BAC Information

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BAC

Clone NameB6Ng01-030A08
Chromosome16 (Build37)
Map Location 90,528,464 - 90,664,766
singlet/doubletdoublet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A08.bB6Ng01-030A08.g
ACCDH860049DH860050
length470994
definitionDH860049|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A08, 5' end.DH860050|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,664,291 - 90,664,766)(90,528,464 - 90,529,460)
sequence
tgtccatttctaggagaggcatctcaagggttaaagagctaggaagccag
cagccggaggcatgccaggacgctaattagactccttttatatatatata
tatatatatatatatatatatatatatatatatatttagtttgctataaa
taaatgcgcagcacctgttcactagacagaactgcttttaatctcttctc
gttctctttcttggctaggcagcagcagacatgttgtgccggatgagcaa
tagacttaaagccaaataaaatagccatttctctggaactggaagcacaa
cgggctgaaaacaagtgtagctcaagccatgcaggaagcactggtggaga
acacagcgctggtgtccagcgttcacctcccggagagcattgcaagtctg
ggctgttttccatcttcttgccttgaagctccaatacatctctgaaatct
acttcccacccccaggatga
gaattcagagccaccatgaggggcccaagcagatagatgtctccctaaga
gagtgggatccagtgtccttccaggagaactaagtgagacttggtgactc
tggacagatctacatccttaggtttccaggcctctcttccactccctggc
tgatatctttcggcaattgcaagttcttagtttggtgaaaagcagaaaac
caacgtttccaacaatgtttatggtctgattgtattctttaaacatcttc
attcttaggtcaggaaaacattttatagaaccattgccttattgatccca
tttagatgacaatggacagggagttgttttctgagtatggtctgcggtgc
cggcaagagaaacactttactgtatgaagagtcccttggcccagactttg
tcttaatctgtttttccattgctataacaggacacacaccctggagtcct
tcatcaagaggagagggcttttcttggctcatggttccggggtcagaaga
tccagaatctggcagctgtggctggtaagggtcttgagctgcatcaactc
acaaagtagagacgtgggcttatctgcaagaggtaaacccagagaaggac
attgctttgtcacagtgcatcccatggaatctgtccagccccaggagact
tcacccaggcttcacaaatcgaccttaaaagtggaatcttttctgaaagg
cccctgcctcccaaccctatcacaatggcaatcgatgtcagaaagaccaa
atccttttcaaacaatcgttgaacggtctcttgaatgttgctctgagtgg
aattctttcacacaaattcgttgtatacatgcatgtctgtgcatacaatg
gtctgcttgggctctccattctgtctcactggtccgtctgttgtgtgtct
cagctgctgtggctctccagtctatgttgcctgcagagtgagcccctgcc
ttcagagctctttttgtgttcagctatacttaggactgcagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90664291_90664766
seq2: B6Ng01-030A08.b_47_522 (reverse)

seq1  TCATCCTGGGGGTGGGAAGTAGATTTCAGAGATGTATTGGAGCTTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGGGGTGGGAAGTAGATTTCAGAGATGTATTGGAGCTTCAAGG  50

seq1  CAAGAAGATGGAAAACAGCCCAGACTTGCACTGCTCTCCGGGAGGTGAAC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGAAGATGGAAAACAGCCCAGACTTGCAATGCTCTCCGGGAGGTGAAC  100

seq1  GCTGGACACCAGCGCTGTGTTCTCCACCAGTGCTTCCTGCATGGCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACACCAGCGCTGTGTTCTCCACCAGTGCTTCCTGCATGGCTTGAG  150

seq1  CTACACTTGTTTTCAGCCCGTTGTGCTTCCAGTTCCAGAGAAATGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTGTTTTCAGCCCGTTGTGCTTCCAGTTCCAGAGAAATGGCTAT  200

seq1  TTTATTTGGCTTTAAGTCTATTGCTCATGCGGCACAACATGTCTGCTGCT  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTATTTGGCTTTAAGTCTATTGCTCATCCGGCACAACATGTCTGCTGCT  250

seq1  GCCTAGCCAAGAAAGAGAACGAGAAGAGATTAAAAGCAGTTCTGTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCAAGAAAGAGAACGAGAAGAGATTAAAAGCAGTTCTGTCTAGT  300

seq1  GAACAGGTGCTGCGCATTATCTAATAGCAAACTAAATATATATATATATA  350
      ||||||||||||||||||   | |||||||||||||||||||||||||||
seq2  GAACAGGTGCTGCGCATTTATTTATAGCAAACTAAATATATATATATATA  350

seq1  TATATATATATATATATATATATATATATATAAAAGGAGTCTAATTAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATAAAAGGAGTCTAATTAGCG  400

seq1  TCCTGGCATGCCTCCGGCTGCTGGCTTCCTAGCTCTTTAACCCTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATGCCTCCGGCTGCTGGCTTCCTAGCTCTTTAACCCTTGAGAT  450

