BAC Information

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BAC

Clone NameB6Ng01-028F08
Chromosome16 (Build37)
Map Location 47,840,837 - 47,886,799
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F08.bB6Ng01-028F08.g
ACCDH858838DH858839
length1,076945
definitionDH858838|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F08, 5' end.DH858839|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,885,713 - 47,886,799)(47,840,837 - 47,841,778)
sequence
gaattcctcactatcacttgtctccagaatttatccctagttcaaaccag
cttccttgttggtctaccagggtcccaggcataggagtgctgagcactgt
tttcagggaacttcctgttttcctgggaacagctgactgttttaagtggg
ctaagtagagcatataccctgcagaaaggttctgcatgtggagaattgcc
agatacttgatattcagagtgatttgggggttttcttggtgtaatgatac
ctattgtggtctattttatgggaagggtttaaacaagtggttcatgggat
agcgctttatccactcaaacatcagtgaattcaggatgtctggatgaaaa
gagttctctagacaagacacacccttcagacagaaggagcagtcactaaa
gcatgggactatgagctttgtgcagtgttgccaacataggttcgaatagt
agcctacctgaacccctgtcctctcctctagatgttccctgctgggtgct
aattacatgttctcagaggtagtagtaaatggtatagctgagaaggagca
ggactcagccagccacaggcaatatacgtctatgccacctgcagcaggca
gtcccacacaacataggctaactgtttaaagagaaaatagatgagtcgct
agctagcgtttcatttatcacccttgcgacagcccaaggcagctgttgcc
atttcatttgcttgcctgacagctcaggtgttggaaggctttggttgctg
ctgttgtctggccctcagctctctgcttttctctcaggcatcttcagagt
cgtttcctcacaacttaaggtttttaagcacattgagacttggtgtcagt
aaagtacttacttgcaagaggatctatggcttacaaaggtcccttgtcag
atccaagcagaaataattctaagcaaaccatcccctaacctttgaagaaa
taaatcataccctttaaacgacctgtgtgcagcttccagtcccagctttc
aatgagtaagacctctctgggcactagatatgcatattttttaaacatat
aagagtgctggatatagctttgtgat
cggaattttcctttataaacacttatctcattatcagtttgtgttgattt
tattactagttattttctcctaaatatgttccatctgcttttaattttct
ggaaatcctctagaatttattgatgcctgcagatgtttctgtaacttctg
aaatgcttatgaatttaaagttaatgtgtatttctctgagttttcattag
agaagatagaaaaaggctcatgtaggctttctcatttgttcctaaaagct
tatatttcctacataccttctctaatttcaatacttcctaattctcgcct
gttttggcatctttcaaaagccctgaagatgaaagatatcacaagaaaaa
gttaaataatcactgaggcttctgtcacacattttaaggttacctgttct
cagtgttcccaacccccatcttctctacatgattcaatccaacatcatgg
cgctcaattttctcctgtttccaatattgataatatagaggtcacatatt
atcattatcatcatcttgatgaaaatgaaggcatgttttgtcacagcaaa
gggaccagaatgtcactgattagtcttcattaacaaataagggggtgcta
atacagaagaggagattgcatccctaactgcttctgaccatcaatctctg
atacctaaggagcaagtacatctagaagatcctgttgccccgatgtgagc
aagattaactccagtaatgattacataagtcattatttaaatatacccat
aaatgcagtgactgtgaactcaaatggcctagagtcagactctacagtca
actaattactgtaactacataaaatatttaaactcattgctcatcagttt
cttttgatttcggtaaatgtctttccagctaaatacttcttttatgaact
cctgcagaaagatggggagagggaggaagataggagggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47885713_47886799
seq2: B6Ng01-028F08.b_45_1120 (reverse)

seq1  ATCACAAAGCTATATCACAGCACTCTTTATATGTTTTAAAAAATATGCAT  50
      |||||||||||||||| |||||||| ||||||| ||||||||||||||||
seq2  ATCACAAAGCTATATC-CAGCACTC-TTATATG-TTTAAAAAATATGCAT  47

seq1  ATTCTAAGTTGCCCAGAGAGGTTCTTACCTCATTTGAAAGCTGGGACTGG  100
      | ||||   |||||||||||| ||||| |||| |||||||||||||||||
seq2  A-TCTA--GTGCCCAGAGAGG-TCTTA-CTCA-TTGAAAGCTGGGACTGG  91

