BAC Information

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BAC

Clone NameB6Ng01-023G03
Chromosome16 (Build37)
Map Location 96,622,863 - 96,746,800
singlet/doubletdoublet
Overlap geneJam4, Itgb2l, Pcp4
Upstream geneErg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5
Downstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G03.bB6Ng01-023G03.g
ACCDH855318DH855319
length7331,112
definitionDH855318|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G03, 5' end.DH855319|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,746,069 - 96,746,800)(96,622,863 - 96,623,968)
sequence
gaattccatagctctagagaacattctacaattctctagctatctgaacg
ttaccatgagcaggatggatgacacagtcttgacacattcccataatgct
agctgatggtcactgtgctcagagcagacagaaagttactttggatacct
gcattgtgttgttaatgagagctgctcatccttttccaggctttcatggt
ggttatttttataaccaaaccacactatttgaccatcaccagaagaccac
acttccacaagtgatacattgtaatattgaaaagcaagaggggtggtgtg
tctacttaggcagagaggccagccagctcacactaacgtggttgctgaag
atcggttacaagccagcaccaagcgaagatttaaagtaatcatgcctttg
tgctaggcgcttctgagcagtggcctaaaaataagtaagcaaagtcctcc
agtcagagaagagacatctttttacatcctccaacccagtaaacactgat
cactggagtcaaaagaagaaacatttatctcttttgaatgcagacacaga
tgccccagtccaaactcagggtgacttcttgggtagtcaaatggaaggtg
cccataagggaaaacctgctcatttgttaagcccaggaagaggctaggtt
tgctaccctgcactagcatgtggaacagaaaggccaactagaaaaaacag
agagtgggaaggggaggaggtgatagaaataat
gaattcctaaaaaaatgctgactgaatatgaggtatgcatggctcctata
gaaacccgtgcctggtagcctgataaatcagtgcagcatatccaagaatc
acttggggtgcttgtgcaagcccatagggctcttccagagtgcctagaca
agagcaggcctaagagcttgtattttcacatgttcctcaggtgacctgct
tggcgaaaatgcccttttagacacaggcagcatatttttaaggcagtgtc
ctctctgagttctaggaggctgcctaagctgtgccttgtgtgtccacagt
ggtgagctgctcgtgcttctgggtgcagtgatcagcaccaagcacaaggt
ctcgagggttaatacccccccccccatctgcagcagaattttttttttca
gtcttcagtgttttagatgtatcccaagacataacacattcaatatggtt
agaagcacaagattttaggttgtagaacccagctcaggcattaaatgtct
agaaaagttggaagaaaaaaaaaaaagagattaccaaaatggagacttgc
caagcatgatgcctcttcagtgctggctcctgtcacaacagggtgtgcgg
tatgtgcgtatgtgcggttagcgtatgtgcggtatgtgcgtatgtgcggt
tagcgtatggaacatggccattgattactaagtaagagcctgtagtggta
gacggagctcaggtgtaccatgattgacacatcttagtacagaactcaca
aggctttaaacttttgctacaaatcacaatcagctcatgggacaagcgaa
ccttttctattttggtctaaaaccatgggccttctacctagataagtatg
caacagaaatggctgtctgtcctcctctttctggggtcttcatttgcagt
cagtcacttttcaggggtttttagcaattcagtctctttaccattccgtt
tcgaggggaatatgaaatgtttcataacccagccttgtgcctttccccac
taatccattccccttggtgagaataaacggaaataaacctgtgataatta
agaaaggcggcagtgtcatttgtgcactcctagcagcgtaaacagaggca
acaaactgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_96746069_96746800
seq2: B6Ng01-023G03.b_43_775 (reverse)

seq1  ATTATTTCTATCACCTCCTCCCCTTCCCACTCTCTGTTTTTTCTAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTATCACCTCCTCCCCTTCCCACTCTCTGTTTTTTCTAGTTGG  50

seq1  CCTTTCTGTTCCACATGCTAGTGCAGGGTAGC-AACCTAGCCTCTTCCTG  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTTCTGTTCCACATGCTAGTGCAGGGTAGCAAACCTAGCCTCTTCCTG  100

