BAC Information

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BAC

Clone NameB6Ng01-022H16
Chromosome16 (Build37)
Map Location 43,274,988 - 43,427,224
singlet/doubletdoublet
Overlap geneLOC667484
Upstream geneGap43, BC002163
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H16.bB6Ng01-022H16.g
ACCDH854679DH854680
length7181,077
definitionDH854679|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H16, 5' end.DH854680|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,426,510 - 43,427,224)(43,274,988 - 43,276,072)
sequence
gaattcattgcactggggaattagtgtgttgggctgtctgggatggtgtg
tgcagtgaggacggaggtgggaagaaggatttttcataggaaagcaacta
attcagcttgtagaatgaaaaggaaagagctgcccctgtaaacagtcatc
tcatttctggaccaccagacaggcacacaaaagatacatgtgttctacct
acttgttttcttgcctctggtgtgaggtgcatagtaggtatgtctttgtt
gaagcatatccactaagaataacagcaaagatacaagtactaattctgtg
gggatattgattagttaatactttaaagacagtcaggaattgtctctggg
agttgtacaatacagacaagtgataaagaaaccatagaaggaatcatata
gcaagtatgaattagaactaacaacaaaactggaaacaaaaaacctcaca
catttgacctaaaaattattttttcagagtcttaatggcttcttaagtca
attcgatgatgtgtaggatggggattctttgaaaacagagggacaactgg
accaatgtgctgaacatcacatggaggactcaaaattacactcacagatg
caagtcagcgcccatttctgtaattttggaacaaaggagcccgcctttgt
gatacttcagtttcggaataactactatggtgatttagacgtcccagggt
tttttttagcatgataca
gaattccaagataacaagaaacagaaatcctgtttaaaaaaaaaaaagga
aagcaaagaataataatctttacttctttttgtggcatagctcatctaag
agtttgggatccttttgatggcttatttgggcagtgtttggctttaggca
gccttgagctgttttgtggtaccagtgactagatgtgttgataacatttt
taaggggactatttctcttcctgagccacaaatgaacttaagctatagtt
atagacagcagaagacaagatactacaagagaatattgtgttctctttgg
gaaaaaaaaagtctccatgttgttgtggttgttttccccttggagctggg
attccatctggcactgaaaacatattgaggctacttcctctcactcggga
atgtcttcatccttacttcatgccatagtgtatatctcaaggatcaattt
ctacaagaacctgagtagaataatgaataagtgaggtagacctatgaaag
actacgtgagtgtttcatgttcagtatggaggtccctgtgaaatcctgta
atgaagacactctatcctcactgtattttgacacagtaactgggatatat
acttgtctagggcatatataaaatgtttctgggaaatttatggagaaagc
atgatgagtctctgttttgaagtaggtagtacattttgccatgagatatg
ataggtaactcataagcttcaagttaaaccagagctaggtttttagagtt
tctgtttcagcctgcacttgaaagtcataaagttaaacatcgaaaactca
gatctctcagaagtaccgtctcataattgattgttgggcaaatgtgacct
gattaactcggtaagcacatgagaatgaactgagagcaacaatcttttaa
tagatgagacttcaatggattgtatgtgccaaataaggtgtcagaaaact
gggagagggtcttccagaagataagccacgtgcttcaagaaaggggatgt
tgctaacagtgtgtgattccttgctgaaaacctgagggaaatagaaagcc
atgtgacacaagggttgacagagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43426510_43427224
seq2: B6Ng01-022H16.b_46_763 (reverse)

seq1  TGTATCATGCTAACAAAAACC--TGGACGTCCTAAATCACCATAGTAGTT  48
      ||||||||||||| |||||||   |||||| |||||||||||||||||||
seq2  TGTATCATGCTAAAAAAAACCCTGGGACGT-CTAAATCACCATAGTAGTT  49

seq1  ATTCCGAAACTGAAGTATCACAAAGGCGGGCTCC-TTGTTCC-AAATTAC  96
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  ATTCCGAAACTGAAGTATCACAAAGGCGGGCTCCTTTGTTCCAAAATTAC  99