seq1  GCCTCTCCTAGAAATGGACAGAATTC  476
      ||||||||||||||||||||||||||
seq2  GCCTCTCCTAGAAATGGACAGAATTC  476

seq1: chr16_90528464_90529460
seq2: B6Ng01-030A08.g_68_1061

seq1  GAATTCAGAGCCACCATGAGGGGCCCAAGCAGATAGATGTCTCCCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCACCATGAGGGGCCCAAGCAGATAGATGTCTCCCTAAGA  50

seq1  GAGTGGGATCCAGTGTCCTTCCAGGAGAACTAAGTGAGACTTGGTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGATCCAGTGTCCTTCCAGGAGAACTAAGTGAGACTTGGTGACTC  100

seq1  TGGACAGATCTACATCCTTAGGTTTCCAGGCCTCTCTTCCACTCCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGATCTACATCCTTAGGTTTCCAGGCCTCTCTTCCACTCCCTGGC  150

seq1  TGATATCTTTCGGCAATTGCAAGTTCTTAGTTTGGTGAAAAGCAGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTTTCGGCAATTGCAAGTTCTTAGTTTGGTGAAAAGCAGAAAAC  200

seq1  CAACGTTTCCAACAATGTTTATGGTCTGATTGTATTCTTTAAACATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTTCCAACAATGTTTATGGTCTGATTGTATTCTTTAAACATCTTC  250

seq1  ATTCTTAGGTCAGGAAAACATTTTATAGAACCATTGCCTTATTGATCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGGTCAGGAAAACATTTTATAGAACCATTGCCTTATTGATCCCA  300

seq1  TTTAGATGACAATGGACAGGGAGTTGTTTTCTGAGTATGGTCTGCGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGACAATGGACAGGGAGTTGTTTTCTGAGTATGGTCTGCGGTGC  350

seq1  CGGCAAGAGAAACACTTTACTGTATGAAGAGTCCCTTGGCCCAGACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGAGAAACACTTTACTGTATGAAGAGTCCCTTGGCCCAGACTTTG  400

seq1  TCTTAATCTGTTTTTCCATTGCTATAACAGGACACACACCCTGGAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCTGTTTTTCCATTGCTATAACAGGACACACACCCTGGAGTCCT  450

seq1  TCATCAAGAGGAGAGGGCTTTTCTTGGCTCATGGTTCCGGGGTCAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGAGGAGAGGGCTTTTCTTGGCTCATGGTTCCGGGGTCAGAAGA  500

seq1  TCCAGAATCTGGCAGCTGTGGCTGGTAAGGGTCTTGAGCTGCATCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATCTGGCAGCTGTGGCTGGTAAGGGTCTTGAGCTGCATCAACTC  550

seq1  ACAAAGTAGAGACGTGGGCTTATCTGCAAGAGGTAAACCCAGAGAAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAGAGACGTGGGCTTATCTGCAAGAGGTAAACCCAGAGAAGGAC  600

seq1  ATTGCTTTGTCACAGTGCATCCCATGGAATCTGTCCAGCCCCAGGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGTCACAGTGCATCCCATGGAATCTGTCCAGCCCCAGGAGACT  650

seq1  TCACCCAGGCTTCACAAATCGACCTTAAAAGTGGAATCTTTTCTGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGGCTTCACAAATCGACCTTAAAAGTGGAATCTTTTCTGAAAGG  700

seq1  CCCCTGCCTCCCAACCCTATCACAATGGCAATCGATGTCAGAAAGACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCCAACCCTATCACAATGGCAATCGATGTCAGAAAGACCAA  750

seq1  ATCCTTTTCAAACAATCGTTGAACGGTCTCTTGAATGTTGCTCTGAGGTG  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCCTTTTCAAACAATCGTTGAACGGTCTCTTGAATGTTGCTCTGA-GTG  799

seq1  GAAATCTTTCACACAAA-TCGTGTTATACATGCATGTCTGTGCATAC-AT  848
      ||| ||||||||||||| ||||  ||||||||||||||||||||||| ||
seq2  GAATTCTTTCACACAAATTCGTTGTATACATGCATGTCTGTGCATACAAT  849

seq1  GGTCTGCTTGGGCTCTCCATTCTGTCTCACTGGTCCGTCTGTTGTTGTGT  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTCTGCTTGGGCTCTCCATTCTGTCTCACTGGTCCGTCTGTTG-TGTGT  898

seq1  CTCAGCTGCTGTGGCTCTCCAAGTCTATGTGGCCTGCAGAGTGAGCCCCT  948
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  CTCAGCTGCTGTGGCTCTCC-AGTCTATGTTGCCTGCAGAGTGAGCCCCT  947

seq1  GCCTTCAGAGCTCTTTTTGTGTCTCAGCTATACTTTAGAACTGCAGTGC  997
      |||||||||||||||||||||| |||||||||| |||| ||||||||||
seq2  GCCTTCAGAGCTCTTTTTGTGT-TCAGCTATAC-TTAGGACTGCAGTGC  994