seq1  AAGCCTGCACCACAGGTCGTTTAAAGGGTATGATTTATTTCTTCAAAGGT  150
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAG-CTGCA-CACAGGTCGTTTAAAGGGTATGATTTATTTCTTCAAAGGT  139

seq1  TAGGGGATGGTTTGCTTAGAATTATTTCTGCTTGGATCTGACAAGGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATGGTTTGCTTAGAATTATTTCTGCTTGGATCTGACAAGGGACC  189

seq1  TTTGTAAGCCATAGATCCTCTTGCAAGTAAGTACTTTACTGACACCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCCATAGATCCTCTTGCAAGTAAGTACTTTACTGACACCAAGT  239

seq1  CTCAATGTGCTTAAAAACCTTAAGTTGTGAGGAAACGACTCTGAAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGTGCTTAAAAACCTTAAGTTGTGAGGAAACGACTCTGAAGATGC  289

seq1  CTGAGAGAAAAGCAGAGAGCTGAGGGCCAGACAACAGCAGCAACCAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAAAGCAGAGAGCTGAGGGCCAGACAACAGCAGCAACCAAAGC  339

seq1  CTTCCAACACCTGAGCTGTCAGGCAAGCAAATGAAATGGCAACAGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACACCTGAGCTGTCAGGCAAGCAAATGAAATGGCAACAGCTGCC  389

seq1  TTGGGCTGTCGCAAGGGTGATAAATGAAACGCTAGCTAGCGACTCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTCGCAAGGGTGATAAATGAAACGCTAGCTAGCGACTCATCTA  439

seq1  TTTTCTCTTTAAACAGTTAGCCTATGTTGTGTGGGACTGCCTGCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTAAACAGTTAGCCTATGTTGTGTGGGACTGCCTGCTGCAGG  489

seq1  TGGCATAGACGTATATTGCCTGTGGCTGGCTGAGTCCTGCTCCTTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGACGTATATTGCCTGTGGCTGGCTGAGTCCTGCTCCTTCTCAG  539

seq1  CTATACCATTTACTACTACCTCTGAGAACATGTAATTAGCACCCAGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCATTTACTACTACCTCTGAGAACATGTAATTAGCACCCAGCAGG  589

seq1  GAACATCTAGAGGAGAGGACAGGGGTTCAGGTAGGCTACTATTCGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTAGAGGAGAGGACAGGGGTTCAGGTAGGCTACTATTCGAACCT  639

seq1  ATGTTGGCAACACTGCACAAAGCTCATAGTCCCATGCTTTAGTGACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCAACACTGCACAAAGCTCATAGTCCCATGCTTTAGTGACTGCT  689

seq1  CCTTCTGTCTGAAGGGTGTGTCTTGTCTAGAGAACTCTTTTCATCCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTGAAGGGTGTGTCTTGTCTAGAGAACTCTTTTCATCCAGAC  739

seq1  ATCCTGAATTCACTGATGTTTGAGTGGATAAAGCGCTATCCCATGAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATTCACTGATGTTTGAGTGGATAAAGCGCTATCCCATGAACCA  789

seq1  CTTGTTTAAACCCTTCCCATAAAATAGACCACAATAGGTATCATTACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTAAACCCTTCCCATAAAATAGACCACAATAGGTATCATTACACC  839

seq1  AAGAAAACCCCCAAATCACTCTGAATATCAAGTATCTGGCAATTCTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCCCCAAATCACTCTGAATATCAAGTATCTGGCAATTCTCCAC  889

seq1  ATGCAGAACCTTTCTGCAGGGTATATGCTCTACTTAGCCCACTTAAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACCTTTCTGCAGGGTATATGCTCTACTTAGCCCACTTAAAACA  939

seq1  GTCAGCTGTTCCCAGGAAAACAGGAAGTTCCCTGAAAACAGTGCTCAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGTTCCCAGGAAAACAGGAAGTTCCCTGAAAACAGTGCTCAGCA  989

seq1  CTCCTATGCCTGGGACCCTGGTAGACCAACAAGGAAGCTGGTTTGAACTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGCCTGGGACCCTGGTAGACCAACAAGGAAGCTGGTTTGAACTA  1039

