BAC Information

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BAC

Clone NameB6Ng01-029D20
Chromosome16 (Build37)
Map Location 97,770,644 - 97,913,286
singlet/doubletdoublet
Overlap geneMx2, Tmprss2
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D20.bB6Ng01-029D20.g
ACCDH859495DH859496
length1,0261,116
definitionDH859495|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D20, 5' end.DH859496|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,770,644 - 97,771,669)(97,912,160 - 97,913,286)
sequence
gaattcactatgtagaccaggctcacagagagcactaccatgcgtgggtt
tggtgttgattttgtggtgttctttgacctcttttgatagactattatgg
tgttgcctatttattccccataaattcttgagtatgtttatccttctctt
cagatcccagtatgattaacagtcataaattccctaagtctgtttttatc
ttggaagtttttatttctccgtcaattttaatagatagctttggtgagtg
taatagtctaggttgacatttgtgctttttcagaatttggaatacatctt
tccaagttttcctggctttaaaagtttccattgtgtgcatgtttttaatc
ccagcacttgagaggcagagataggtggatttctaggagctagagatcag
cctagtctacatagtgagttttaggacaaccagggactacatagagagac
cctggttcaaaataatcaaaacaaaagcttccattcaattccatttctat
tctagtatgtttgttatgttttttttaaatctgtttaaataaattgacca
gtgtagaaattgggtccctaataagagtaagctgtcacagcaggaagagt
tctaacgtccttatgccttgtattccaagcataacagtgccctgtgtgaa
cacagattctggcatgagactagtatagcttcatgcctttaagagctcat
ggcataaatcctgtcttgggccagggtgagtctccccactttacttgttc
atcacgcatatgcaaatacatgtcagtgaatttgtatagagacctggatc
tatatgtattgtatatatttctgtgtattatgtatgtgagtgtgcatatc
tgtactcatatgtgtagtctatatttggaagggtatgaatattaatatgt
attatacatgtatattgcacgtgttttggggaggtcctgcttagggttaa
acagtaatagtacaaatcactgtacagtcaaggctgctagcttgttttct
gggtcagttcttcaggtagccatcta
gaattcagtagctcaaagcctttagttccaacagtaagcaagttacactc
ccctgacaatgatatgaaaattcctagcattatgaacaaaataactcgat
tttgtagaacaaatttctgaacttcaggggaatgaaatgctatgctgtga
aacttaatacacttcgtgataggaaaacttagaaaacaaagaaacttaaa
ccatctttgtgtggtaaagaatctcacactgacactaccctgcccttctg
tcccatcccatcctagtccttctctgctacctcctcttcctcccacaccc
ctgtatcagagactccctgtgcagcagggctgcccacctatattaagaga
gctctatagctcttcactctttttcttttggtggaactgatcctgctcag
tctgatcatttcggaaagtctagccagttacaggagcacctggcaggtct
gttgcacatgtatcccagatcatgagggtgaatccttgaggctcctttgc
aactcctaaagggatttgtgccttcagagtcattgctgatggtaatgttc
atgtagttgcctgcaggcaggaaagccctaaaccttaggtatttctcaca
gaacatgtccttcttcttatgtttaatgtttagtacttgggatcagtttg
tgagtatgaaaaaaaaaaaaaaggtgggacaaacatgatttccatgccag
atactagatgttcccatgaagcatgtgactactggtcacctatagttatg
tgactataggtactgcctgagcagtcccaggaaactgaaccaaagggctt
cttgcccttaaagccttgggatgattaaacctagctctcgcaagaaactg
ataggattggactctcttgttcttggtggcatgtctctgacactggtccc
catccattcctacaggacttctgggacacttcatttttcttcttgtctat
tacttacctaaagaagattcagaaattctgcttggtcatttactctaatc
tggagcttttctcttatcagggaatctcacggaggatggtcccttattac
tttgccttctcttttttctgtgactaatagttgacgagtaattgaagaga
agtttactttggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97770644_97771669
seq2: B6Ng01-029D20.b_41_1066

seq1  GAATTCACTATGTAGACCAGGCTCACAGAGAGCACTACCATGCGTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCTCACAGAGAGCACTACCATGCGTGGGTT  50

seq1  TGGTGTTGATTTTGTGGTGTTCTTTGACCTCTTTTGATAGACTATTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGATTTTGTGGTGTTCTTTGACCTCTTTTGATAGACTATTATGG  100

seq1  TGTTGCCTATTTATTCCCCATAAATTCTTGAGTATGTTTATCCTTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTATTTATTCCCCATAAATTCTTGAGTATGTTTATCCTTCTCTT  150

seq1  CAGATCCCAGTATGATTAACAGTCATAAATTCCCTAAGTCTGTTTTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCAGTATGATTAACAGTCATAAATTCCCTAAGTCTGTTTTTATC  200

