BAC Information

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BAC

Clone NameB6Ng01-022B16
Chromosome16 (Build37)
Map Location 24,737,107 - 24,881,408
singlet/doubletdoublet
Overlap geneLpp
Upstream geneLOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik, Trp63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022B16.bB6Ng01-022B16.g
ACCDH854416DH854417
length1,061888
definitionDH854416|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B16, 5' end.DH854417|Mus musculus domesticus DNA, BAC clone: B6Ng01-022B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,737,107 - 24,738,172)(24,880,521 - 24,881,408)
sequence
gaattcacatgctcatctctgtgcaaggaaccctggttatgccccagcct
ttcatggctgtcatcatagataccttaaagctgttcagcaaactcctctt
cctagctcattgtcaggaccttgctgttttcttccgtatctttgctctta
cacgtacgaagcactcacgttccatcttgtgggtattttctttcccgctt
ttaaggatcattctcacggcacccactgtaagttccaaagaacccttgcc
tattgaccctgctctcttgtcatatgttgtggaatgctttggccatgcta
ggcattagtgaatgtctgagaactgttcataacgtggctgtctcacttac
tgcatgtggattttcatacgctgaccacagctttcattttgtagaagaaa
acaaaatataaggctcttgtttctgtggtggctccttgagtagctgctgc
ttctgcatggctgtttgtgcaagcaaatcaagtggcagtttacgaggagg
gacagccccaggccgattcccttctcttggggaactcaaaatggtatggt
ttgtctttcctcttcaaatcttgatctctgcaaacctagtcctttcccct
aacctccatatagttgtatctcttttacatggagaaggagaattctaacc
tcctgcctcaggtatttacagaagtagaacttgggtaggggcgggcaagc
acacgtgtgacagaagtttcagcattcatgaggagccactgtactttact
gttaagcttcgggggattttttttttttaaacagttctacatggggaaag
tcggttgacgatttttaaaaggaagcgtgccctttttcattagctccttt
tacctcatgctgagtcatggatgagagagcatttgtaggcagctgagatg
caggaagattattcctgtcacttacatttgcaggttgttatgctttccag
aaaactctttcagtgggtgcaaagtgataatctcccccttgaagctgaca
gaaaagcttcctgatacaagaaattgaaggggtgggatttctttataaac
agggtactctt
gaattcttctaagatatatatggaaatagaacatatacacaaaacagtaa
aatttatgtatgtctcaatgctgtaagaaattactagacagaaaccactg
aataagatgcaggtaggatgtgagtagatggattctgaggtaagtacctt
taagcactagcaatgccatttataatctcagtgcagtgggtggatgaata
tcaggcatagctcacacaagctgatcacctcagaactcaaagatccatgg
ggatggagtcagcacctccgtcctttctcctcatgcgtctctgtaaaatc
ctctctgctgaactgccatctgcatctgattccatctccagcacttgctt
agcaacactgagctctccaagtgctgaagtgacgtctagggaacagttat
taatatccgtatgtatgcacacagtatgtgaaaatatgcaggattcaaag
cgattagtgtattacttggaggtaatgcttcccacggggactgagctcct
ggagaaagctccccctgctgtgactgcctgccatacccactatcactcac
cggaacatttgggataaaaatggtgtcaattttaaggaaacacacttctc
gatttctttgttaacatttgaataaaacatgagaaggcttctactttcct
cttcccctccttcattcagagaaaaagtcccttcacaaccttactttgtg
tgtgagaggaaatggttgtccttggctaccttcagactggcagaactgct
cagttacaaatattaaagcctaaaatctattctaatgaactctggtgaga
ctcatatcttctaagctgcagacaaatgcttggtaaaagaaaacacgaag
aaactgtcagagtttgatcagcctgaaggacattagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24737107_24738172
seq2: B6Ng01-022B16.b_42_1102

seq1  GAATTCACATGCTCATCTCTGTGCAAGGAACCCTGGTTATGCCCCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCTCATCTCTGTGCAAGGAACCCTGGTTATGCCCCAGCCT  50

seq1  TTCATGGCTGTCATCATAGATACCTTAAAGCTGTTCAGCAAACTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTGTCATCATAGATACCTTAAAGCTGTTCAGCAAACTCCTCTT  100

seq1  CCTAGCTCATTGTCAGGACCTTGCTGTTTTCTTCCGTATCTTTGCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCATTGTCAGGACCTTGCTGTTTTCTTCCGTATCTTTGCTCTTA  150

