BAC Information

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BAC

Clone NameB6Ng01-027O05
Chromosome16 (Build37)13 (Build37)
Map Location 26,754,733 - 26,755,71226,700,124 - 26,700,471
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027O05.bB6Ng01-027O05.g
ACCDH858510DH858511
length975555
definitionDH858510|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O05, 5' end.DH858511|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,754,733 - 26,755,712)(26,700,124 - 26,700,471)
sequence
gaattctgcatcaccttcaccagtgttagcactcagacggaggaaaactg
gtgtctgccttagctgcatacatgtgttgggaatattactgtcttcttta
ttttgaagtatatatattttattttatatatttttatttttaatattaat
actttcagttttcgaaatgatcttagtcaatattctaccgctaagaagac
acaacatgaccatgacaattctttctctctctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttcttaaa
tcctttcatatcctggcttccattaaccctccttctcccccagccctcct
atctcccctcagaaaagaacatacttctcagggactttaacaaaatatgc
tgtaataaactacaataagacaaggcacatactgctgggttttggtctgt
tgctctgtattcaaatgtttaattctgtatcccaagatctggttgcccaa
gacaagcagattcttatgtgcgcaagcatttgttgtataaatcttgcctc
cctaattagttaataaaagttgctgagagcctgtagctctgtagaagagc
tggacagaaaataggtaagcaggacaaacgttcccaggcttgggttctca
ggtatgaacccccgcaaaagaaagaggagatgaaaaaagaaggaagtcac
cctggaataatatggaccatgagggcttggctgatgaagtaggatcagtg
caagtaaaatatatggcaagtaatatattggcatttcaaggcatgaaagc
agataaaataccttagagggttgatatctgcccaggtccagtgttttgag
cttactagaattccaaggtctttgtgtcttttatttgggtaatagctggg
taaaaaatactactactgtattgatttccagaatattaattagcccttga
tattggaaccagtcaacatccatct
gaattcacataagccaacaccaggtttcatatttcataatgttctttatt
ttaaaaagtggtctatgattaaagtcatttgcaattaaagacaggattac
aggagctgagcaaagcataagaacccagatgcccctcaacagaggaatgg
atacagaaaatgtggtacatttacacaatggagtactactcagctattaa
aagaatgaatttatgaaattcctagccaaatggatggacctggagggcat
catcctgagtgaggtaacacattcacaaaggaactcacacaatatgtact
cactgataagtggatattagcccaaagcctaggatacccaagatataaga
tacaatttgctaaacacatgaaactcaagaagaatgaagactgaagtgtg
gacactatgcccctccttagaattgggaacaaaacacccatggaaggagt
tacagagacaaagtttggagctgagacgaaaggatggaccatgtagagac
tgccatatccagggatccaccccataatcagcttccaaacgctgacacca
ttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26754733_26755712
seq2: B6Ng01-027O05.b_44_1017

seq1  GAATTCTGCATCACCTTCACCAGTGTTAGCACTCAGACGGAGGAAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATCACCTTCACCAGTGTTAGCACTCAGACGGAGGAAAACTG  50

seq1  GTGTCTGCCTTAGCTGCATACATGTGTTGGGAATATTACTGTCTTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCTTAGCTGCATACATGTGTTGGGAATATTACTGTCTTCTTTA  100

seq1  TTTTGAAGTATATATATTTTATTTTATATATTTTTATTTTTAATATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGTATATATATTTTATTTTATATATTTTTATTTTTAATATTAAT  150

seq1  ACTTTCAGTTTTCGAAATGATCTTAGTCAATATTCTACCGCTAAGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTTTTCGAAATGATCTTAGTCAATATTCTACCGCTAAGAAGAC  200

seq1  ACAACATGACCATGACAATTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGACCATGACAATTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTT  250

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAAA  300

seq1  TCCTTTCATATCCTGGCTTCCATTAACCCTCCTTCTCCCCCAGCCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATATCCTGGCTTCCATTAACCCTCCTTCTCCCCCAGCCCTCCT  350

seq1  ATCTCCCCTCAGAAAAGAACATACTTCTCAGGGACTTTAACAAAATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCTCAGAAAAGAACATACTTCTCAGGGACTTTAACAAAATATGC  400

seq1  TGTAATAAACTACAATAAGACAAGGCACATACTGCTGGGTTTTGGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAACTACAATAAGACAAGGCACATACTGCTGGGTTTTGGTCTGT  450

seq1  TGCTCTGTATTCAAATGTTTAATTCTGTATCCCAAGATCTGGTTGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTATTCAAATGTTTAATTCTGTATCCCAAGATCTGGTTGCCCAA  500

seq1  GACAAGCAGATTCTTATGTGCGCAAGCATTTGTTGTATAAATCTTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCAGATTCTTATGTGCGCAAGCATTTGTTGTATAAATCTTGCCTC  550