seq1  TTGGAAGTTTTTATTTCTCCGTCAATTTTAATAGATAGCTTTGGTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTTTTATTTCTCCGTCAATTTTAATAGATAGCTTTGGTGAGTG  250

seq1  TAATAGTCTAGGTTGACATTTGTGCTTTTTCAGAATTTGGAATACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCTAGGTTGACATTTGTGCTTTTTCAGAATTTGGAATACATCTT  300

seq1  TCCAAGTTTTCCTGGCTTTAAAAGTTTCCATTGTGTGCATGTTTTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTTCCTGGCTTTAAAAGTTTCCATTGTGTGCATGTTTTTAATC  350

seq1  CCAGCACTTGAGAGGCAGAGATAGGTGGATTTCTAGGAGCTAGAGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGAGAGGCAGAGATAGGTGGATTTCTAGGAGCTAGAGATCAG  400

seq1  CCTAGTCTACATAGTGAGTTTTAGGACAACCAGGGACTACATAGAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTACATAGTGAGTTTTAGGACAACCAGGGACTACATAGAGAGAC  450

seq1  CCTGGTTCAAAATAATCAAAACAAAAGCTTCCATTCAATTCCATTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCAAAATAATCAAAACAAAAGCTTCCATTCAATTCCATTTCTAT  500

seq1  TCTAGTATGTTTGTTATGTTTTTTTTAAATCTGTTTAAATAAATTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATGTTTGTTATGTTTTTTTTAAATCTGTTTAAATAAATTGACCA  550

seq1  GTGTAGAAATTGGGTCCCTAATAAGAGTAAGCTGTCACAGCAGGAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAATTGGGTCCCTAATAAGAGTAAGCTGTCACAGCAGGAAGAGT  600

seq1  TCTAACGTCCTTATGCCTTGTATTCCAAGCATAACAGTGCCCTGTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGTCCTTATGCCTTGTATTCCAAGCATAACAGTGCCCTGTGTGAA  650

seq1  CACAGATTCTGGCATGAGACTAGTATAGCTTCATGCCTTTAAGAGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCTGGCATGAGACTAGTATAGCTTCATGCCTTTAAGAGCTCAT  700

seq1  GGCATAAATCCTGTCTTGGGCCAGGGTGAGTCTCCCCACTTTACTTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAATCCTGTCTTGGGCCAGGGTGAGTCTCCCCACTTTACTTGTTC  750

seq1  ATCACGCATATGCAAATACATGTCAGTGAATTTGTATAGAGACCTGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGCATATGCAAATACATGTCAGTGAATTTGTATAGAGACCTGGATC  800

seq1  TATATGTATTGTATATATTTCTGTGTATTATGTATGTGAGTGTGCATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATTGTATATATTTCTGTGTATTATGTATGTGAGTGTGCATATC  850

seq1  TGTACTCATATGTGTAGCCTATA-TTGGAAGGGTATGAATATTAATATGT  899
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  TGTACTCATATGTGTAGTCTATATTTGGAAGGGTATGAATATTAATATGT  900

seq1  ATTATACATGTATATTGCAGGTGTTTTGGGGA-GTCCTGCTTAGGGTTTA  948
      ||||||||||||||||||| |||||||||||| |||||||||||||||  
seq2  ATTATACATGTATATTGCACGTGTTTTGGGGAGGTCCTGCTTAGGGTT--  948

seq1  ACACAGT-ATAGTACAAATCACTGTACAGTACAAGGCTGCTAGCCTGTTT  997
      | ||||| |||||||||||||||||||||| ||||||||||||| |||||
seq2  AAACAGTAATAGTACAAATCACTGTACAGT-CAAGGCTGCTAGCTTGTTT  997

seq1  TCTGGGGCAGTCCCTCAGGTAGCCATCTA  1026
      |||||| |||| | |||||||||||||||
seq2  TCTGGGTCAGTTCTTCAGGTAGCCATCTA  1026

seq1: chr16_97912160_97913286
seq2: B6Ng01-029D20.g_65_1180 (reverse)

seq1  TGATCCAAAGTAAACCTCTCCTCTTTCAAGTCACTTCTGTCAACTATTTG  50
      ||||||||||||||| ||||    ||||| | |||   |||||||| || 
seq2  TGATCCAAAGTAAACTTCTC----TTCAA-TTACT--CGTCAACTA-TTA  42

seq1  GTCACAGAGAAAAGAGAA-GCAAAGTAATAAGGGGACATCCCTCTGTGGG  99
      |||||||| ||||||||| |||||||||||||||  ||| |||| ||| |
seq2  GTCACAGAAAAAAGAGAAGGCAAAGTAATAAGGGACCAT-CCTCCGTGAG  91

