BAC Information

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BAC

Clone NameB6Ng01-024F11
Chromosome16 (Build37)
Map Location 54,924,331 - 55,103,170
singlet/doubletdoublet
Overlap geneLOC667927, LOC436421
Upstream geneLOC433027, LOC100043442, LOC100043449
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024F11.bB6Ng01-024F11.g
ACCDH856004DH856005
length7241,102
definitionDH856004|Mus musculus domesticus DNA, BAC clone: B6Ng01-024F11, 5' end.DH856005|Mus musculus domesticus DNA, BAC clone: B6Ng01-024F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,102,444 - 55,103,170)(54,924,331 - 54,925,438)
sequence
gaattcagaaccacttataggagagactgttattcttcgtgatggctttc
ctcttctttatttttcttattttctcagtgtaaaataagttaggaatgaa
gtagacaggagtaatgctagtagcgcccaggagagaaatgtgaacagctt
gttgttttcctttgcaaccagaaaccttgaagaggatgtcaactgaccca
ggcacttctgaaaggacctcagctacttttcaccaaagagtgtgtgggac
ctcctttgtctatactggttactttcttcatgatccacacattctgttct
tcaccaagttggaactcctttgaatagctgactttcatgataatagagga
agtggttttctaggaaccctattagagacatatgggattaaagacacatt
ttaaggtggccaagggggaaatcaaagtgtttcatgtgcctcgttaaaac
aaaataacacaattacaaagaatgaacctttataatcagttgtctgaggc
ctcaccccaggaagttttatttccctacagattaagcatgcctttttttt
attttcttagaaagaaatctgcttgtaaaagtattttatgtatagtttaa
gtgtgacttgtgtagtgtctcatggaaagagtgtgcagtctttggtgagt
attctctgaatttccctcctgttcctcgccaggacatctgaatttattgc
cccaggtatcaaatcatgtattat
gaattcaccatttagcccagatattctaaaaattgctatcctcaatgaaa
tataacgacacatgcgtttagtctttgtacttgagagttggaagcaggaa
aatcaggagtaacaaaatatggcatacataatggggttcacagtagctat
gtgagatcttatatcaacaaaacaaaataagggctatggatatgcctctg
tgggtaaagttcccattgtacaggcaggaagacctgaaaatgctgggtgt
gggagcagtatatgcctccaaaaactccagttcttgccaaggatacagat
aagcagatctcagtttcactgactaaccagtgtagtcaaagtcgtaagct
tcaagttctgtgagagactgtttcagaaatatgatggatgggccagaaag
atagcgcaaggagataagagcacatgccactagccctgatcacctgactc
caattcctgaaatatacataaagagagaaaagaactaattcatgtaatat
gtcctctggcctctgcatctacacacacacacgcacacacacacacacac
acacacacacagggtttaggagacagagacagatagagaccatacagata
tggagactgagacaagagagttagtttctgtctagtgggtctccataagc
aattaaatgcatgcatatcgctgtccatatacccttcctgcaggctagcc
tcccccatctcctccatacttctttcacttgcttgtttagatttacacca
agatattttattgtaaagggtgttaattccctaatttctttctcagccag
tttatcatttgcataaagaaagggctactggtttctttgagctaattttg
tattcagataatttgctggagctgtttgtcagctgtaggagttctctggt
agagttttgggggtcactttatgtatactgtcacatcatctgcgaatgtg
tatactttgacttcctttttcttatatgaattccattgatcctcctttag
ttgtcttactgctcttgccagagctccaatctatattgatagatagagag
agtggacagccttgtcttggcccgatttattggaatacatttcccccatt
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55102444_55103170
seq2: B6Ng01-024F11.b_34_757 (reverse)

seq1  ATAATACATGTATTTGAATACCTGGGGCACTAAAATTCAGATGTCCTGGC  50
      |||||||||| ||||| |||||||||||| | ||||||||||||||||||
seq2  ATAATACATG-ATTTG-ATACCTGGGGCAAT-AAATTCAGATGTCCTGGC  47

