BAC Information

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BAC

Clone NameB6Ng01-028N11
Chromosome16 (Build37)
Map Location 37,194,101 - 37,194,906
singlet/doubletsinglet
Overlap geneStxbp5l
Upstream geneEG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N11.bB6Ng01-028N11.g
ACCDH859213DH859214
length1,1261,146
definitionDH859213|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N11, 5' end.DH859214|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaataccctatttggtataagctccaaggtatagcagtataaa
gagaaatataacatagtttcaaagaggtatatgacagagtgttttcagaa
cagaaagataataatttaacctaagaatactggagaaatttagctggaaa
gatacagagagactgttgcaggcatggatgaagtgggcccaagtaaatct
caatgacagcagatcttgttggtcaacagtgctggttttgaagacatgta
gtatacaagagttacagagtcatagaggcttccacaaagatgtcaaaaag
aaagttcaaagagccaaatcagagtccctgtaatcatctagttggttgat
gcaagaatctatgaaagtaaagacgaagcatcaactggactctcccctca
aataaagatactaatcgtctcctataggcagctctaggtggcatgcaaag
tcaccatattcgtctatgctaaataattacacttgggatttctaaatcaa
agtgcttggagcatccaaagccctctgggtaccccaggtgttaagtagag
aactataggatttaatgttttctttattggacaaagacttgctttgacct
aatcctttcctgtattcttaactctacccatttgaattgggaatgattta
ttgtgtaccattgtttcttgaagtatgtgactcatctttttattgcttat
acatgtttacaactgagtggactttggacttggttttttgagaaatgctg
taatggttaactttctggggtctcttggagagagactgaagtctttttca
ttgtaagctagatataagtctttcttggccaggggtacactgctctattt
tggtcagaaaagtccctgaaaagttcaggtagtaaacagtgggccccaag
ctggcactaccaggcactagtgggagctttaagagatgggtcttaatggg
acggaagttgcttatatattcttgaggaagactaggtacagcctttgtct
tttctcatttccagcaccagcagtagaatatttgctctctatgtctctac
aacatggtgccttgaataaggccccaagaaacaacaagcactaactatga
ctgactcagagatgagctttccttcc
gaattctttgtttagctctgagccccattttttactggggttatttgatt
ttctggagtccactttcttgagttctttatatatatattggatattagtc
ccctatctgatttaggataggtaaagatcctttcccaatcttttggtggc
ctttttgtcttattgaaggtttcttttgccttacagaagctttgcaattt
tatgaggtcccatttgtcgattcttgatcttacagcacaagccttgctgt
tctattcaggaaattttcccctgtgcccatatcttcgaggcttttccgca
ctttctcctctataaatttcactgtctctggttttatgtggaattcctta
atccacttagatttgaccttagtacaaggagataggaatggatcaattcg
cattcttctacatgataaccaccactttgccagcaacatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtctttgattctattccattgg
tctacttgtctgtcactataccagtactatgcagggtttttgttttgttt
tgttttgttttgttttgttttgttttttatcaaaattgctctgtagtaca
gctttaggtttggcatgatgataccaccagaggttcttttatcattgaga
agagtttttgctatcctaggttttttgttattccagatgaatttacagat
agccctttataatttgttgaagaattgagttggaattttgatggggattg
cattgaatctgtagattgcttttggcaagatagccatttttactatattg
atcttgccaatccatgagcatgggagatctttccatcttctgagaccttt
ctttaatttcttcttcagagacttgagttcttatcatacagatctttcac
tttcttagtagagtcaagtattttaatattatttggtgattattgtgaag
ggcattgtttccctatttctttcctcagcctgttttatcttttggtagag
aagacattggactgttgagtattttattcagctgttttcggttagaagtc
tctgggattttgtctctaaaataccatacaacactgctgcaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37194101_37194906
seq2: B6Ng01-028N11.b_396_1170

