BAC Information

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BAC

Clone NameB6Ng01-022K06
Chromosome4 (Build37)16 (Build37)
Map Location 81,583,061 - 81,584,20060,775,875 - 60,776,421
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022K06.bB6Ng01-022K06.g
ACCDH854792DH854793
length1,131937
definitionDH854792|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K06, 5' end.DH854793|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,583,061 - 81,584,200)(60,775,875 - 60,776,421)
sequence
gaattcttgtattcagcatgacaaccagcctaatgagaatgattttcaag
tcccttcttaccttcattctttgaattgagccagcatccatattgtattt
tcaaaggaatggcacttactgcttgacactactgctggactctaaaataa
gagccaaccagaatttaggactgagtgagcaaagggctctgcaaagctcc
aactggtttgtgtagcaaagagcaggcaggcaggactccttctccttcac
ctcacacaagggaaggattgatccttctcttcctcttcatcccccacatc
ctaaacagatttcctgaaagaccttctggttacgttctcatccccttggc
aaggcaacttgtacgctgagccagtcagctgtctcattgagattcactgc
caggtggacagctttgatggcaaggaggtggcgttccgcccagttaagca
gctttcaagcctcaagccataaagatgagctcctggcccttcttcctcca
ggaggatgctgcagacatattgcctgcccttggaagtacggctttcctgt
ggtgcaaattattgagctgtgcagaacaccttacttattgctctctcctc
agagcactggagacacagaccttgtccagtttcttgtgtcagcttttctt
tgctagtgctgttcaagtaattagctagagttggaagcaagaattaagtt
ggaggaatttaatctcagttgatgctgctctttatatccaccaggaaaaa
aaaaagagtgctataaaacatgaaggaagtgaaggagctcatgtttctga
gtatttcttttataatgggccttgcattttcaaccaaacacaccaacagc
tgtcctgtggtgaggaaacatgttatgtgctcttgcccattttatagaca
ggaatactaagaacaacaaaaagatttaaagaagacatttaaaaaccaac
aggattttacatttttttaaaccacattttgtatatatgctaatttaatg
ggaaataagttaaaaggaagtagatagtccattaatttagaattagaaag
aagccacctggaggagtcctgagtgcttgctcaatgtgcaaggaccgaaa
ggggagatttttcccagaacctgtttggaag
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgcccttttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaacaaactcctcgtttggttaattctttg
aatagtcttctgtttccacttgggttgatttcacccctggagtttgatta
ttcctggcctctactcctctgggtgaattgcttccttttttcctagggct
tttagatgtgtgcagcttgctagtatgtgctgtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81583061_81584200
seq2: B6Ng01-022K06.b_40_1170

seq1  GAATTCTTGTATTCAGCATGACAACCAGCCTAATGAGAATGATTTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTATTCAGCATGACAACCAGCCTAATGAGAATGATTTTCAAG  50

seq1  TCCCTTCTTACCTTCATTCTTTGAATTGAGCCAGCATCCATATTGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTACCTTCATTCTTTGAATTGAGCCAGCATCCATATTGTATTT  100

seq1  TCAAAGGAATGGCACTTACTGCTTGACACTACTGCTGGACTCTAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAATGGCACTTACTGCTTGACACTACTGCTGGACTCTAAAATAA  150

seq1  GAGCCAACCAGAATTTAGGACTGAGTGAGCAAAGGGCTCTGCAAAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACCAGAATTTAGGACTGAGTGAGCAAAGGGCTCTGCAAAGCTCC  200

seq1  AACTGGTTTGTGTAGCAAAGAGCAGGCAGGCAGGACTCCTTCTCCTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTGTGTAGCAAAGAGCAGGCAGGCAGGACTCCTTCTCCTTCAC  250

seq1  CTCACACAAGGGAAGGATTGATCCTTCTCTTCCTCTTCATCCCCCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAAGGGAAGGATTGATCCTTCTCTTCCTCTTCATCCCCCACATC  300

seq1  CTAAACAGATTTCCTGAAAGACCTTCTGGTTACGTTCTCATCCCCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGATTTCCTGAAAGACCTTCTGGTTACGTTCTCATCCCCTTGGC  350

seq1  AAGGCAACTTGTACGCTGAGCCAGTCAGCTGTCTCATTGAGATTCACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTTGTACGCTGAGCCAGTCAGCTGTCTCATTGAGATTCACTGC  400

seq1  CAGGTGGACAGCTTTGATGGCAAGGAGGTGGCGTTCCGCCCAGTTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGACAGCTTTGATGGCAAGGAGGTGGCGTTCCGCCCAGTTAAGCA  450

seq1  GCTTTCAAGCCTCAAGCCATAAAGATGAGCTCCTGGCCCTTCTTCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGCCTCAAGCCATAAAGATGAGCTCCTGGCCCTTCTTCCTCCA  500

