BAC Information

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BAC

Clone NameB6Ng01-022E02
Chromosome16 (Build37)
Map Location 55,335,526 - 55,437,381
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022E02.bB6Ng01-022E02.g
ACCDH854525DH854526
length1,1241,002
definitionDH854525|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E02, 5' end.DH854526|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,335,526 - 55,336,162)(55,436,377 - 55,437,381)
sequence
gaattccaagaaaatggctatcctaccaaaaagcaatctacagattcaat
gaaaatcaccatcaaaatcccaatacaatttttttttacaaatttaaatg
gttaattttcagctttatatgtaaacataaatgcccaaaaatatctttaa
tggtttgtatattcttgggccagggagttgtaccatttggaggtgtggcc
ttgctggaataggtgtgacctggttggagtaagtatgtcactgtgggtgt
gggcttaagatcctaaccctagttacctggaagtcagtcttccactagaa
gcctttggatgaagacatagaactctcagctctgcctgtgccatgcctgc
ctggatactgccatgctcccaccttgatgataatggactgaacctctgaa
cctgtaagccagccccaagtaaatgttttttataaaacttgccttggtca
tggtgtctgttcacagcagtaaaaccctaactaagacaatagctaaaaaa
aaatcctgaatttttaaaaatgctggaggtatcaccattcctgacctcaa
gttgtacaacagagctatagtaataaaaacagccaatactgacatgaaaa
caggccaaaaaacattgatgatagaattgaactgaagaaccagacataaa
cagacacatctatggatagttgattttttttttataaagaagccagaaat
acaactggaaaaaagacagcatctccaaattatggtgctggccaaagtta
atgactttgtatggaagagtctaaatgaatacatacttattaccctgcat
aaaacttaactccagataggtcaaggatctcaacataatacaggatacac
tgaatctgatagaagagaatgtggggaatagttttgaactcgttggcaca
gaaaaggattctctgagcagaacactatagcataggcactaagaaagtaa
tacatggagtctcataaaattggaaagcgtctgtcggcgaaggacagcca
ctgaattttttatcagcagcgtttagaagtattgataatttcataaggta
ttttgtgatatcactcctctcatcaacttccaagaggatcccgcccactt
aacctgtgtggcttttttatttaa
gaattcagttcatcaatagataaagtgacagagaagaaagaattgaggta
gagaatcagggtttagttgttctttagaagttaattctgggctctaagtg
cctcatcccagtgaaacaggttagcagacatttggaaataacaaaggcaa
cgagactgtagaacactttatttgaagacatgtggggagggtaatttcag
aggaaaaatgtgggaggagagtacattttaaaggacccttggagaaggaa
tgaaagccaaaagcatgaagagttcaatgacatcatctgggtttggtttg
aatgtgtccctcattcgaggtatgtgtagtgagtgtgaaccccaccatca
tatgttagaagtgggggaatctttaagaggtgattccagtgaagattaag
ttattagggttgctgtccttgaaagagattaatgacgttctcttgggtcc
cttgttaaagttcttcagatagtaagctgtgaaaggatctatttgggctc
cttactttctcttgcttcctgccttgctgtgtctactctccccttcttgc
atatgctcctatcatatgctttatgctgtgttgtgatatagtctcaaagt
tgtttttaaaggctgaacagatggggctactcagtttgggattgccagtc
tctaaaactgttaaataaataaatccctttgctttcttcagtattcagta
tcagaaattttgatataacaacagactataggtcaacactgtcccagaca
gattgctttccccaccaattttgggcatcttctagagagtgccctcttct
agccatttcagtcactacaagttacacttcctcttatgtctgctgtcttt
cccattatccatcagccttggttgtactgacaaacctgtgtgctagtggt
ctgacttactcaggtttggttaactatttaaataaagatttcttggagcc
taaataatacatgtttagatcgtgcaaagtcatggggtggggaagaaagg
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55335526_55336162
seq2: B6Ng01-022E02.b_543_1167

