTGATAGATAATAGACGTTGAAAACATCATTTTTCAGC  50

seq1  CCAAGGTCTTTCTAATTCAGTTGCCTTATAAGTATCCACAATGTATTCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTTTCTAATTCAGTTGCCTTATAAGTATCCACAATGTATTCAC  100

seq1  CTTAACTAATGTATCTTGTCAAAGAATTGACCATACTCCTCCTCGCTCCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTAATGTATCTTGTCAAAGAATTGACCATACTCCTCCTCGCTCCG  150

seq1  CTGAAGTTCCAAGACCAGGCTCACCTCCTCTGGGGAACTTCTCCAGGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTCCAAGACCAGGCTCACCTCCTCTGGGGAACTTCTCCAGGCCC  200

seq1  CTCTGAGTAAGCCACCCTCACCCATCACCCAGGGCCCTTTACCTCTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTAAGCCACCCTCACCCATCACCCAGGGCCCTTTACCTCTGCTG  250

seq1  TGTTCTGGTAGATGTGTTAACAAATGTTTGCTGAGTACCCGTCTCCCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGTAGATGTGTTAACAAATGTTTGCTGAGTACCCGTCTCCCTCT  300

seq1  CCCCTAGGGGCTGGTCCAGTGGGTGTCTGTGTGCATGTGTATGGTGGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGGGCTGGTCCAGTGGGTGTCTGTGTGCATGTGTATGGTGGGGT  350

seq1  ACAAATAAATAAACACACACACACATGTATATTCACCGTGTGTGTGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAATAAACACACACACACATGTATATTCACCGTGTGTGTGCCTG  400

seq1  GTATCTAGAGAAGCCAGAAGAGGGCATCGGATCCCCTAGAGCCGAAGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGAGAAGCCAGAAGAGGGCATCGGATCCCCTAGAGCCGAAGTTA  450

seq1  TGGATCCTCCACAAGAGCAGCAGGTGCTAAAGGATGTCAGCCCATCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTCCACAAGAGCAGCAGGTGCTAAAGGATGTCAGCCCATCTCTC  500

seq1  CAGCCATACTGTGGGCTCTTAAAAAAGTCAGGGGTGCTGTATTTGAAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATACTGTGGGCTCTTAAAAAAGTCAGGGGTGCTGTATTTGAAGAG  550

seq1  TTTTGCTACCAGGATCCCTAGGTCTATGTGTTCCTAGCCAAGGGACTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTACCAGGATCCCTAGGTCTATGTGTTCCTAGCCAAGGGACTATG  600

seq1  TGGTTAGCATGTCTTCTTAGGGATTAGACCAAAATCTTGACTTACCACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGCATGTCTTCTTAGGGATTAGACCAAAATCTTGACTTACCACAG  650

seq1  ATATATAGCAGCCCAGGGGCTGGCCCATATGAAACACTAAAAATACATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGCAGCCCAGGGGCTGGCCCATATGAAACACTAAAAATACATAC  700

seq1  ATACATACAGACAGACAGACAGACAGTTGAATCAATGCCAGTAATCAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAGACAGACAGACAGACAGTTGAATCAATGCCAGTAATCAATC  750

seq1  TGAATAGAAGTCTTTTCTTTTCCTGTTTTTTTTTTTGTTTGTTTGTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAATAGAAGTCTTTTCTTTTCCTGTTTTTTTTTTTGTTTGTTTGTTTT-  799

seq1  GTTTTTTTTTTTACTTATGCATTTTCGGCAAGTGCTCTACCACAACCACA  849
        |||||||||||| || ||||||||||||||| ||||||||||||||||
seq2  -GTTTTTTTTTTAC-TAAGCATTTTCGGCAAGT-CTCTACCACAACCACA  846

seq1  GCTCCAACTTTATAAATAAACTTAATTTTATAAAAGAGCTGGGGGTGTGG  899
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  GCTCCAACTTTATAAATAAACTTAATTTTAT-AAAGAGCT-GGGGTGTGG  894

seq1  CTGGGTGGTAGGGCTCAGCATGTGTGAGGCCCTTGGTCTCCCCCCCACTA  949
      |||||||||| |||||| |||| |||| |||  |||| ||||||||||||
seq2  CTGGGTGGTA-GGCTCACCATG-GTGAAGCC--TGGT-TCCCCCCCACTA  939