seq1  AGAAATGGGCGCTGACTTGCATCTGTGAGTGTAATTTTGAGTCCTCCATG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGCGCTGACTTGCATCTGTGAGTGTAATTTTGAGTCCTCCATG  149

seq1  TGATGTTCAGCACATTGGTCCAGTTGTCCCTCTGTTTTCAAAGAATCCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCAGCACATTGGTCCAGTTGTCCCTCTGTTTTCAAAGAATCCCC  199

seq1  ATCCTACACATCATCGAATTGACTTAAGAAGCCATTAAGACTCTGAAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACACATCATCGAATTGACTTAAGAAGCCATTAAGACTCTGAAAAA  249

seq1  ATAATTTTTAGGTCAAATGTGTGAGGTTTTTTGTTTCCAGTTTTGTTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTAGGTCAAATGTGTGAGGTTTTTTGTTTCCAGTTTTGTTGTT  299

seq1  AGTTCTAATTCATACTTGCTATATGATTCCTTCTATGGTTTCTTTATCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAATTCATACTTGCTATATGATTCCTTCTATGGTTTCTTTATCAC  349

seq1  TTGTCTGTATTGTACAACTCCCAGAGACAATTCCTGACTGTCTTTAAAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTATTGTACAACTCCCAGAGACAATTCCTGACTGTCTTTAAAGT  399

seq1  ATTAACTAATCAATATCCCCACAGAATTAGTACTTGTATCTTTGCTGTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAATCAATATCCCCACAGAATTAGTACTTGTATCTTTGCTGTTA  449

seq1  TTCTTAGTGGATATGCTTCAACAAAGACATACCTACTATGCACCTCACAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGGATATGCTTCAACAAAGACATACCTACTATGCACCTCACAC  499

seq1  CAGAGGCAAGAAAACAAGTAGGTAGAACACATGTATCTTTTGTGTGCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGAAAACAAGTAGGTAGAACACATGTATCTTTTGTGTGCCTG  549

seq1  TCTGGTGGTCCAGAAATGAGATGACTGTTTACAGGGGCAGCTCTTTCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGTCCAGAAATGAGATGACTGTTTACAGGGGCAGCTCTTTCCTT  599

seq1  TTCATTCTACAAGCTGAATTAGTTGCTTTCCTATGAAAAATCCTTCTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTACAAGCTGAATTAGTTGCTTTCCTATGAAAAATCCTTCTTCC  649

seq1  CACCTCCGTCCTCACTGCACACACCATCCCAGACAGCCCAACACACTAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCGTCCTCACTGCACACACCATCCCAGACAGCCCAACACACTAAT  699

seq1  TCCCCAGTGCAATGAATTC  715
      |||||||||||||||||||
seq2  TCCCCAGTGCAATGAATTC  718

seq1: chr16_43274988_43276072
seq2: B6Ng01-022H16.g_66_1142

seq1  GAATTCCAAGATAACAAGAAACAGAAATCCTGTTTAAAAAAAAAAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATAACAAGAAACAGAAATCCTGTTTAAAAAAAAAAAAGGA  50

seq1  AAGCAAAGAATAATAATCTTTACTTCTTTTTGTGGCATAGCTCATCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGAATAATAATCTTTACTTCTTTTTGTGGCATAGCTCATCTAAG  100

seq1  AGTTTGGGATCCTTTTGATGGCTTATTTGGGCAGTGTTTGGCTTTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGATCCTTTTGATGGCTTATTTGGGCAGTGTTTGGCTTTAGGCA  150

seq1  GCCTTGAGCTGTTTTGTGGTACCAGTGACTAGATGTGTTGATAACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGCTGTTTTGTGGTACCAGTGACTAGATGTGTTGATAACATTTT  200

seq1  TAAGGGGACTATTTCTCTTCCTGAGCCACAAATGAACTTAAGCTATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGACTATTTCTCTTCCTGAGCCACAAATGAACTTAAGCTATAGTT  250