seq1  AAAATCCTGAATTTTTAAAAATGCTGGAGGTATCACCATTCCTGACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGAATTTTTAAAAATGCTGGAGGTATCACCATTCCTGACCTCA  50

seq1  AGTTGTACAACAGAGCTATAGTAATAAAAACAGCCAATACTGACATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACAACAGAGCTATAGTAATAAAAACAGCCAATACTGACATGAAA  100

seq1  ACAGGCCAAAAAACATTGATGATAGAATTGAACTGAAGAACCAGACATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAAAAAACATTGATGATAGAATTGAACTGAAGAACCAGACATAA  150

seq1  ACAGACACATCTATGGATAGTTGATTTTTTTTTTATAAAGAAGCCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACATCTATGGATAGTTGATTTTTTTTTTATAAAGAAGCCAGAAA  200

seq1  TACAACTGGAAAAAAGACAGCATCTCCAAATTATGGTGCTGGCCAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGGAAAAAAGACAGCATCTCCAAATTATGGTGCTGGCCAAAGTT  250

seq1  AATGACTTTGTATGGAAGAGTCTAAATGAATACATACTTATTACCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTGTATGGAAGAGTCTAAATGAATACATACTTATTACCCTGCA  300

seq1  TAAAACTTAACTCCAGATAGGTCAAGGATCTCAACATAATACAGGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAACTCCAGATAGGTCAAGGATCTCAACATAATACAGGATACA  350

seq1  CTGAATCTGATAGAAGAGAATGTGGGGAATAGTTTTGAACTCGTTGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTGATAGAAGAGAATGTGGGGAATAGTTTTGAACTCGTTGGCAC  400

seq1  AGAAAAGGATTCTCTGAGCAGAACACTAATAGCATAGGCACTAAGAAAGG  450
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  AGAAAAGGATTCTCTGAGCAGAACACT-ATAGCATAGGCACTAAGAAA-G  448

seq1  TAATACATGGAGTCTCATAAAAATGGAAAGCGTCTGTCGGGCGAAGGACA  500
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TAATACATGGAGTCTCATAAAATTGGAAAGCGTCTGTC-GGCGAAGGACA  497

seq1  GCCACTGAATTTATTATCAGCAGCGTTTTAGTAGTTATTTGATAATTTCA  550
      |||||||||||| |||||||||||| ||||| |||   ||||||||||||
seq2  GCCACTGAATTTTTTATCAGCAGCG-TTTAGAAGT--ATTGATAATTTCA  544

seq1  TAAGAGTATTTTGTGATAATCACTCCTCTCATCCAAATCTTCCAAGAGGT  600
      |||| |||||||||||| |||||||||||||||   | ||||||||||| 
seq2  TAAG-GTATTTTGTGAT-ATCACTCCTCTCATC---AACTTCCAAGAGG-  588

seq1  ATCCCACCCACTTAACTCTGT-AGGCTTTTTTATTTAA  637
      ||||| |||||||||| ||||  |||||||||||||||
seq2  ATCCCGCCCACTTAAC-CTGTGTGGCTTTTTTATTTAA  625

seq1: chr16_55436377_55437381
seq2: B6Ng01-022E02.g_68_1069 (reverse)

seq1  TACCTTTCCTTCCCACCCCATGACCTCTGCACGATCCTAAAACATGTATT  50
      |||||||| | |||||||||||| || |||||||||   |||||||||||
seq2  TACCTTTCTTCCCCACCCCATGA-CTTTGCACGATC--TAAACATGTATT  47

seq1  ATTTAGGCTCAAAGAATTC-TTATTTAAATAGGTTAACCAAACCTGAGTA  99
      |||||||||| ||||| || ||||||||||| ||||||||||||||||||
seq2  ATTTAGGCTCCAAGAAATCTTTATTTAAATA-GTTAACCAAACCTGAGTA  96

