BAC Information

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BAC

Clone NameB6Ng01-028P08
Chromosome16 (Build37)
Map Location 48,161,607 - 48,321,050
singlet/doubletdoublet
Overlap geneEG637273, Dppa4, Dppa2
Upstream geneLOC628776, EG667741, EG639644
Downstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P08.bB6Ng01-028P08.g
ACCDH859293DH859294
length7821,029
definitionDH859293|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P08, 5' end.DH859294|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,161,607 - 48,162,534)(48,320,021 - 48,321,050)
sequence
gaattcaacaccttctggaactccacagcagcacatgacagggcaggaga
gctgggcttggtgagagaggatgctctttaagtaaaacaaaaggataatg
gaagattttaaaacaatacaatgaaataaatattcacacttaaattttgc
aggattgccttggctacattgctggagaaggaggaggaagaagaggagga
ggaagacctaaaaccaggaatacctataagtctgccttgtcatcatctat
gccaacagtgagagtggcatagatggagtactggagtactggaagaacaa
tttgctgaagaacagatggcaatctgtgcttataatatcaacagaatact
ttttttcttttttcttttttcttttttctttttttttttttttttttttt
ttttttttttttttttgggatttgggaaaaaaccccccgcccccctatgt
gctaccaaaaattcccggaatgccctgcctcccccctacacactgaaaag
tccaacatcccaaaccttcctcccaaatcagtgatgtcagctcccaatgt
gagtgactccaaaccctgatgacaggacctctgttttggaacatctctct
gctaatctgccatgtttaaaccacttcacccccttgcctctgccctcatt
tatacacacacatacacccacacatgggtgtatgtttgtgtatgaagtgt
gccgaaataaaattgtgttaatgagggattgaaaagtttttaaggagttt
tgcacaccctgtagcttcaatgggaaaaagta
gaattcaagacctctgaaagagcaaccagtggtgggttatggttttgttt
gcttgttttttgtactttgtagaccaggctggcctcgaacttagaaatcc
gcctgcctctgcctcctgagtgctgggattaaaggcgtgcgccaccacgc
ccggcttccttttttattaggtattttcttcatttacatttccaatgcta
tcccaaaagtccccctcctccttcctttctttggttcctctctccattct
ttttgttgttgaggcagcctagccacaaaatcctaaaatgactatttagt
ctaatctggcctcaatttgccacttgccatacgtaaggctggccttgtgc
tcccattaccctctggcttctgagcacccctgtgttctcagtgcatgtta
ctctgcatgagagcacagagggggctgaggtagaattagttccaaggcta
gcctggactacagcagaaatccgagctcaatctgggtcagctcaaaaaaa
cagactggaagatgcccaatatatcaagtgctggagtcgctatagaaaac
cttagggtcattccataaaaggtgaaatggtggtacctattacccatgcc
agcactagaatagtaggaagggggggctcagaagttccaagttatcctca
gctacaaggaaagtttgaaggcactcagagctaaggaagacttggtttaa
tcctaacaatatatcatggtgcactccagcagtctgggtgtagtggcaca
ccttatatctggtgatctgagaagcagaggcaagatcaagagtttggtat
tgacctaggttacacatcctgaagacaagcccgagacacatccgtctcaa
acctgtgtgcgagactgaacagacagagggcatgtttgtgatttggggga
ccagcccggggctcccagagtctctatctcaccatcatttacagctggga
ttgtagctctgtaaagtatgtgactgctagtatgctacagccctgggttg
gatgtcccagcattgtaccgctggtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48161607_48162534
seq2: B6Ng01-028P08.b_41_941

seq1  GAATTCAACACCTTCTGGAACTCCACAGCAGCACATGACAGGGCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCTTCTGGAACTCCACAGCAGCACATGACAGGGCAGGAGA  50

seq1  GCTGGGCTTGGTGAGAGAGGATGCTCTTTAAGTAAAACAAAAGGATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTTGGTGAGAGAGGATGCTCTTTAAGTAAAACAAAAGGATAATG  100

seq1  GAAGATTTTAAAACAATACAATGAAATAAATATTCACACTTAAATTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTTAAAACAATACAATGAAATAAATATTCACACTTAAATTTTGC  150

seq1  AGGATTGCCTTGGCTACATTGCTGGAGAAGGAGGAGGAAGAAGAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCTTGGCTACATTGCTGGAGAAGGAGGAGGAAGAAGAGGAGGA  200

