BAC Information

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BAC

Clone NameB6Ng01-025M18
Chromosome16 (Build37)9 (Build37)
Map Location 60,307,401 - 60,308,67012,030,247 - 12,030,442
singlet/doubletsingletsinglet
Overlap geneEpha6
Upstream geneOlfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170, LOC100043524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025M18.bB6Ng01-025M18.g
ACCDH857027DH857028
length1,2291,031
definitionDH857027|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M18, 5' end.DH857028|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,307,401 - 60,308,670)(12,030,247 - 12,030,442)
sequence
gaattcccactaacaatcctttcctgccactccctgtggtgtgttacacc
atggtagtttttacctagcatgcaatttacctagcattgcactgcatgat
ataggaagtgccagctagaattataaaggtttctgaaacaagaaaaggta
tcctgctatgttttgaatgaagctaaatttagtgaaagaaacataggtct
tgtatgcacagtaactgctctggtactcagaaaagtatcacagagtttta
tttgaaaacctaagactctgagctttaaaataaaatgtttaatatgtaca
acacataattttccttaaaaatgacccactgacaagtatagtgagagtcg
tatggtgacataacttaaaagaacttgggtcaataaaacaaagaataaaa
atatgaaggacaataaagacaatttttattaataacaaatcttgtaatat
atgctatatttgctctaaagagcaggtcttcctagtgtgctaaatggaag
acagttctcatggatgatgttgaaaggaaattacatctgaataagattgc
atatgtttcacaggatataacatgcagcggttaggggcttggctagaact
cagttgagcaatacttgagtcatgaactaacttctccctgtgctatctgt
tcagtaagaaagtcctggttgcagaatttaactttgcttaatggaattgt
taaaaatcttgatgtggacaactggaagaaagagccttttgtgtctataa
agaaatatttacatatgctgacctcaaattcagtgttgcggtcacaggac
atatggagttcttatccattaaaacattactatataatgcaaagcctcaa
gaaatcaaagtaaaaattatccaggcatcacaatccaaggtagctcttct
ggcataggttattggtaaatcaagctgatatatcaaacagatgagtgttg
agttccactagggagatagtgtttctcacaatagcaaagaactgatttaa
acgatttatctgtttgcaatggcattcattacagtagttgtcagatcaga
ggatgctgaaccgactggtgataaaagatacacctgtacaagatgagact
atgaataattatttttgattggcactgtctgaaatgtcagtagtcagttg
acctcgatccttcgtgtgagatagacttgaatacgtacttctggataact
aaagctgattacggcatgaacaatgccta
gaattctctaatggtaactaaattaaaatgaagattattgacagaagcta
tatacattcgagaaggaaataattatgaaatcactaatatgtttgccgat
aaatattgttgacattttcatagagaaatacaaaataaaagtaaaaatat
ttatcaaagacactatggaggacactatcatcaactgatgaaagcttaca
aggtatatttctttattaggtatttatttcatttacatttccaatgctat
cccaaaagtccctcacctgctcccccacccacccacttccacttcttgga
cctggcgttcccctatactgaggcagataaagtttacacgaccaatgggc
ctctctttccactgatggctgactaggccatcttctgattcatatgcagc
tagagacacgagctctgggaggggggtactggttagttcttattgttgtt
ccacctatagggttgcaaatccctttagctccttggttactttctctagt
tcctccattgggagccctgtgacccatccaatagctgactgtgagcatcc
acttctgtgtttgctagccccctgcatagcctcacaagagacagctatat
cagggtcctttcagcaaactcttgctagtgtatacaatggtgtcagcgtt
tggaggctgattatgggatggatccctggatatggcagtctctagatggt
ccatccatttgtctcagctccaaactttgtctctgtaactccttccatgg
gtgttttgttcccaattctaagaaggggcaaagtgtccacactttggtct
tcgttcttcttgagttttatgtgtttagcaaattgtatcttatatcttgg
gtattcttttttaatgtctacctttgctttactttctctatttttaatta
atcattccattagtttaaatctcaaatgatatccctctttctggtatcca
tcaacaaattccccatctcatgatatacacttcttggttaccttactcat
tacctatccacatctgccctccacctccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60307401_60308670
seq2: B6Ng01-025M18.b_44_1272

seq1  GAATTCCCACTAACAATCCTTTCCTGCCACTCCCTGTGGTGTGTTACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTAACAATCCTTTCCTGCCACTCCCTGTGGTGTGTTACACC  50

seq1  ATGGTAGTTTTTACCTAGCATGCAATTTACCTAGCATTGCACTGCATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTTTTACCTAGCATGCAATTTACCTAGCATTGCACTGCATGAT  100

seq1  ATAGGAAGTGCCAGCTAGAATTATAAAGGTTTCTGAAACAAGAAAAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGTGCCAGCTAGAATTATAAAGGTTTCTGAAACAAGAAAAGGTA  150

seq1  TCCTGCTATGTTTTGAATGAAGCTAAATTTAGTGAAAGAAACATAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTATGTTTTGAATGAAGCTAAATTTAGTGAAAGAAACATAGGTCT  200

seq1  TGTATGCACAGTAACTGCTCTGGTACTCAGAAAAGTATCACAGAGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACAGTAACTGCTCTGGTACTCAGAAAAGTATCACAGAGTTTTA  250

seq1  TTTGAAAACCTAAGACTCTGAGCTTTAAAATAAAATGTTTAATATGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACCTAAGACTCTGAGCTTTAAAATAAAATGTTTAATATGTACA  300

seq1  ACACATAATTTTCCTTAAAAATGACCCACTGACAAGTATAGTGAGAGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATTTTCCTTAAAAATGACCCACTGACAAGTATAGTGAGAGTCG  350