seq1  AGTCAGACCACTAGCACACAGGTTTGTCAGTACAACCAAGGCTGATGGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACCACTAGCACACAGGTTTGTCAGTACAACCAAGGCTGATGGAT  146

seq1  AATGGGAAAGACAGCAGACATAAGAGGAAGTGTAACTTGTAGTGACTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAGACAGCAGACATAAGAGGAAGTGTAACTTGTAGTGACTGAA  196

seq1  ATGGCTAGAAGAGGGCACTCTCTAGAAGATGCCCAAAATTGGTGGGGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGAAGAGGGCACTCTCTAGAAGATGCCCAAAATTGGTGGGGAAA  246

seq1  GCAATCTGTCTGGGACAGTGTTGACCTATAGTCTGTTGTTATATCAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGTCTGGGACAGTGTTGACCTATAGTCTGTTGTTATATCAAAAT  296

seq1  TTCTGATACTGAATACTGAAGAAAGCAAAGGGATTTATTTATTTAACAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATACTGAATACTGAAGAAAGCAAAGGGATTTATTTATTTAACAGT  346

seq1  TTTAGAGACTGGCAATCCCAAACTGAGTAGCCCCATCTGTTCAGCCTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGACTGGCAATCCCAAACTGAGTAGCCCCATCTGTTCAGCCTTTA  396

seq1  AAAACAACTTTGAGACTATATCACAACACAGCATAAAGCATATGATAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTTTGAGACTATATCACAACACAGCATAAAGCATATGATAGGA  446

seq1  GCATATGCAAGAAGGGGAGAGTAGACACAGCAAGGCAGGAAGCAAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCAAGAAGGGGAGAGTAGACACAGCAAGGCAGGAAGCAAGAGAA  496

seq1  AGTAAGGAGCCCAAATAGATCCTTTCACAGCTTACTATCTGAAGAACTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAGCCCAAATAGATCCTTTCACAGCTTACTATCTGAAGAACTTT  546

seq1  AACAAGGGACCCAAGAGAACGTCATTAATCTCTTTCAAGGACAGCAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGACCCAAGAGAACGTCATTAATCTCTTTCAAGGACAGCAACCC  596

seq1  TAATAACTTAATCTTCACTGGAATCACCTCTTAAAGATTCCCCCACTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTTAATCTTCACTGGAATCACCTCTTAAAGATTCCCCCACTTCT  646

seq1  AACATATGATGGTGGGGTTCACACTCACTACACATACCTCGAATGAGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGATGGTGGGGTTCACACTCACTACACATACCTCGAATGAGGGA  696

seq1  CACATTCAAACCAAACCCAGATGATGTCATTGAACTCTTCATGCTTTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAAACCAAACCCAGATGATGTCATTGAACTCTTCATGCTTTTGG  746

seq1  CTTTCATTCCTTCTCCAAGGGTCCTTTAAAATGTACTCTCCTCCCACATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCCTTCTCCAAGGGTCCTTTAAAATGTACTCTCCTCCCACATT  796

seq1  TTTCCTCTGAAATTACCCTCCCCACATGTCTTCAAATAAAGTGTTCTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGAAATTACCCTCCCCACATGTCTTCAAATAAAGTGTTCTACA  846

seq1  GTCTCGTTGCCTTTGTTATTTCCAAATGTCTGCTAACCTGTTTCACTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGTTGCCTTTGTTATTTCCAAATGTCTGCTAACCTGTTTCACTGGG  896

seq1  ATGAGGCACTTAGAGCCCAGAATTAACTTCTAAAGAACAACTAAACCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCACTTAGAGCCCAGAATTAACTTCTAAAGAACAACTAAACCCTG  946

seq1  ATTCTCTACCTCAATTCTTTCTTCTCTGTCACTTTATCTATTGATGAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTACCTCAATTCTTTCTTCTCTGTCACTTTATCTATTGATGAACT  996

seq1  GAATTC  1005
      ||||||
seq2  GAATTC  1002