seq1  CACGTACGAAGCACTCACGTTCCATCTTGTGGGTATTTTCTTTCCCGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACGAAGCACTCACGTTCCATCTTGTGGGTATTTTCTTTCCCGCTT  200

seq1  TTAAGGATCATTCTCACGGCACCCACTGTAAGTTCCAAAGAACCCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATCATTCTCACGGCACCCACTGTAAGTTCCAAAGAACCCTTGCC  250

seq1  TATTGACCCTGCTCTCTTGTCATATGTTGTGGAATGCTTTGGCCATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACCCTGCTCTCTTGTCATATGTTGTGGAATGCTTTGGCCATGCTA  300

seq1  GGCATTAGTGAATGTCTGAGAACTGTTCATAACGTGGCTGTCTCACTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGTGAATGTCTGAGAACTGTTCATAACGTGGCTGTCTCACTTAC  350

seq1  TGCATGTGGATTTTCATACGCTGACCACAGCTTTCATTTTGTAGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGATTTTCATACGCTGACCACAGCTTTCATTTTGTAGAAGAAA  400

seq1  ACAAAATATAAGGCTCTTGTTTCTGTGGTGGCTCCTTGAGTAGCTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATAAGGCTCTTGTTTCTGTGGTGGCTCCTTGAGTAGCTGCTGC  450

seq1  TTCTGCATGGCTGTTTGTGCAAGCAAATCAAGTGGCAGTTTACGAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGGCTGTTTGTGCAAGCAAATCAAGTGGCAGTTTACGAGGAGG  500

seq1  GACAGCCCCAGGCCGATTCCCTTCTCTTGGGGAACTCAAAATGGTATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCCAGGCCGATTCCCTTCTCTTGGGGAACTCAAAATGGTATGGT  550

seq1  TTGTCTTTCCTCTTCAAATCTTGATCTCTGCAAACCTAGTCCTTTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTCCTCTTCAAATCTTGATCTCTGCAAACCTAGTCCTTTCCCCT  600

seq1  AACCTCCATATAGTTGTATCTCTTTTACATGGAGAAGGAGAATTCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATATAGTTGTATCTCTTTTACATGGAGAAGGAGAATTCTAACC  650

seq1  TCCTGCCTCAGGTATTTACAGAAGTAGAACTTGGGTAGGGGCGGGCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCAGGTATTTACAGAAGTAGAACTTGGGTAGGGGCGGGCAAGC  700

seq1  ACACGTGTGACAGAAGTTTCAGCATTCATGAGGAGCCACTGTACTTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTGACAGAAGTTTCAGCATTCATGAGGAGCCACTGTACTTTACT  750

seq1  GTTAAGCTTCGGGGGATTTTTTTTTTTTAAACAGTTCTACATGGGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTTCGGGGGATTTTTTTTTTTTAAACAGTTCTACATGGGGAAAG  800

seq1  TCGGTTGACGATTTTTAAAAGGAAGCGTGCCCTTTTTCATTAGCTCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTGACGATTTTTAAAAGGAAGCGTGCCCTTTTTCATTAGCTCCTTT  850

seq1  TACCTCATGCTGAGTCATGGATGAGAGAGCATTTGTAGGCAGCTGAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATGCTGAGTCATGGATGAGAGAGCATTTGTAGGCAGCTGAGATG  900

seq1  CAGGAAGAATAATCCTGTCACTTACACTTGCAGGTTGTTATGCTTTCCAG  950
      |||||||| || |||||||||||||| |||||||||||||||||||||||
seq2  CAGGAAGATTATTCCTGTCACTTACATTTGCAGGTTGTTATGCTTTCCAG  950

seq1  AAAACTCTTTCAGTGGGTTGCAAAAGTGATTAATCTCCCCCTTGAAGCTG  1000
      ||||||||||||||||| ||| ||||||| ||||||||||||||||||||
seq2  AAAACTCTTTCAGTGGG-TGC-AAAGTGA-TAATCTCCCCCTTGAAGCTG  997

seq1  ACGAAGAGGCTCTCTGATAACAGGAAATTGAAGGGGTGGGATTTCTTTAG  1050
      ||  | | |||  ||||| ||| |||||||||||||||||||||||||| 
seq2  ACAGAAAAGCTTCCTGAT-ACAAGAAATTGAAGGGGTGGGATTTCTTTAT  1046