seq1  CAAGAATCTATGAAAGTAAAGACGAAGCATCAACTGGACTCTCCCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTATGAAAGTAAAGACGAAGCATCAACTGGACTCTCCCCTCAA  50

seq1  ATAAAGATACTAATCGTCTCCTATAGGCAGCTCTAGGTGGCATGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATACTAATCGTCTCCTATAGGCAGCTCTAGGTGGCATGCAAAGT  100

seq1  CACCATATTCGTCTATGCTAAATAATTACACTTGGGATTTCTAAATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATTCGTCTATGCTAAATAATTACACTTGGGATTTCTAAATCAAA  150

seq1  GTGCTTGGAGCATCCAAAGCCCTCTGGGTACCCCAGGTGTTAAGTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGAGCATCCAAAGCCCTCTGGGTACCCCAGGTGTTAAGTAGAGA  200

seq1  ACTATAGGATTTAATGTTTTCTTTATTGGACAAAGACTTGCTTTGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGATTTAATGTTTTCTTTATTGGACAAAGACTTGCTTTGACCTA  250

seq1  ATCCTTTCCTGTATTCTTAACTCTACCCATTTGAATTGGGAATGATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTGTATTCTTAACTCTACCCATTTGAATTGGGAATGATTTAT  300

seq1  TGTGTACCATTGTTTCTTGAAGTATGTGACTCATCTTTTTATTGCTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCATTGTTTCTTGAAGTATGTGACTCATCTTTTTATTGCTTATA  350

seq1  CATGTTTACAACTGAGTGGACTTTGGACTTGGTTTTTTGAGAAATGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTACAACTGAGTGGACTTTGGACTTGGTTTTTTGAGAAATGCTGT  400

seq1  AATGGTTAACTTTCTGGGGTCTCTTGGAGAGAGACTGAAGTCTTTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAACTTTCTGGGGTCTCTTGGAGAGAGACTGAAGTCTTTTTCAT  450

seq1  TGTAAGCTAGATATAAGTCTTTCTTGGCCAGGGGTACACTGCTCTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTAGATATAAGTCTTTCTTGGCCAGGGGTACACTGCTCTATTTT  500

seq1  GGTCAGAAAAGTCCCTGAAAAGTTCAGGTAGTAAACAGTGGGCCCCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAAAGTCCCTGAAAAGTTCAGGTAGTAAACAGTGGGCCCCAAGC  550

seq1  TGGCACTACCAGGCACTAGTGGAAGCTTTAAGAGATGGGTCTTAATGGGA  600
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TGGCACTACCAGGCACTAGTGGGAGCTTTAAGAGATGGGTCTTAATGGG-  599

seq1  ACGGAAGGTTGCTTATATATTCTTGAAGGAAAGACTAGGGTACAAGCCTT  650
      |||||| |||||||||||||||||||  | ||||||| ||||| ||||||
seq2  ACGGAA-GTTGCTTATATATTCTTGA--GGAAGACTA-GGTAC-AGCCTT  644

seq1  TGTTCTTTTTTCCCATTTCCCAGCCACCAGCAAGTTAGAATATTTGCTCT  700
      ||   | ||||| ||||| |||| ||||||||   |||||||||||||||
seq2  TG---TCTTTTCTCATTT-CCAG-CACCAGCA--GTAGAATATTTGCTCT  687

seq1  TCCATATGTTCTCTACAAACATTGGTGCCTTGATACAGGCCCCAAAGAAA  750
          |||| ||||||| |||| |||||||||||   ||||||| ||||||
seq2  ---CTATG-TCTCTAC-AACA-TGGTGCCTTGAATAAGGCCCC-AAGAAA  730

seq1  CAAACAGAGCCACCTAACTAATGACTGGAACTTCCAAGAGTATGAGCTTT  800
      |||  ||   || |||||| |||||||  |||    |||| |||||||||
seq2  CAACAAG---CA-CTAACT-ATGACTG--ACT---CAGAG-ATGAGCTTT  769

seq1  CCTTCC  806
      ||||||
seq2  CCTTCC  775