seq1  GAGGAACAGGAGGGAAATTCAGAGAATACTCACCAAAGACTGCACACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAGGAGGGAAATTCAGAGAATACTCACCAAAGACTGCACACTCT  97

seq1  TTCCCTGAGACACTACACAAGTCACACTTAAACTATACATAAAATACTTT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAGACACTACACAAGTCACACTTAAACTATACATAAAATACTTT  147

seq1  TACAAGCAGATTTCTTTCTAAGAAAATAAAAAAAAGGCATGCTTAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAGATTTCTTTCTAAGAAAATAAAAAAAAGGCATGCTTAATCTG  197

seq1  TAGGGAAATAAAACTTCCTGGGGTGAGGCCTCAGACAACTGATTTTAAAG  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGGAAATAAAACTTCCTGGGGTGAGGCCTCAGACAACTGATTATAAAG  247

seq1  GTTCATTCTTTGTAATTGTGTTATTTTGTTTTAACGAGGCACATGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTTTGTAATTGTGTTATTTTGTTTTAACGAGGCACATGAAACA  297

seq1  CTTTGATTTCCCCCTTGGCCACCTTAAAATGTGTCTTTAATCCCATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTCCCCCTTGGCCACCTTAAAATGTGTCTTTAATCCCATATGT  347

seq1  CTCTAATAGGGTTCCTAGAAAACCACTTCCTCTATTCTCATGAAAGTCAG  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCTAATAGGGTTCCTAGAAAACCACTTCCTCTATTATCATGAAAGTCAG  397

seq1  CTATTCAAAGGAGTTCCAACTTGGTGAAGAACAGAATGTGTGGATCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAAGGAGTTCCAACTTGGTGAAGAACAGAATGTGTGGATCATGA  447

seq1  AGAAAGTAACCAGTATAGACAAAGGAGGTCCCACACACTCTTTGGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAACCAGTATAGACAAAGGAGGTCCCACACACTCTTTGGTGAAA  497

seq1  AGTAGCTGAGGTCCTTTCAGAAGTGCCTGGGTCAGTTGACATCCTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGAGGTCCTTTCAGAAGTGCCTGGGTCAGTTGACATCCTCTTCA  547

seq1  AGGTTTCTGGTTGCAAAGGAAAACAACAAGCTGTTCACATTTCTCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGGTTGCAAAGGAAAACAACAAGCTGTTCACATTTCTCTCCTG  597

seq1  GGCGCTACTAGCATTACTCCTGTCTACTTCATTCCTAACTTATTTTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTACTAGCATTACTCCTGTCTACTTCATTCCTAACTTATTTTACAC  647

seq1  TGAGAAAATAAGAAAAATAAAGAAGAGGAAAGCCATCACGAAGACTAACA  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAGAAAATAAGAAAAATAAAGAAGAGGAAAGCCATCACGAAGAATAACA  697

seq1  GTCTCTCCTATAAGTGGTTCTGAATTC  727
      |||||||||||||||||||||||||||
seq2  GTCTCTCCTATAAGTGGTTCTGAATTC  724

seq1: chr16_54924331_54925438
seq2: B6Ng01-024F11.g_69_1170

seq1  GAATTCACCATTTAGCCCAGATATTCTAAAAATTGCTATCCTCAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTAGCCCAGATATTCTAAAAATTGCTATCCTCAATGAAA  50

seq1  TATAACGACACATGCGTTTAGTCTTTGTACTTGAGAGTTGGAAGCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACGACACATGCGTTTAGTCTTTGTACTTGAGAGTTGGAAGCAGGAA  100

seq1  AATCAGGAGTAACAAAATATGGCATACATAATGGGGTTCACAGTAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAGTAACAAAATATGGCATACATAATGGGGTTCACAGTAGCTAT  150

seq1  GTGAGATCTTATATCAACAAAACAAAATAAGGGCTATGGATATGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCTTATATCAACAAAACAAAATAAGGGCTATGGATATGCCTCTG  200

seq1  TGGGTAAAGTTCCCATTGTACAGGCAGGAAGACCTGAAAATGCTGGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGTTCCCATTGTACAGGCAGGAAGACCTGAAAATGCTGGGTGT  250