seq1  CCTAATTAGTTAATAAAAGTTGCTGAGAGCCTGTAGCTCTGTAGAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAGTTAATAAAAGTTGCTGAGAGCCTGTAGCTCTGTAGAAGAGC  600

seq1  TGGACAGAAAATAGGTAAGCAGGACAAACGTTCCCAGGCTTGGGTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAAATAGGTAAGCAGGACAAACGTTCCCAGGCTTGGGTTCTCA  650

seq1  GGTATGAACCCCCGCAAAAGAAAGAGGAGATGAAAAAAGAAGGAAGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAACCCCCGCAAAAGAAAGAGGAGATGAAAAAAGAAGGAAGTCAC  700

seq1  CCTGGAATAATATGGACCATGAGGGCTTGGCTGATGAAGTAGGATCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATAATATGGACCATGAGGGCTTGGCTGATGAAGTAGGATCAGTG  750

seq1  CAAGTAAAATATATGGCAAGTAATATATTGGCA-TTCAAGGCATGAAAGC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAGTAAAATATATGGCAAGTAATATATTGGCATTTCAAGGCATGAAAGC  800

seq1  AGATAAAATACCTTAGAGGGTTGATATCTGCCCAGGTCCAGTGTTTTGAA  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGATAAAATACCTTAGAGGGTTGATATCTGCCCAGGTCCAGTGTTTTG-A  849

seq1  GCTTACTAGAATTCCAAAGGTCTTTGTGTCTTTTATTTGGGTAATAGCTG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTTACTAGAATTCC-AAGGTCTTTGTGTCTTTTATTTGGGTAATAGCTG  898

seq1  GTTAAAAAATAACTACTACTGTATTGATTTCCAGAATTATTTATTAGCCC  949
      | |||||||| ||||||||||||||||||||||||| |||| ||||| ||
seq2  GGTAAAAAAT-ACTACTACTGTATTGATTTCCAGAA-TATTAATTAG-CC  945

seq1  CATGATATTGAAACCAGTACAACATACCATC  980
      | |||||||| ||||||| |||||| |||||
seq2  CTTGATATTGGAACCAGT-CAACAT-CCATC  974

seq1: chr13_26700124_26700471
seq2: B6Ng01-027O05.g_105_622

seq1  AATGTTCTTTATTTTAAAATGTTATATTTGCATATTTGAAATTCTTATTT  50
      ||||||||||||||||||| ||  | | ||   |||  ||| || | || 
seq2  AATGTTCTTTATTTTAAAAAGTGGTCTATG---ATT--AAAGTCAT-TTG  44

seq1  TAA--AATGTTATATTTATAGG--------------TTTGAA-----ATT  79
       ||  || |  |   ||| |||              |  |||     || 
seq2  CAATTAAAGACAGGATTACAGGAGCTGAGCAAAGCATAAGAACCCAGATG  94

seq1  C----TAAC------ATG---ACAACAATTTTGGTTTATTTAGAAAAAAC  116
      |     |||      |||   |||  || | ||||  ||||| | ||   
seq2  CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG  144

seq1  AGAAGAAAT-AG-----AAAATATTTTATTTCAAACTTT-------AAAT  153
      || |  | | ||     |||| | |  ||||   |  ||       ||||
seq2  AGTACTACTCAGCTATTAAAAGAATGAATTTATGAAATTCCTAGCCAAAT  194

seq1  ------AATTTTAG---ATTTTATTGATT-----------TT--------  175
            |  |  ||   ||  |  ||| |           ||        
seq2  GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG  244

seq1  -TTTCATACAATA--TACT--CTGAT-----CATAGTCCCCCTCTTCCAT  215
         ||| ||||||  ||||  |||||      ||| |  |||    ||  
seq2  AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAGCCTA  294

seq1  CTCTGCC--------AAGATCC---TTCC----CAC-TGCCCCAACT--T  247
         | ||        ||||| |   || |    ||| ||    ||||   
seq2  GGATACCCAAGATATAAGATACAATTTGCTAAACACATG---AAACTCAA  341

seq1  CCCTTATCCACACTCGTTTTTG----CT----CTCTCCTTAAAAT-----  284
           ||  | |||    | ||    ||    | ||||||| |||     
seq2  GAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGA  391

seq1  ---------------AA-----TATATAGGTAAA----------------  298
                     ||     || | ||  |||                
seq2  ACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACG  441

seq1  AAAG---------------------------CTGGGATCCATCCCATAAT  321
      ||||                           | |||||||| ||||||||
seq2  AAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAAT  491

seq1  CAGCCTCCAAACGCTGACACCATTGCA  348
      |||| ||||||||||||||||||||||
seq2  CAGCTTCCAAACGCTGACACCATTGCA  518