BAC Information

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BAC

Clone NameB6Ng01-027B22
Chromosome16 (Build37)
Map Location 93,390,743 - 93,498,094
singlet/doubletdoublet
Overlap genenone
Upstream geneDscr1, 2410124H12Rik, Clic6, Runx1, EG666023, LOC100040747
Downstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B22.bB6Ng01-027B22.g
ACCDH857954DH857955
length1,079617
definitionDH857954|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B22, 5' end.DH857955|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,497,003 - 93,498,094)(93,390,743 - 93,391,357)
sequence
gaattccagatgcctgggaactctgtcaggtccactccatgctaagcctg
gtggatcagcttgcttcttttttcatttgtctaagaaagagtgtaaagaa
attttaatctaacaaaatggcgactctgacatgagatcacatccaaagac
cttcttggtctgtgtaatccagctggaatacagacatgcctttactccaa
agagacagaggcaagcagatctctgagttcaaggcaagtctggtatagag
caagttacagataaagaaaagctgacatccaggcatggaggtatatgcct
ttaatcctagtactcaggagacagaggcatgcagaactctgagttctact
cagtcagtttggttgagtcagtgaattgaaggccatacaggggagtggag
ttcatgactgttcaggtgtggagttcagaggaagtttttacaggaacagt
tgtacagagacaggttgcagagagaacaagctagacacaggtaaagacag
aatgagccagagaatgagaaggagcctgaagattagaacagattgccaga
gttagtttgaggccaagcagagcaattccgtgtaaaacagggaaaccagt
ttgaaacagcttagagaggagtttgagccagaacagctaagttaaaccag
acagacagagcacagagaaaactagaaaggacaaacttattaaacagtag
tctcagaggctgaaaacattttagccctagataagattgtacaaagacaa
gaagcttccaggactaggccgaggttagcagactgaggcagtgagcctca
gaaacgacaattacatcattacatcaagcaaatcaaggggttattacaaa
gatcgtggcattgattcctaaagtgattgtattgattattcttagaaaaa
aatctacatgtacactttgtgtatacatttaaatacacatcttttgaaag
aaaaaaaaaggcatttgccctccccccacagcaaaaaccctttcattaag
gaaaggaaacacagcattgaaaggatttcttccttttgatttctctatat
ggggtggggtggggcatgtgcatgtgtgc
gaattcaacgggaggtggagaggaagcttcctccaagactctctggagat
ggagtcggttgatggagatggaggaggcccctgggtgtgaaatttctgcc
accattgcgagctcactctactaccagtggctacaggccaagggcactga
gtcttgtctctgatctctgatgctgacattttggctgtgggcagaaattc
actgtccagtattttccagcttccagatgcaaagcctgcccagcaggtct
gaaacctacggcttgagaagtctgtgagggctagaaccgcccacagcact
gcaagccagctctgctctgctagcatcccaacacgcccaagagttatgag
atgaaatgcttctcagagctccacgggctctcggcgagcatcaggcacca
ctgagggttccaacctgttttgttaaaatcccatgaagccgtctgtgtta
gtttgttttatccccttcaaggttattaatcctcaattacaacaaagcac
ttcctgtttggacttcgcaatgcctgcccactctgtttcttgaaggcggg
tagagcaagatccaagttgggggacagaagagggtcttccagtaacctcc
tcagcatcacctaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93497003_93498094
seq2: B6Ng01-027B22.b_44_1122 (reverse)

seq1  GCACACATGCACATGCACACACACACACCATATATAGAGAAATACAAAAA  50
      |||||||||||||||| | ||| | ||||  ||||||||||||    |||
seq2  GCACACATGCACATGC-CCCAC-CCCACCCCATATAGAGAAAT---CAAA  45

seq1  AGGAAAGAAAATCCTTTCAATGCTTGTGTTTTCCTTTCCTTAATGAAAAG  100
      |||||   ||||||||||||||| |||| |||||||||||||||| ||||
seq2  AGGAA--GAAATCCTTTCAATGC-TGTG-TTTCCTTTCCTTAATG-AAAG  90

seq1  GGTTTTCTGCTGTGGGGGGAGGGCAAATGCCTTTTTTTTTTCTTTCAAAA  150
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTTT-TGCTGTGGGGGGAGGGCAAATGCC-TTTTTTTTTCTTTCAAAA  138

seq1  GATGTGTATTTAAATGTATACACAAAGTGTACATGTAGATTTTTTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGTGTATTTAAATGTATACACAAAGTGTACATGTAGA-TTTTTTTCTA  187

seq1  AGAATAATCAATACAATCACTTTAGGAATCAATGCCACGATCTTTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATCAATACAATCACTTTAGGAATCAATGCCACGATCTTTGTAAT  237

seq1  AACCCCTTGATTTGCCTGATGTAATGATGTAATTGTCGTTTCTGAGGCTC  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCCCTTGATTTGCTTGATGTAATGATGTAATTGTCGTTTCTGAGGCTC  287

seq1  ACTGCCTCAGTCTGCTAACCTCGGCCTAGTCCTGGAAGCTTCTTGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCAGTCTGCTAACCTCGGCCTAGTCCTGGAAGCTTCTTGTCTTT  337

seq1  GTACAATCTTATCTAGGGCTAAAATGTTTTCAGCCTCTGAGACTACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATCTTATCTAGGGCTAAAATGTTTTCAGCCTCTGAGACTACTGTT  387

seq1  TAATAAGTTTGTCCTTTCTAGTTTTCTCTGTGCTCTGTCTGTCTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTTTGTCCTTTCTAGTTTTCTCTGTGCTCTGTCTGTCTGGTTTA  437