seq1  ATAGACAGCAGAAGACAAGATACTACAAGAGAATATTGTGTTCTCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGCAGAAGACAAGATACTACAAGAGAATATTGTGTTCTCTTTGG  300

seq1  GAAAAAAAAAGTCTCCATGTTGTTGTGGTTGTTTTCCCCTTGGAGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAGTCTCCATGTTGTTGTGGTTGTTTTCCCCTTGGAGCTGGG  350

seq1  ATTCCATCTGGCACTGAAAACATATTGAGGCTACTTCCTCTCACTCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTGGCACTGAAAACATATTGAGGCTACTTCCTCTCACTCGGGA  400

seq1  ATGTCTTCATCCTTACTTCATGCCATAGTGTATATCTCAAGGATCAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCATCCTTACTTCATGCCATAGTGTATATCTCAAGGATCAATTT  450

seq1  CTACAAGAACCTGAGTAGAATAATGAATAAGTGAGGTAGACCTATGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAACCTGAGTAGAATAATGAATAAGTGAGGTAGACCTATGAAAG  500

seq1  ACTACGTGAGTGTTTCATGTTCAGTATGGAGGTCCCTGTGAAATCCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGTGAGTGTTTCATGTTCAGTATGGAGGTCCCTGTGAAATCCTGTA  550

seq1  ATGAAGACACTCTATCCTCACTGTATTTTGACACAGTAACTGGGATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACACTCTATCCTCACTGTATTTTGACACAGTAACTGGGATATAT  600

seq1  ACTTGTCTAGGGCATATATAAAATGTTTCTGGGAAATTTATGGAGAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTAGGGCATATATAAAATGTTTCTGGGAAATTTATGGAGAAAGC  650

seq1  ATGATGAGTCTCTGTTTTGAAGTAGGTAGTACATTTTGCCATGAGATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTCTCTGTTTTGAAGTAGGTAGTACATTTTGCCATGAGATATG  700

seq1  ATAGGTAACTCATAAGCTTCAAGTTAAACCAGAGCTAGGTTTTTAGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAACTCATAAGCTTCAAGTTAAACCAGAGCTAGGTTTTTAGAGTT  750

seq1  TCTGTTTCAGCCTGCACTTGAAAGTCATAAAGTTAAACATCGAAAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAGCCTGCACTTGAAAGTCATAAAGTTAAACATCGAAAACTCA  800

seq1  GATCTCTCAGAAGTACCGTCTCATAATTGATTGTTTGGCCAAATGTGACC  850
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  GATCTCTCAGAAGTACCGTCTCATAATTGATTG-TTGGGCAAATGTGACC  849

seq1  TGATTAACTCGGTAAGCAACATGAGAATGAACTGAGAGCAACAATCTTTA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TGATTAACTCGGTAAGC-ACATGAGAATGAACTGAGAGCAACAATCTTTT  898

seq1  AATAAGATGAGACTTCAATGGATTGTATGTGCCAAATAAGGTGTCAGAAA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAT-AGATGAGACTTCAATGGATTGTATGTGCCAAATAAGGTGTCAG-AA  946

seq1  AACTGGGAAGAGGGTCTCCCAGAAGAT-AGCCACAGTGCTTCAAGAAAGG  999
      ||||||| ||||||||| ||||||||| |||||| |||||||||||||||
seq2  AACTGGG-AGAGGGTCTTCCAGAAGATAAGCCAC-GTGCTTCAAGAAAGG  994

seq1  GGATGTTGCTAACAGTGTG-ATTTCTTTGCTGAAAAGCTGAGGGAGATGA  1048
      |||||||||||||||||||   ||| |||||||||| |||||||| || |
seq2  GGATGTTGCTAACAGTGTGTGATTCCTTGCTGAAAACCTGAGGGAAAT-A  1043

seq1  GAAGAGCCATGTGACCAGAGGGTTTGACAGGAGTGAG  1085
      ||| |||||||||| || | || |||||| |||||||
seq2  GAA-AGCCATGTGA-CACAAGGGTTGACA-GAGTGAG  1077