seq1  GGAGGATGCTGCAGACATATTGCCTGCCCTTGGAAGTACGGCTTTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGCTGCAGACATATTGCCTGCCCTTGGAAGTACGGCTTTCCTGT  550

seq1  GGTGCAAATTATTGAGCTGTGCAGAACACCTTACTTATTGCTCTCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAATTATTGAGCTGTGCAGAACACCTTACTTATTGCTCTCTCCTC  600

seq1  AGAGCACTGGAGACACAGACCTTGTCCAGTTTCTTGTGTCAGCTTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGGAGACACAGACCTTGTCCAGTTTCTTGTGTCAGCTTTTCTT  650

seq1  TGCTAGTGCTGTTCAAGTAATTAGCTAGAGTTGGAAGCAAGAATTAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGCTGTTCAAGTAATTAGCTAGAGTTGGAAGCAAGAATTAAGTT  700

seq1  GGAGGAATTTAATCTCAGTTGATGCTGCTCTTTATATCCACCAGGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATTTAATCTCAGTTGATGCTGCTCTTTATATCCACCAGGAAAAA  750

seq1  AAAAAGAGTGCTATAAAACATGAAGGAAGTGAAGGAGCTCATGTTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGTGCTATAAAACATGAAGGAAGTGAAGGAGCTCATGTTTCTGA  800

seq1  GTATTTCTTTTATAATGGGCCTTGCATTTTCAACCAAACACACCAACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTTTATAATGGGCCTTGCATTTTCAACCAAACACACCAACAGC  850

seq1  TGTCCTGTGGTGAGGAAACATGTTATGTGCTCTTGCCCATTTTATAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGGTGAGGAAACATGTTATGTGCTCTTGCCCATTTTATAGACA  900

seq1  GGAATACTAAGAACAACAAAAAAGATTTAAAGAAGACATTTAAAAACCAA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAATACTAAGAACAAC-AAAAAGATTTAAAGAAGACATTTAAAAACCAA  949

seq1  CAGAATTTTACATTTTTTTAAACCACATATGTAATATATGCTAATTTTAA  1000
      ||| |||||||||||||||||||||||| |   ||||||||||||||  |
seq2  CAGGATTTTACATTTTTTTAAACCACATTTTGTATATATGCTAATTT--A  997

seq1  ATGGAAAAT-AGTTAAAAAGAAGTAAGATAGTCCATTAAATTAAGAATTA  1049
      |||| |||| |||||||| ||||| |||||||||||| |||| |||||||
seq2  ATGGGAAATAAGTTAAAAGGAAGT-AGATAGTCCATT-AATTTAGAATTA  1045

seq1  GAAAGAAGCACACTGGAGGAGTCCTGAGTTGCTGGCTC-ATGTGCAAGGA  1098
      |||||||||   |||||||||||||||| |||| |||| |||||||||| 
seq2  GAAAGAAGCCACCTGGAGGAGTCCTGAG-TGCTTGCTCAATGTGCAAGG-  1093

seq1  ACAGAAAGGTGAGAATTTTCCCCCAGAAACCTTGTTTGGAAG  1140
      || |||||| |||| ||||  |||||||  | ||||||||||
seq2  ACCGAAAGGGGAGATTTTT--CCCAGAA--CCTGTTTGGAAG  1131

seq1: chr16_60775875_60776421
seq2: B6Ng01-022K06.g_460_1002 (reverse)

seq1  GGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAA  50
      ||||||||||||||||||||   ||   ||||||||||||||||||| ||
seq2  GGAGACAGCACATACTAGCAAGCTG--CACACATCTAAAAGCCCTAGGAA  48

seq1  AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA  100
      |||||||||| ||||||||| ||||||||||| | |||| ||||||||||
seq2  AAAAGGAAGC-AATTCACCC-AGAGGAGTAGAGGCCAGG-AATAATCAAA  95

seq1  CT-CAGGGGTGAAATCAA-CCAAGTGGAAACAAGAAGAACTATTCAAAGA  148
      || ||||||||||||||| |||||||||||| ||||| ||||||||||||
seq2  CTCCAGGGGTGAAATCAACCCAAGTGGAAAC-AGAAG-ACTATTCAAAGA  143

seq1  ATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAA  198
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTAACCAAACGAGGAGTTTGTTCTTTGAGAAAATCAACAAGATAGATAA  193

seq1  ACCCTTAGCTAGACTCACT-AAAGGGCACAGGGACAAAATCCTAATTAAC  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCCTTAGCTAGACTCACTAAAAGGGCACAGGGACAAAATCCTAATTAAC  243

seq1  AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCA  293

seq1  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  343

seq1  ACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTG  393

seq1  AATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAAT  443

seq1  AGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATG  493

seq1  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATT  543