seq1  ACTTAGCTGTTCTGGCTCAAACTCCTCTCTAAGCTGTTTCAAACTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTGTTCTGGCTCAAACTCCTCTCTAAGCTGTTTCAAACTGGTTT  487

seq1  CCCTGTTTTACACGGAATTGCTCTGCTTGGCCTCAAACTAACTCTGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTTACACGGAATTGCTCTGCTTGGCCTCAAACTAACTCTGGCAA  537

seq1  TCTGTTCTAATCTTCAGGCTCCTTCTCATTCTCTGGCTCATTCTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTAATCTTCAGGCTCCTTCTCATTCTCTGGCTCATTCTGTCTTT  587

seq1  ACCTGTGTCTAGCTTGTTCTCTCTGCAACCTGTCTCTGTACAACTGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCTAGCTTGTTCTCTCTGCAACCTGTCTCTGTACAACTGTTCC  637

seq1  TGTAAAAACTTCCTCTGAACTCCACACCTGAACAGTCATGAACTCCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACTTCCTCTGAACTCCACACCTGAACAGTCATGAACTCCACTC  687

seq1  CCCTGTATGGCCTTCAATTCACTGACTCAACCAAACTGACTGAGTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATGGCCTTCAATTCACTGACTCAACCAAACTGACTGAGTAGAAC  737

seq1  TCAGAGTTCTGCATGCCTCTGTCTCCTGAGTACTAGGATTAAAGGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTCTGCATGCCTCTGTCTCCTGAGTACTAGGATTAAAGGCATAT  787

seq1  ACCTCCATGCCTGGATGTCAGCTTTTCTTTATCTGTAACTTGCTCTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGCCTGGATGTCAGCTTTTCTTTATCTGTAACTTGCTCTATAC  837

seq1  CAGACTTGCCTTGAACTCAGAGATCTGCTTGCCTCTGTCTCTTTGGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGCCTTGAACTCAGAGATCTGCTTGCCTCTGTCTCTTTGGAGTA  887

seq1  AAGGCATGTCTGTATTCCAGCTGGATTACACAGACCAAGAAGGTCTTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTCTGTATTCCAGCTGGATTACACAGACCAAGAAGGTCTTTGG  937

seq1  ATGTGATCTCATGTCAGAGTCGCCATTTTGTTAGATTAAAATTTCTTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTCATGTCAGAGTCGCCATTTTGTTAGATTAAAATTTCTTTAC  987

seq1  ACTCTTTCTTAGACAAATGAAAAAAGAAGCAAGCTGATCCACCAGGCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTTAGACAAATGAAAAAAGAAGCAAGCTGATCCACCAGGCTTA  1037

seq1  GCATGGAGTGGACCTGACAGAGTTCCCAGGCATCTGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGTGGACCTGACAGAGTTCCCAGGCATCTGGAATTC  1079

seq1: chr16_93390743_93391357
seq2: B6Ng01-027B22.g_67_683

seq1  GAATTCAACGGGAGGTGGAGAGGAAGCTTCCTCCAAGACTCTCTGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGGGAGGTGGAGAGGAAGCTTCCTCCAAGACTCTCTGGAGAT  50

seq1  GGAGTCGGTTGATGGAGATGGAGGAGGCCCCTGGGTGTGAAATTTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGGTTGATGGAGATGGAGGAGGCCCCTGGGTGTGAAATTTCTGCC  100

seq1  ACCATTGCGAGCTCACTCTACTACCAGTGGCTACAGGCCAAGGGCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCGAGCTCACTCTACTACCAGTGGCTACAGGCCAAGGGCACTGA  150

seq1  GTCTTGTCTCTGATCTCTGATGCTGACATTTTGGCTGTGGGCAGAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTCTGATCTCTGATGCTGACATTTTGGCTGTGGGCAGAAATTC  200

seq1  ACTGTCCAGTATTTTCCAGCTTCCAGATGCAAAGCCTGCCCAGCAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGTATTTTCCAGCTTCCAGATGCAAAGCCTGCCCAGCAGGTCT  250

seq1  GAAACCTACGGCTTGAGAAGTCTGTGAGGGCTAGAACCGCCCACAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTACGGCTTGAGAAGTCTGTGAGGGCTAGAACCGCCCACAGCACT  300

seq1  GCAAGCCAGCTCTGCTCTGCTAGCATCCCAACACGCCCAAGAGTTATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGCTCTGCTCTGCTAGCATCCCAACACGCCCAAGAGTTATGAG  350

seq1  ATGAAATGCTTCTCAGAGCTCCACGGGCTCTCGGCGAGCATCAGGCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCTTCTCAGAGCTCCACGGGCTCTCGGCGAGCATCAGGCACCA  400

seq1  CTGAGGGTTCCAACCTGTTTTGTTAAAATCCCATGAAGCCGTCTGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTCCAACCTGTTTTGTTAAAATCCCATGAAGCCGTCTGTGTTA  450

seq1  GTTTGTTTTATCCCCTTCAAGGTTATTAATCCTCAATTACAACAAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTATCCCCTTCAAGGTTATTAATCCTCAATTACAACAAAGCAC  500

seq1  TTCCTGTTTGGACTTCGCAATGCCTGCCCACTCTG-TTCTTGAAGGCGGG  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCCTGTTTGGACTTCGCAATGCCTGCCCACTCTGTTTCTTGAAGGCGGG  550

seq1  TAGAGCAAGATCCAAGTT-GGGGACAGAAGAGGGTCTTCCAGTAACCTCC  598
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGAGCAAGATCCAAGTTGGGGGACAGAAGAGGGTCTTCCAGTAACCTCC  600

seq1  TCAGCATCACCTAAACA  615
      |||||||||||||||||
seq2  TCAGCATCACCTAAACA  617