seq1  TTCCCTTGATAAGAGAAAGGCT-CAGATTGGGGTGAAATGGCCAAGCAGG  148
       | || |||||||||||| ||| |||||| | || ||||| |||||||| 
seq2  ATTCCCTGATAAGAGAAAAGCTCCAGATTAGAGT-AAATGACCAAGCAGA  140

seq1  ATTTTCTTGAATCTTCTTTTAGGTAAGTAATAGACAGAGAAGGAAAATGA  198
      ||||   ||||||||| ||||||||||||||||||| ||||| |||||||
seq2  ATTT--CTGAATCTTC-TTTAGGTAAGTAATAGACA-AGAAGAAAAATGA  186

seq1  AGTGTCCCAGAGGTCCTGTAGGAATGGGTGGGG-CCAGTGTCAGAGACAT  247
      ||||||||||| ||||||||||||||| ||||| ||||||||||||||||
seq2  AGTGTCCCAGAAGTCCTGTAGGAATGGATGGGGACCAGTGTCAGAGACAT  236

seq1  GCCACCAAGAACAAGAGGGTCCAATCCTATCAGTTTCTTGCGAGAGCTAG  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCACCAAGAACAAGAGAGTCCAATCCTATCAGTTTCTTGCGAGAGCTAG  286

seq1  GTTTAATCATCCCAGGGCTTTAAGGGCAAGAAGCCCTTTGGTTCAGTTTC  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTTAATCATCCCAAGGCTTTAAGGGCAAGAAGCCCTTTGGTTCAGTTTC  336

seq1  CTGGGACTGCTCAGGCAGTACCTATAGTCACATGACTATAGGTGACCAGT  397
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGGACTGCTCAGGCAGTACCTATAGTCACATAACTATAGGTGACCAGT  386

seq1  AGTCACATGCTTCATGGGAACATCTAGTATCTGGCATGGAAATCATGTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGCTTCATGGGAACATCTAGTATCTGGCATGGAAATCATGTTT  436

seq1  GTCCCACCTTTTTTTTTTTTTTCATACTCACAAACTGATCCCAAGTACTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCTTTTTTTTTTTTTTCATACTCACAAACTGATCCCAAGTACTA  486

seq1  AACATTAAACATAAGAAGAAGGACATGTTCTGTGAGAAATACCTAAGGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAACATAAGAAGAAGGACATGTTCTGTGAGAAATACCTAAGGTT  536

seq1  TAGGGCTTTCCTGCCTGCAGGCAACTACATGAACATTACCATCAGCAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTTCCTGCCTGCAGGCAACTACATGAACATTACCATCAGCAATG  586

seq1  ACTCTGAAGGCACAAATCCCTTTAGGAGTTGCAAAGGAGCCTCAAGGATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGGCACAAATCCCTTTAGGAGTTGCAAAGGAGCCTCAAGGATT  636

seq1  CACCCTCATGATCTGGGATACATGTGCAACAGACCTGCCAGGTGCTCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCATGATCTGGGATACATGTGCAACAGACCTGCCAGGTGCTCCTG  686

seq1  TAACTGGCTAGACTTTCCGAAATGATCAGACTGAGCAGGATCAGTTCCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCTAGACTTTCCGAAATGATCAGACTGAGCAGGATCAGTTCCAC  736

seq1  CAAAAGAAAAAGAGTGAAGAGCTATAGAGCTCTCTTAATATAGGTGGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAAAGAGTGAAGAGCTATAGAGCTCTCTTAATATAGGTGGGCA  786

seq1  GCCCTGCTGCACAGGGAGTCTCTGATACAGGGGTGTGGGAGGAAGAGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGCACAGGGAGTCTCTGATACAGGGGTGTGGGAGGAAGAGGAG  836

seq1  GTAGCAGAGAAGGACTAGGATGGGATGGGACAGAAGGGCAGGGTAGTGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGAAGGACTAGGATGGGATGGGACAGAAGGGCAGGGTAGTGTC  886

seq1  AGTGTGAGATTCTTTACCACACAAAGATGGTTTAAGTTTCTTTGTTTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGATTCTTTACCACACAAAGATGGTTTAAGTTTCTTTGTTTTCT  936

seq1  AAGTTTTCCTATCACGAAGTGTATTAAGTTTCACAGCATAGCATTTCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCCTATCACGAAGTGTATTAAGTTTCACAGCATAGCATTTCATT  986

seq1  CCCCTGAAGTTCAGAAATTTGTTCTACAAAATCGAGTTATTTTGTTCATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAGTTCAGAAATTTGTTCTACAAAATCGAGTTATTTTGTTCATA  1036

seq1  ATGCTAGGAATTTTCATATCATTGTCAGGGGAGTGTAACTTGCTTACTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGAATTTTCATATCATTGTCAGGGGAGTGTAACTTGCTTACTGT  1086

seq1  TGGAACTAAAGGCTTTGAGCTACTGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  TGGAACTAAAGGCTTTGAGCTACTGAATTC  1116