BAC Information

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BAC

Clone NameB6Ng01-030J12
Chromosome16 (Build37)
Map Location 53,045,531 - 53,046,693
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam, LOC100043430, LOC667895
Downstream geneLOC433027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J12.bB6Ng01-030J12.g
ACCDH860451DH860452
length1,2341,129
definitionDH860451|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J12, 5' end.DH860452|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctacacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctacacaaagaataaataggctgagaaagaaattag
ggaaacaacagccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagttctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaaagcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaatagaacaatggaatagaattgaagac
ccagaaatgaacccacacacatatggtcacttgatcttcgacaagggagc
taaaaccatccagtggagaagacagcatttcacaattggtgctggcacaa
ctggtgtatcatgtagaagattcgaatcgatccatacttatctcttgtac
taagtcaaatctagtggatcagaactcaataaaccaagaaattgaacctc
atagagaaagtggagaaagctgagatgggccagagaaatctgaaagaacg
caagcttgtactgtagatcggaatgcaatggacttatgaactcaagttcc
gcagccagaccgtcatagacaaagaccccacgatgagactttcattctaa
tcgatgtactaatccgatttagactcagagggat
gaattcaaatttcaatcattagatttctagaggtatgtttagagatgtgt
gtattcagatcctcccagacatgtgaaagacctttaaatgtttaatggac
acagagaaacttcagtgaactctgcctttttttctaaattaaacagggat
atatgtgaatatgaaatttgcattgtcatattttaaggtaatttattaat
atacctagaattgttgctttttaaattcagtttttcttgttaaattgttt
aaatgaattagaacaattctcaaacaatttgtttgatgtattaaaacgta
aggacttgtcaccaggatttttctctttataattatgcaaattatagtgt
catttatatcaattgttttgttttaaacaaatatctgaaaataatatcac
ttctgtcttttacacccctgatcatttatatggaagtcttcttttggaat
gtttaaatttgccagagaaaacaggctaaaccactgctacaataaattat
cttgctgaaaaagagtacatgagagcatatatcatgttcctattaaagta
gaaatctcagttcatctagccacccaagaagttttaatacaattgatttc
ctaaatttattatatctgtcagagaggttttatcaggcatgttcgcatta
taaatacacaattttccttaccaaatataaagaaatttgtttaaatgata
gatctcttataattcatctgaataaaaacatttgtatatctaaatagaag
aaaatattttctctgttacacaatagaatgaggaagcatatatcccctta
ttctgctcagttgcagaaattagcaaccatatttatgacacttgctgaga
tacactgccttgggcattctaagatccatcctagttacatcatgtgttat
tgatttctcttgtgtctatacactgaatgtatactcaggaccatgctcag
taacatcaccaggaaatgtgtgattacagatttcatgaggatggttggca
agcattttatttcactggttttatgcatgaggcaactccccctcctaagg
tttcataagcaggtgacccattaaacctgtggccttccctacactcttgg
ctctctggggagaccaaagaacaagctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53045531_53046693
seq2: B6Ng01-030J12.g_68_1196

seq1  GAATTCAAATTTCAATCATTAGATTTCTAGAGGTATGTTTAGAGATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTCAATCATTAGATTTCTAGAGGTATGTTTAGAGATGTGT  50

seq1  GTATTCAGATCCTCCCAGACATGTGAAAGACCTTTAAATGTTTAATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGATCCTCCCAGACATGTGAAAGACCTTTAAATGTTTAATGGAC  100

seq1  ACAGAGAAACTTCAGTGAACTCTGCCTTTTTTTCTAAATTAAACAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACTTCAGTGAACTCTGCCTTTTTTTCTAAATTAAACAGGGAT  150

seq1  ATATGTGAATATGAAATTTGCATTGTCATATTTTAAGGTAATTTATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGAATATGAAATTTGCATTGTCATATTTTAAGGTAATTTATTAAT  200

seq1  ATACCTAGAATTGTTGCTTTTTAAATTCAGTTTTTCTTGTTAAATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGAATTGTTGCTTTTTAAATTCAGTTTTTCTTGTTAAATTGTTT  250

seq1  AAATGAATTAGAACAATTCTCAAACAATTTGTTTGATGTATTAAAACGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTAGAACAATTCTCAAACAATTTGTTTGATGTATTAAAACGTA  300