seq1  GGCTTAACAAATGAGCAGGTTTTCCCTTATGGGCACCTTCCATTTGACTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACAAATGAGCAGGTTTTCCCTTATGGGCACCTTCCATTTGACTA  150

seq1  CCCAAGAAGTCACCCTGAGTTTGGACTGGGGCATCTGTGTCTGCATTCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAGTCACCCTGAGTTTGGACTGGGGCATCTGTGTCTGCATTCAA  200

seq1  AAGAGATAAATGTTTCTTCTTTTGACTCCAGTGATCAGTGTTTACTGGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAATGTTTCTTCTTTTGACTCCAGTGATCAGTGTTTACTGGGT  250

seq1  TGGAGGATGTAAAAAGATGTCTCTTCTCTGACTGGAGGACTTTGCTTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATGTAAAAAGATGTCTCTTCTCTGACTGGAGGACTTTGCTTACT  300

seq1  TATTTTTAGGCCACTGCTCAGAAGCGCCTAGCACAAAGGCATGATTACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGGCCACTGCTCAGAAGCGCCTAGCACAAAGGCATGATTACTT  350

seq1  TAAATCTTCGCTTGGTGCTGGCTTGTAACCGATCTTCAGCAACCACGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTCGCTTGGTGCTGGCTTGTAACCGATCTTCAGCAACCACGTTA  400

seq1  GTGTGAGCTGGCTGGCCTCTCTGCCTAAGTAGACACACCACCCCTCTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTGGCTGGCCTCTCTGCCTAAGTAGACACACCACCCCTCTTGC  450

seq1  TTTTCAATATTACAATGTATCACTTGTGGAAGTGTGGTCTTCTGGTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATATTACAATGTATCACTTGTGGAAGTGTGGTCTTCTGGTGATG  500

seq1  GTCAAATAGTGTGGTTTGGTTATAAAAATAACCACCATGAAAGCCTGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAGTGTGGTTTGGTTATAAAAATAACCACCATGAAAGCCTGGAA  550

seq1  AAGGATGAGCAGCTCTCATTAACAACACAATGCAGGTATCCAAAGTAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAGCAGCTCTCATTAACAACACAATGCAGGTATCCAAAGTAACT  600

seq1  TTCTGTCTGCTCTGAGCACAGTGACCATCAGCTAGCATTATGGGAATGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGCTCTGAGCACAGTGACCATCAGCTAGCATTATGGGAATGTG  650

seq1  TCAAGACTGTGTCATCCATCCTGCTCATGGTAACGTTCAGATAGCTAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTGTGTCATCCATCCTGCTCATGGTAACGTTCAGATAGCTAGAG  700

seq1  AATTGTAGAATGTTCTCTAGAGCTATGGAATTC  732
      |||||||||||||||||||||||||||||||||
seq2  AATTGTAGAATGTTCTCTAGAGCTATGGAATTC  733

seq1: chr16_96622863_96623968
seq2: B6Ng01-023G03.g_66_1177

seq1  GAATTCCTAAAAAAATGCTGACTGAATATGAGGTATGCATGGCTCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAAAAATGCTGACTGAATATGAGGTATGCATGGCTCCTATA  50

seq1  GAAACCCGTGCCTGGTAGCCTGATAAATCAGTGCAGCATATCCAAGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCGTGCCTGGTAGCCTGATAAATCAGTGCAGCATATCCAAGAATC  100

seq1  ACTTGGGGTGCTTGTGCAAGCCCATAGGGCTCTTCCAGAGTGCCTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGTGCTTGTGCAAGCCCATAGGGCTCTTCCAGAGTGCCTAGACA  150

seq1  AGAGCAGGCCTAAGAGCTTGTATTTTCACATGTTCCTCAGGTGACCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCCTAAGAGCTTGTATTTTCACATGTTCCTCAGGTGACCTGCT  200

seq1  TGGCGAAAATGCCCTTTTAGACACAGGCAGCATATTTTTAAGGCAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAAAATGCCCTTTTAGACACAGGCAGCATATTTTTAAGGCAGTGTC  250

seq1  CTCTCTGAGTTCTAGGAGGCTGCCTAAGCTGTGCCTTGTGTGTCCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGTTCTAGGAGGCTGCCTAAGCTGTGCCTTGTGTGTCCACAGT  300