seq1  GGGATAAATTCTGGAGACAAGTGATAGTGAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATTCTGGAGACAAGTGATAGTGAGGAATTC  1076

seq1: chr16_47840837_47841778
seq2: B6Ng01-028F08.g_67_1008

seq1  AATTTTCCTTTATAAACACTTATCTCATTATCAGTTTGTGTTGATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTTTATAAACACTTATCTCATTATCAGTTTGTGTTGATTTTAT  50

seq1  TACTAGTTATTTTCTCCTAAATATGTTCCATCTGCTTTTAATTTTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTATTTTCTCCTAAATATGTTCCATCTGCTTTTAATTTTCTGGA  100

seq1  AATCCTCTAGAATTTATTGATGCCTGCAGATGTTTCTGTAACTTCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTAGAATTTATTGATGCCTGCAGATGTTTCTGTAACTTCTGAAA  150

seq1  TGCTTATGAATTTAAAGTTAATGTGTATTTCTCTGAGTTTTCATTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGAATTTAAAGTTAATGTGTATTTCTCTGAGTTTTCATTAGAGA  200

seq1  AGATAGAAAAAGGCTCATGTAGGCTTTCTCATTTGTTCCTAAAAGCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAAAAGGCTCATGTAGGCTTTCTCATTTGTTCCTAAAAGCTTAT  250

seq1  ATTTCCTACATACCTTCTCTAATTTCAATACTTCCTAATTCTCGCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTACATACCTTCTCTAATTTCAATACTTCCTAATTCTCGCCTGTT  300

seq1  TTGGCATCTTTCAAAAGCCCTGAAGATGAAAGATATCACAAGAAAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCTTTCAAAAGCCCTGAAGATGAAAGATATCACAAGAAAAAGTT  350

seq1  AAATAATCACTGAGGCTTCTGTCACACATTTTAAGGTTACCTGTTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCACTGAGGCTTCTGTCACACATTTTAAGGTTACCTGTTCTCAG  400

seq1  TGTTCCCAACCCCCATCTTCTCTACATGATTCAATCCAACATCATGGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAACCCCCATCTTCTCTACATGATTCAATCCAACATCATGGCGC  450

seq1  TCAATTTTCTCCTGTTTCCAATATTGATAATATAGAGGTCACATATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCTCCTGTTTCCAATATTGATAATATAGAGGTCACATATTATC  500

seq1  ATTATCATCATCTTGATGAAAATGAAGGCATGTTTTGTCACAGCAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCATCTTGATGAAAATGAAGGCATGTTTTGTCACAGCAAAGGG  550

seq1  ACCAGAATGTCACTGATTAGTCTTCATTAACAAATAAGGGGGTGCTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGTCACTGATTAGTCTTCATTAACAAATAAGGGGGTGCTAATA  600

seq1  CAGAAGAGGAGATTGCATCCCTAACTGCTTCTGACCATCAATCTCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGAGATTGCATCCCTAACTGCTTCTGACCATCAATCTCTGATA  650

seq1  CCTAAGGAGCAAGTACATCTAGAAGATCCTGTTGCCCCGATGTGAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAGCAAGTACATCTAGAAGATCCTGTTGCCCCGATGTGAGCAAG  700

seq1  ATTAACTCCAGTAATGATTACATAAGTCATTATTTAAATATACCCATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCAGTAATGATTACATAAGTCATTATTTAAATATACCCATAAA  750

seq1  TGCAGTGACTGTGAACTCAAATGGCCTAGAGTCAGACTCTACAGTCAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGACTGTGAACTCAAATGGCCTAGAGTCAGACTCTACAGTCAACT  800

seq1  AATTACTGTAACTACATAAAATATTTAAACTCATTGCTCATCAGTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGTAACTACATAAAATATTTAAACTCATTGCTCATCAGTTTCTT  850

seq1  TTGATTTCGGTAAATGTCTTTCCAGCTAAATACTTCTTTTATGAACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCGGTAAATGTCTTTCCAGCTAAATACTTCTTTTATGAACTCCT  900

seq1  GCAGAAAGATGGGGAGAGGGAGGAAGATAGGAGGGAGAGAGA  942
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGATGGGGAGAGGGAGGAAGATAGGAGGGAGAGAGA  942