seq1  AGGACTTGTCACCAGGATTTTTCTCTTTATAATTATGCAAATTATAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTCACCAGGATTTTTCTCTTTATAATTATGCAAATTATAGTGT  350

seq1  CATTTATATCAATTGTTTTGTTTTAAACAAATATCTGAAAATAATATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATCAATTGTTTTGTTTTAAACAAATATCTGAAAATAATATCAC  400

seq1  TTCTGTCTTTTACACCCCTGATCATTTATATGGAAGTCTTCTTTTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTTTACACCCCTGATCATTTATATGGAAGTCTTCTTTTGGAAT  450

seq1  GTTTAAATTTGCCAGAGAAAACAGGCTAAACCACTGCTACAATAAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTTGCCAGAGAAAACAGGCTAAACCACTGCTACAATAAATTAT  500

seq1  CTTGCTGAAAAAGAGTACATGAGAGCATATATCATGTTCCTATTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAAAAAGAGTACATGAGAGCATATATCATGTTCCTATTAAAGTA  550

seq1  GAAATCTCAGTTCATCTAGCCACCCAAGAAGTTTTAATACAATTTATTTC  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAATCTCAGTTCATCTAGCCACCCAAGAAGTTTTAATACAATTGATTTC  600

seq1  CTAAATTTATTATATCTGTCAGAGAGGTTTTATCAGGCATGTTCGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTATTATATCTGTCAGAGAGGTTTTATCAGGCATGTTCGCATTA  650

seq1  TAAATACACAATTTTCCTTACCAAATATAAAGAAATTTGTTTAAATGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACACAATTTTCCTTACCAAATATAAAGAAATTTGTTTAAATGATA  700

seq1  GATCTCTTATAATTCATCTGAATAAAAACATTTGTATATCTAAATAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTATAATTCATCTGAATAAAAACATTTGTATATCTAAATAGAAG  750

seq1  AAAATATTTTCTCTGTTACACAATAGAATGAGGAAGCATATATCCCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTCTCTGTTACACAATAGAATGAGGAAGCATATATCCCCTTA  800

seq1  TTCTGCTCAGTTGCAGAAATTAGCAACCATATTTATGACACTTGCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCAGTTGCAGAAATTAGCAACCATATTTATGACACTTGCTGAGA  850

seq1  TACACTGCCTTGGGCATTCTAAGATCCATCCTAGTTACATCATGTGTTTA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACACTGCCTTGGGCATTCTAAGATCCATCCTAGTTACATCATGTG-TTA  899

seq1  TTGATTTCTCTTGTGTCATATACACTGAATGTATACTCAGGAACCAATGC  950
      ||||||||||||||||| ||||||||||||||||||||||||  | ||||
seq2  TTGATTTCTCTTGTGTC-TATACACTGAATGTATACTCAGGA--CCATGC  946

seq1  TCAGTAACCATACACCAGGAAATGGTGTTGATTACAGGATTTCAATGAAG  1000
      ||||||| ||| ||||||||||| ||| |||||||| |||||| ||| ||
seq2  TCAGTAA-CAT-CACCAGGAAAT-GTG-TGATTACA-GATTTC-ATG-AG  989

seq1  GATGGTTGGCAAGCATTTTATTTCACTGGTTTTTATGCCATGAGGGCAAA  1050
      ||||||||||||||||||||||||||||| ||||||| |||||||   ||
seq2  GATGGTTGGCAAGCATTTTATTTCACTGG-TTTTATG-CATGAGG--CAA  1035

seq1  CTCCCCCTCTAAAGGCTCTCATAAAGCAAGGTTGACCCACATAAAAACCT  1100
      |||||||||  |||| | |||| |||||  | |||||  ||| |||  | 
seq2  CTCCCCCTCCTAAGG-TTTCAT-AAGCA--GGTGACC--CATTAAA--CC  1077

seq1  TGTGGCCTTCCCCTACACTTCTTTGGTCTTCATCTGGGGAAGACACAAAA  1150
      ||||||||| |||||||| |||| | ||    ||||||   || || |||
seq2  TGTGGCCTT-CCCTACAC-TCTTGGCTC----TCTGGG---GAGACCAAA  1118

seq1  GAACAAAAGCTAC  1163
      ||||  |||||||
seq2  GAAC--AAGCTAC  1129