seq1  GGTGAGCTGCTCGTGCTTCTGGGTGCAGTGATCAGCACCAAGCACAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTGCTCGTGCTTCTGGGTGCAGTGATCAGCACCAAGCACAAGGT  350

seq1  CTCGAGGGTTAATACCCCCCCCCCCATCTGCAGCAGAATTTTTTTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGTTAATACCCCCCCCCCCATCTGCAGCAGAATTTTTTTTTTCA  400

seq1  GTCTTCAGTGTTTTAGATGTATCCCAAGACATAACACATTCAATATGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGTGTTTTAGATGTATCCCAAGACATAACACATTCAATATGGTT  450

seq1  AGAAGCACAAGATTTTAGGTTGTAGAACCCAGCTCAGGCATTAAATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACAAGATTTTAGGTTGTAGAACCCAGCTCAGGCATTAAATGTCT  500

seq1  AGAAAAGTTGGAAGAAAAAAAAAAAAGAGATTACCAAAATGGAGACTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTGGAAGAAAAAAAAAAAAGAGATTACCAAAATGGAGACTTGC  550

seq1  CAAGCATGATGCCTCTTCAGTGCTGGCTCCTGTCACAACAGGGTGTGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGATGCCTCTTCAGTGCTGGCTCCTGTCACAACAGGGTGTGCGG  600

seq1  TATGTGCGTATGTGCGGTTAGCGTATGTGCGGTATGTGCGTATGTGCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCGTATGTGCGGTTAGCGTATGTGCGGTATGTGCGTATGTGCGGT  650

seq1  TAGCGTATGGAACATGGCCATTGATTACTAAGTAAGAGCCTGTAGTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTATGGAACATGGCCATTGATTACTAAGTAAGAGCCTGTAGTGGTA  700

seq1  GACGGAGCTCAGGTGTACCATGATTGACACATCTTAGTACAGAACTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGCTCAGGTGTACCATGATTGACACATCTTAGTACAGAACTCACA  750

seq1  AGGCTTTAAACTTTTGCTACAAATCACAATCAGCTCATGGGACAAGCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTAAACTTTTGCTACAAATCACAATCAGCTCATGGGACAAGCGAA  800

seq1  CCTTTTCTATTTTGGTCTAAAACCAT-GGCCTTCTACCTAGATAAGTATG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTTTCTATTTTGGTCTAAAACCATGGGCCTTCTACCTAGATAAGTATG  850

seq1  CAACAGAAATGGCTGTCTGTCCTCCTC-TTCTGGGGCCTTCATTTGCAGT  898
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  CAACAGAAATGGCTGTCTGTCCTCCTCTTTCTGGGGTCTTCATTTGCAGT  900

seq1  CAGTCAACTTTTCCGGTGGTTTTTAGCAATTCAGTCTCTTTACCATTCCG  948
      ||||| ||||||| || |||||||||||||||||||||||||||||||||
seq2  CAGTC-ACTTTTCAGG-GGTTTTTAGCAATTCAGTCTCTTTACCATTCCG  948

seq1  TTTTCGA-GGGCATATG-AATGTTTCATAACCCAG-CTTGTGCC-TTCCC  994
       |||||| ||| ||||| ||||||||||||||||| |||||||| |||||
seq2  -TTTCGAGGGGAATATGAAATGTTTCATAACCCAGCCTTGTGCCTTTCCC  997

seq1  CACTAATCCATTCCCCCTGTTGAG-ATAAACAGAAATAAACCTGTGATAA  1043
      |||||||||||||||| || |||| |||||| |||||||||||||||| |
seq2  CACTAATCCATTCCCCTTGGTGAGAATAAACGGAAATAAACCTGTGAT-A  1046

seq1  ATTTAGAAA-GCGGCAGTG-CATTTGTGCAC-CCCAGCAGCATAAACAGA  1090
      ||| ||||| ||||||||| ||||||||||| || |||||| ||||||||
seq2  ATTAAGAAAGGCGGCAGTGTCATTTGTGCACTCCTAGCAGCGTAAACAGA  1096

seq1  GGCAAACAACTGCAAA  1106
      |||||  |||||||||
seq2  GGCAACAAACTGCAAA  1112