BAC Information

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BAC

Clone NameB6Ng01-022B12
Chromosome16 (Build37)
Map Location 88,968,851 - 89,031,000
singlet/doubletdoublet
Overlap geneEG621595, LOC100040167, 1110032D16Rik, LOC100040201
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10
Downstream geneKrtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022B12.bB6Ng01-022B12.g
ACCDH854408DH854409
length1971,096
definitionDH854408|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B12, 5' end.DH854409|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,030,804 - 89,031,000)(88,968,851 - 88,969,726)
sequence
gaattctgtacattcattgtataaggaactaggtcagaagtgagattacc
tttgtgttcagcacagctaccttggttagtgttgaaagagaatgaagaag
tctcccaacagagcattttcctactaatgtttaaagcaaacacagctata
tattcatttacattgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtg
gaattcacgcagttgaatccttctcaacagtctgtgttgcgggaacactt
cattaccaccgttccccagctgaggagttctgaatccaggctggatcctt
ctcaacagtctgttttacgggaacacttcattaccatgacccgcagttct
ggttccggaatgagggatcttccttgcgccggtgatggtaactgtcctgg
gttttcttgtcccgggtttttctcgtcccaggtcttctcgtcccgggtct
cagcaccaactcttacccgcgttctcgcgaccggccaggaagaacgcagc
aaaccagaatcttctgcggcaaaagctttattgcttacatcttcaggagc
cagagagcaagagagcaagagctctattgcttacatctttaggagccaga
gcgcaagagcgcaagacagcaagagttcaagcgctttattgcttacatct
ttaggagccagagagcaagagagcaagagccagagcaagagcgcaagaga
gagaatggcgaaaccccatccctttttaaggagaattattctccgcctag
gacgtattactccctgattggctgcagcccatcggccgagttgtcgtcac
ggggaaggcagagcacatggggtggaaaactacccttggcacatgcgcag
attatttgtttaccacagaacacaggatgtcagcgccatcttgtaacggc
gaatgtgagggcggctccccacaggtactaatggtgacggcacaggtaaa
ccagccctgagggtgtaagagccagccagttgaagtctttttcctagcgt
tgtgtaaaatttagtaaggctttgagtacatattcacatcaggatatgga
aactgaatgtcttaagactcatacaaataacttatagacagcgctatgat
gaacttttatgaccagaaatgcaaataatcttcatttgcacaaagtatta
tgagtaaaacaaatagaaaagatcactagttagttggtaatttcaggaga
ggaaggagatagaagagcaaggatcattgcatgcaccatatcaaattagg
tggtgaaaacatgagctgggctcgttataaaaagccttgctgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89030804_89031000
seq2: B6Ng01-022B12.b_44_240 (reverse)

seq1  CACACAAACACACACACACACACACACACACACAATGTAAATGAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACACACACACACACACACACACACAATGTAAATGAATATAT  50

seq1  AGCTGTGTTTGCTTTAAACATTAGTAGGAAAATGCTCTGTTGGGAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTTGCTTTAAACATTAGTAGGAAAATGCTCTGTTGGGAGACTT  100

seq1  CTTCATTCTCTTTCAACACTAACCAAGGTAGCTGTGCTGAACACAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTCTTTCAACACTAACCAAGGTAGCTGTGCTGAACACAAAGGT  150

seq1  AATCTCACTTCTGACCTAGTTCCTTATACAATGAATGTACAGAATTC  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACTTCTGACCTAGTTCCTTATACAATGAATGTACAGAATTC  197

seq1: chr16_88968851_88969726
seq2: B6Ng01-022B12.g_294_1163

seq1  CCCAGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTACCCGCGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTACCCGCGTTCTC  50

seq1  GCGACCGGCCAGGAAGAACGCAGCAAACCAGAATCTTCTGCGGCAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCGGCCAGGAAGAACGCAGCAAACCAGAATCTTCTGCGGCAAAAGC  100

seq1  TTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGCTCTA  150

seq1  TTGCTTACATCTTTAGGAGCCAGAGCGCAAGAGCGCAAGACAGCAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACATCTTTAGGAGCCAGAGCGCAAGAGCGCAAGACAGCAAGAGT  200

seq1  TCAAGCGCTTTATTGCTTACATCTTTAGGAGCCAGAGAGCAAGAGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCGCTTTATTGCTTACATCTTTAGGAGCCAGAGAGCAAGAGAGCAA  250

seq1  GAGCCAGAGCAAGAGCGCAAGAGAGAGAATGGCGAAACCCCATCCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGCAAGAGCGCAAGAGAGAGAATGGCGAAACCCCATCCCTTTT  300

seq1  TAAGGAGAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAATTATTCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCA  350

seq1  GCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGGA  400

seq1  AAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACAGAACACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACAGAACACAGG  450

seq1  ATGTCAGCGCCATCTTGTAACGGCGAATGTGAGGGCGGCTCCCCACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCGCCATCTTGTAACGGCGAATGTGAGGGCGGCTCCCCACAGGT  500

seq1  ACTAATGGTGACGGCACAGGTAAACCAGCCCTGAGGGTGTAAGAGCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTGACGGCACAGGTAAACCAGCCCTGAGGGTGTAAGAGCCAGC  550

seq1  CAGTTGAAGTCTTTTTCCTAGCGTTGTGTAAAATTTAGTAAGGCTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGTCTTTTTCCTAGCGTTGTGTAAAATTTAGTAAGGCTTTGAG  600

seq1  TACATATTCACATCAGGATATGGAAACTGAATGTCTTAAGACTCAATACA  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACATATTCACATCAGGATATGGAAACTGAATGTCTTAAGACTC-ATACA  649

seq1  AATAACTTATAGACAGCGCTATGATGAACTTTTAATGACCAGAAATGCAA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATAACTTATAGACAGCGCTATGATGAACTTTT-ATGACCAGAAATGCAA  698

seq1  ATAATCTTCATTTGCACAAAGTATTATGAGTAAAACAAATAGAAAAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTCATTTGCACAAAGTATTATGAGTAAAACAAATAGAAAAGATC  748

seq1  ACTAGTTAGTTGGTAATTTCAGGGAGA-GAAAGAGATAGAGAGGCAAGGA  799
      ||||||||||||||||||||| ||||| ||| ||||||||   |||||||
seq2  ACTAGTTAGTTGGTAATTTCA-GGAGAGGAAGGAGATAGAAGAGCAAGGA  797

seq1  TCATTGCATGCACCAATATTCAAAATCAGGTGGTGAAGACATGAGCT-GG  848
      |||||||||||||| ||||   |||| |||||||||| ||||||||| ||
seq2  TCATTGCATGCACC-ATAT--CAAATTAGGTGGTGAAAACATGAGCTGGG  844

seq1  CTCGGTTATTAAGAGCACTTGCTGACTG  876
      ||| ||||| || ||| |||||||||||
seq2  CTC-GTTATAAAAAGC-CTTGCTGACTG  870