seq1  GGAAGACCTAAAACCAGGAATACCTATAAGTCTGCCTTGTCATCATCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCTAAAACCAGGAATACCTATAAGTCTGCCTTGTCATCATCTAT  250

seq1  GCCAACAGTGAGAGTGGCATAGATGGAGTACTGGAGTACTGGAAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTGAGAGTGGCATAGATGGAGTACTGGAGTACTGGAAGAACAA  300

seq1  TTTGCTGAAGAACAGATGGCAATCTGTGCTTATAATATCAACAGAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAGAACAGATGGCAATCTGTGCTTATAATATCAACAGAATACT  350

seq1  TTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTT  400

seq1  TTTTTTTTTTTTTTTTGGTATTTGGCAATAAACCACCAGCCTCACTATGT  450
      |||||||||||||||||| |||||| || ||||| || ||| | ||||||
seq2  TTTTTTTTTTTTTTTTGGGATTTGGGAAAAAACCCCCCGCCCCCCTATGT  450

seq1  GCTACCAAAGATTCCAGGAATGCCCTGCCTCCACCCTACACACTGAACAG  500
      ||||||||| ||||| |||||||||||||||| |||||||||||||| ||
seq2  GCTACCAAAAATTCCCGGAATGCCCTGCCTCCCCCCTACACACTGAAAAG  500

seq1  TCCAACATCACAGACCTTCCTCCGAAGTCAGTGATGTCAGCTCCAGATGT  550
      ||||||||| || |||||||||| || |||||||||||||||||  ||||
seq2  TCCAACATCCCAAACCTTCCTCCCAAATCAGTGATGTCAGCTCCCAATGT  550

seq1  GAGTGACTCGAAACCCTGATGACAGGACCTCTGTTTTGGAACATCTCTCT  600
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTCCAAACCCTGATGACAGGACCTCTGTTTTGGAACATCTCTCT  600

seq1  GCTAATCTGCCATGTTTAAACCACTTCACCCTCTTGCCTCTGCCCTCATT  650
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTAATCTGCCATGTTTAAACCACTTCACCCCCTTGCCTCTGCCCTCATT  650

seq1  TATACACACACATACACACACACATGGGTGTATGTTTGTGTATGATGTGT  700
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TATACACACACATACACCCACACATGGGTGTATGTTTGTGTATGAAGTGT  700

seq1  GCTGAATTAAGAATTGTGTAAATGAGGGAGTTGAAAAAGTATTTAAAGGA  750
      || ||| ||| |||||||| ||||||||| ||| |||||| ||| |||||
seq2  GCCGAAATAA-AATTGTGTTAATGAGGGA-TTG-AAAAGT-TTTTAAGGA  746

seq1  GTTTTGCAACACCCTGTAGCTTCCAAATGGGAGAAGAGTAAATCGTCGTC  800
      ||||||| |||||||||||||||  ||||||| || ||||          
seq2  GTTTTGC-ACACCCTGTAGCTTC--AATGGGA-AAAAGTA----NNNNNN  788

seq1  TCTGAAAAGTCGTCATTTTCTCTTAACTTAGGGCCTGTCTGCATTCCTCA  850
                  ||||||| ||||||||||||| ||||||||||| ||||
seq2  NNNNNNNNNNNNTCATTTT-TCTTAACTTAGGG-CTGTCTGCATT-CTCA  835

seq1  CTGAGCTCTACAATGACACAGACAAACCTGAAAGTCAAAGTTTTTCATGC  900
       |||||| ||| |||| |||||| |||||| ||||| ||||||||| || 
seq2  -TGAGCT-TAC-ATGA-ACAGAC-AACCTG-AAGTC-AAGTTTTTC-TG-  876

seq1  ACATGGAGCCTCCCAAATGGGGGCAGGG  928
       | |||||||||||||   |||||||||
seq2  -CCTGGAGCCTCCCAA--TGGGGCAGGG  901

seq1: chr16_48320021_48321050
seq2: B6Ng01-028P08.g_69_1097 (reverse)

seq1  TACCA-CAGC-GTACAATGCT-GGACATTCAACCCAGGGCTGTAGGCATA  47
      ||||| |||| |||||||||| |||||| ||||||||||||||| |||||
seq2  TACCACCAGCGGTACAATGCTGGGACATCCAACCCAGGGCTGTA-GCATA  49