seq1  TATGGTGACATAACTTAAAAGAACTTGGGTCAATAAAACAAAGAATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGACATAACTTAAAAGAACTTGGGTCAATAAAACAAAGAATAAAA  400

seq1  ATATGAAGGACAATAAAGACAATTTTTATTAATAACAAATCTTGTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGGACAATAAAGACAATTTTTATTAATAACAAATCTTGTAATAT  450

seq1  ATGCTATATTTGCTCTAAAGAGCAGGTCTTCCTAGTGTGCTAAATGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATATTTGCTCTAAAGAGCAGGTCTTCCTAGTGTGCTAAATGGAAG  500

seq1  ACAGTTCTCATGGATGATGTTGAAAGGAAATTACATCTGAATAAGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTCATGGATGATGTTGAAAGGAAATTACATCTGAATAAGATTGC  550

seq1  ATATGTTTCACAGGATATAACATGCAGCGGTTAGGGGCTTGGCTAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTCACAGGATATAACATGCAGCGGTTAGGGGCTTGGCTAGAACT  600

seq1  CAGTTGAGCAATACTTGAGTCATGAACTAACTTCTCCCTGTGCTATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGCAATACTTGAGTCATGAACTAACTTCTCCCTGTGCTATCTGT  650

seq1  TCAGTAAGAAAGTCCTGGTTGCAGAATTTAACTTTGCTTAATGGAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGAAAGTCCTGGTTGCAGAATTTAACTTTGCTTAATGGAATTGT  700

seq1  TAAAAATCTTGATGTGGACAACTGGAAGAAAGAGCCTTTTGTGTCTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTTGATGTGGACAACTGGAAGAAAGAGCCTTTTGTGTCTATAA  750

seq1  AGAAATATTTACATATGCTGACCTCAAATTCAGTGTTGCGGTCACAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTACATATGCTGACCTCAAATTCAGTGTTGCGGTCACAGGAC  800

seq1  ATATGGAGTTCTTATCCATTAAAACATTACTATATAATGCAAAGCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTTCTTATCCATTAAAACATTACTATATAATGCAAAGCCTCAA  850

seq1  GAAATCAAAGTAAAAATTATCCAGGCATCACAATCCAAGGTAGCTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAGTAAAAATTATCCAGGCATCACAATCCAAGGTAGCTCTTCT  900

seq1  GGCATAGGTTATTGGTAAATCAAGCTGATATATCAAACAGATGAGGTGTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCATAGGTTATTGGTAAATCAAGCTGATATATCAAACAGATGA-GTGTT  949

seq1  GAGTTCCACTAGGGAGATAGTGTTTCCTCACAAATAGCAAAGAAACTGAT  1000
      ||||||||||||||||||||||||| ||||| |||||||||| |||||||
seq2  GAGTTCCACTAGGGAGATAGTGTTT-CTCAC-AATAGCAAAG-AACTGAT  996

seq1  TTAAACGATTTATCTGTTTGCAAATGGCATTCCATACAGTAAGTGTCAGA  1050
      ||||||||||||||||||||| ||||||||||  |||||||  |||||||
seq2  TTAAACGATTTATCTGTTTGC-AATGGCATTCATTACAGTAGTTGTCAGA  1045

seq1  TCAGAAGGGAATGCTGACACGACTGGGTGATAAAAGATACA-CTGTGACA  1099
      |||||   | |||||||  ||||| |||||||||||||||| |||| |||
seq2  TCAGA---GGATGCTGAACCGACT-GGTGATAAAAGATACACCTGT-ACA  1090

seq1  AGATTAGAGAACTATGATAAATTAATTTTTGATTTGTCACTGTTCTTGAG  1149
      |||| ||   |||||||  |||| |||||||| ||| ||||||   ||| 
seq2  AGATGAG---ACTATGAATAATT-ATTTTTGA-TTGGCACTGT--CTGA-  1132

seq1  ATAGTGTCCAGTAGTCCAGGTTGACCTCAGATTCACTACGTAGTTGAGGA  1199
        | ||| ||||||||   ||||||||| |||   || |||   ||| ||
seq2  --AATGT-CAGTAGTC--AGTTGACCTC-GAT--CCTTCGT--GTGA-GA  1171

seq1  TAGACTTGAATTACCAGCTACCTTTCCTCTGACTCCTAAAAGCTGGGATT  1249
      |||||||||||          | | | ||||  |    ||||||  ||||
seq2  TAGACTTGAAT---------ACGTACTTCTGGATAACTAAAGCT--GATT  1210

seq1  ACAGGCATGAACCAATGCCTA  1270
      || |||||||| |||||||||
seq2  AC-GGCATGAA-CAATGCCTA  1229

seq1: chr9_12030247_12030442
seq2: B6Ng01-025M18.g_287_486

seq1  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACAC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCTCACCT  50

seq1  ACTCC----CCCACCCACTACCACTTTTTGGCCCTGGCGTTCCCCTGTAC  96
       ||||    |||||||||| |||||| |||| |||||||||||||| |||
seq2  GCTCCCCCACCCACCCACTTCCACTTCTTGGACCTGGCGTTCCCCTATAC  100

seq1  TGAGGCAGATAAAGTTTGCATGACCAATGGGCCTCTCTTTTCACTGATGG  146
      ||||||||||||||||| || ||||||||||||||||||| |||||||||
seq2  TGAGGCAGATAAAGTTTACACGACCAATGGGCCTCTCTTTCCACTGATGG  150

seq1  CTGACTAGGTCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGG  196
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CTGACTAGGCCATCTTCTGATTCATATGCAGCTAGAGACACGAGCTCTGG  200