seq1  GGGAGCAGTATATGCCTCCAAAAACTCCAGTTCTTGCCAAGGATACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGTATATGCCTCCAAAAACTCCAGTTCTTGCCAAGGATACAGAT  300

seq1  AAGCAGATCTCAGTTTCACTGACTAACCAGTGTAGTCAAAGTCGTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATCTCAGTTTCACTGACTAACCAGTGTAGTCAAAGTCGTAAGCT  350

seq1  TCAAGTTCTGTGAGAGACTGTTTCAGAAATATGATGGATGGGCCAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTGTGAGAGACTGTTTCAGAAATATGATGGATGGGCCAGAAAG  400

seq1  ATAGCGCAAGGAGATAAGAGCACATGCCACTAGCCCTGATCACCTGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGCAAGGAGATAAGAGCACATGCCACTAGCCCTGATCACCTGACTC  450

seq1  CAATTCCTGAAATATACATAAAGAGAGAAAAGAACTAATTCATGTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTGAAATATACATAAAGAGAGAAAAGAACTAATTCATGTAATAT  500

seq1  GTCCTCTGGCCTCTGCATCTACACACACACACGCACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGCCTCTGCATCTACACACACACACGCACACACACACACACAC  550

seq1  ACACACACACAGGGTTTAGGAGACAGAGACAGATAGAGACCATACAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGGTTTAGGAGACAGAGACAGATAGAGACCATACAGATA  600

seq1  TGGAGACTGAGACAAGAGAGTTAGTTTCTGTCTAGTGGGTCTCCATAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGAGACAAGAGAGTTAGTTTCTGTCTAGTGGGTCTCCATAAGC  650

seq1  AATTAAATGCATGCATATCGCTGTCCATATACCCTTCCTGCAGGCTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGCATGCATATCGCTGTCCATATACCCTTCCTGCAGGCTAGCC  700

seq1  TCCCCCATCTCCTCCATACTTCTTTCACTTGCTTGTTTAGATTTACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATCTCCTCCATACTTCTTTCACTTGCTTGTTTAGATTTACACCA  750

seq1  AGATATTTTATTGTAAAGGGTGTTAATTCCCTAATTTCTTTCTCAGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTATTGTAAAGGGTGTTAATTCCCTAATTTCTTTCTCAGCCAG  800

seq1  TTTATCATTTGCATAAAG-AAGGGCTACTGGTTTCTTTGAGCTAATTTTG  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATCATTTGCATAAAGAAAGGGCTACTGGTTTCTTTGAGCTAATTTTG  850

seq1  TATTCAGATAATTTGCTGGAGCTGTTTGTCAGCTGTAGGAGTTCTCTGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGATAATTTGCTGGAGCTGTTTGTCAGCTGTAGGAGTTCTCTGGT  900

seq1  AGAGTTTTGGGGGTCAC-TTATGTATACTGTCACATCATCTGCGAATGTG  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGGGGGTCACTTTATGTATACTGTCACATCATCTGCGAATGTG  950

seq1  TATACTTTGACTTCCTTTTTCTTATATGAATTCCATTGAT-CTCCTTTAG  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATACTTTGACTTCCTTTTTCTTATATGAATTCCATTGATCCTCCTTTAG  1000

seq1  TTGTCTTACTGCTCTGGCCAGAGCTTCAAATACTATATTGATTAGATAGG  1047
      ||||||||||||||| ||||||||| |||   ||||||||| ||||||| 
seq2  TTGTCTTACTGCTCTTGCCAGAGCTCCAA--TCTATATTGA-TAGATAG-  1046

seq1  AAGAGAGTGGACAGCCTTGTCTTGTCCCAGATTTTATTGGATTTACATTT  1097
       ||||||||||||||||||||||| ||| || |||||||||  |||||||
seq2  -AGAGAGTGGACAGCCTTGTCTTGGCCC-GA-TTTATTGGA-ATACATTT  1092

seq1  CTCTCCATTTA  1108
      | | |||||||
seq2  C-CCCCATTTA  1102