seq1  CTAGCAGGTCACATACTTTACAGAGCTACATTCCCAGCTGTAAATTGATG  97
      |||||| ||||||||||||||||||||||| ||||||||||||| |||||
seq2  CTAGCA-GTCACATACTTTACAGAGCTACAATCCCAGCTGTAAA-TGATG  97

seq1  GTGAGGATAGAGACTCTGGGGAGCCCC-GGCTGGTCCCCCAAATTCACAA  146
      |||| |||||||||||| ||||||||| ||||||||||||||| ||||||
seq2  GTGA-GATAGAGACTCT-GGGAGCCCCGGGCTGGTCCCCCAAA-TCACAA  144

seq1  ACATG-CCTCTGTCTGTTCAGTCTCGCACACAGGTTTGAGACGGATGTGT  195
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCTCTGTCTGTTCAGTCTCGCACACAGGTTTGAGACGGATGTGT  194

seq1  CTCGGGCTTGTCTTCAGGATGTGTAACCTAGGTCAATACCAAACTCTTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCTTGTCTTCAGGATGTGTAACCTAGGTCAATACCAAACTCTTGA  244

seq1  TCTTGCCTCTGCTTCTCAGATCACCAGATATAAGGTGTGCCACTACACCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCTGCTTCTCAGATCACCAGATATAAGGTGTGCCACTACACCC  294

seq1  AGACTGCTGGAGTGCACCATGATATATTGTTAGGATTAAACCAAGTCTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGGAGTGCACCATGATATATTGTTAGGATTAAACCAAGTCTTC  344

seq1  CTTAGCTCTGAGTGCCTTCAAACTTTCCTTGTAGCTGAGGATAACTTGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTGAGTGCCTTCAAACTTTCCTTGTAGCTGAGGATAACTTGGA  394

seq1  ACTTCTGAGCCCCCCCTTCCTACTATTCTAGTGCTGGCATGGGTAATAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGCCCCCCCTTCCTACTATTCTAGTGCTGGCATGGGTAATAGG  444

seq1  TACCACCATTTCACCTTTTATGGAATGACCCTAAGGTTTTCTATAGCGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCATTTCACCTTTTATGGAATGACCCTAAGGTTTTCTATAGCGAC  494

seq1  TCCAGCACTTGATATATTGGGCATCTTCCAGTCTGTTTTTTTGAGCTGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACTTGATATATTGGGCATCTTCCAGTCTGTTTTTTTGAGCTGAC  544

seq1  CCAGATTGAGCTCGGATTTCTGCTGTAGTCCAGGCTAGCCTTGGAACTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGAGCTCGGATTTCTGCTGTAGTCCAGGCTAGCCTTGGAACTAA  594

seq1  TTCTACCTCAGCCCCCTCTGTGCTCTCATGCAGAGTAACATGCACTGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCAGCCCCCTCTGTGCTCTCATGCAGAGTAACATGCACTGAGA  644

seq1  ACACAGGGGTGCTCAGAAGCCAGAGGGTAATGGGAGCACAAGGCCAGCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGGTGCTCAGAAGCCAGAGGGTAATGGGAGCACAAGGCCAGCCT  694

seq1  TACGTATGGCAAGTGGCAAATTGAGGCCAGATTAGACTAAATAGTCATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATGGCAAGTGGCAAATTGAGGCCAGATTAGACTAAATAGTCATTT  744

seq1  TAGGATTTTGTGGCTAGGCTGCCTCAACAACAAAAAGAATGGAGAGAGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTTGTGGCTAGGCTGCCTCAACAACAAAAAGAATGGAGAGAGGA  794

seq1  ACCAAAGAAAGGAAGGAGGAGGGGGACTTTTGGGATAGCATTGGAAATGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAAAGGAAGGAGGAGGGGGACTTTTGGGATAGCATTGGAAATGT  844

seq1  AAATGAAGAAAATACCTAATAAAAAAGGAAGCCGGGCGTGGTGGCGCACG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAAATACCTAATAAAAAAGGAAGCCGGGCGTGGTGGCGCACG  894

seq1  CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTAAGTTCG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTAAGTTCG  944

seq1  AGGCCAGCCTGGTCTACAAAGTACAAAAAACAAGCAAACAAAACCATAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAAAGTACAAAAAACAAGCAAACAAAACCATAAC  994

seq1  CCACCACTGGTTGCTCTTTCAGAGGTCTTGAATTC  1030
      |||||||||||||||||||||||||||||||||||
seq2  CCACCACTGGTTGCTCTTTCAGAGGTCTTGAATTC  1029