seq1  AGAACAGGGTACTCTT  1066
      | ||||||||||||||
seq2  A-AACAGGGTACTCTT  1061

seq1: chr16_24880521_24881408
seq2: B6Ng01-022B16.g_68_955 (reverse)

seq1  CTCTAATGTTCTTTCAGGCTGATC-AACTCTGACAGTTTCTTCGTGTTTT  49
      |||||||| || |||||||||||| |||||||||||||||||||||||||
seq2  CTCTAATG-TCCTTCAGGCTGATCAAACTCTGACAGTTTCTTCGTGTTTT  49

seq1  CTTTTACCAAGCATTTGTCTGCAGCTTAGAAGATATGAGTCTCACCAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCAAGCATTTGTCTGCAGCTTAGAAGATATGAGTCTCACCAGAG  99

seq1  TTCATTAGAATAGATTTTAGGCTTTAATATTTGTAACTGAGCAGTTCTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGAATAGATTTTAGGCTTTAATATTTGTAACTGAGCAGTTCTGC  149

seq1  CAGTCTGAAGGTAGCCAAGGACAACCATTTCCTCTCACACACAAAGTAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAAGGTAGCCAAGGACAACCATTTCCTCTCACACACAAAGTAAG  199

seq1  GTTGTGAAGGGACTTTTTCTCTGAATGAAGGAGGGGAAGAGGAAAGTAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAGGGACTTTTTCTCTGAATGAAGGAGGGGAAGAGGAAAGTAGA  249

seq1  AGCCTTCTCATGTTTTATTCAAATGTTAACAAAGAAATCGAGAAGTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCATGTTTTATTCAAATGTTAACAAAGAAATCGAGAAGTGTGT  299

seq1  TTCCTTAAAATTGACACCATTTTTATCCCAAATGTTCCGGTGAGTGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAATTGACACCATTTTTATCCCAAATGTTCCGGTGAGTGATAG  349

seq1  TGGGTATGGCAGGCAGTCACAGCAGGGGGAGCTTTCTCCAGGAGCTCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGGCAGGCAGTCACAGCAGGGGGAGCTTTCTCCAGGAGCTCAGT  399

seq1  CCCCGTGGGAAGCATTACCTCCAAGTAATACACTAATCGCTTTGAATCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGGGAAGCATTACCTCCAAGTAATACACTAATCGCTTTGAATCCT  449

seq1  GCATATTTTCACATACTGTGTGCATACATACGGATATTAATAACTGTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTCACATACTGTGTGCATACATACGGATATTAATAACTGTTCC  499

seq1  CTAGACGTCACTTCAGCACTTGGAGAGCTCAGTGTTGCTAAGCAAGTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGTCACTTCAGCACTTGGAGAGCTCAGTGTTGCTAAGCAAGTGCT  549

seq1  GGAGATGGAATCAGATGCAGATGGCAGTTCAGCAGAGAGGATTTTACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAATCAGATGCAGATGGCAGTTCAGCAGAGAGGATTTTACAGA  599

seq1  GACGCATGAGGAGAAAGGACGGAGGTGCTGACTCCATCCCCATGGATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATGAGGAGAAAGGACGGAGGTGCTGACTCCATCCCCATGGATCTT  649

seq1  TGAGTTCTGAGGTGATCAGCTTGTGTGAGCTATGCCTGATATTCATCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGAGGTGATCAGCTTGTGTGAGCTATGCCTGATATTCATCCAC  699

seq1  CCACTGCACTGAGATTATAAATGGCATTGCTAGTGCTTAAAGGTACTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCACTGAGATTATAAATGGCATTGCTAGTGCTTAAAGGTACTTAC  749

seq1  CTCAGAATCCATCTACTCACATCCTACCTGCATCTTATTCAGTGGTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCCATCTACTCACATCCTACCTGCATCTTATTCAGTGGTTTCT  799

seq1  GTCTAGTAATTTCTTACAGCATTGAGACATACATAAATTTTACTGTTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTAATTTCTTACAGCATTGAGACATACATAAATTTTACTGTTTTG  849

seq1  TGTATATGTTCTATTTCCATATATATCTTAGAAGAATTC  888
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTTCTATTTCCATATATATCTTAGAAGAATTC  888