BAC Information

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BAC

Clone NameB6Ng01-031E13
Chromosome16 (Build37)
Map Location 62,016,235 - 62,160,131
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E13.bB6Ng01-031E13.g
ACCDH860947DH860948
length1,0771,140
definitionDH860947|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E13, 5' end.DH860948|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,159,028 - 62,160,131)(62,016,235 - 62,017,426)
sequence
gaattctctgttctagaatgaacaagaatggacaatttattagagttctg
tgttcccttcatcctggcctgtgctttaaaaatagtgcataaaactaaag
agagtttttgcaagatgaaacactgtgaaatacttagtggttaagaaata
cttaaaagtattcaccatgccaagccaacagaaacatgaaaattaaaatc
acttaagattttattttaccccaatcagaataaccaagattaatgaaaca
aatatgaaccccttcaagatacaagaactttaatttgcctgccatgaaga
aaggaaagtcttcaggccgcagtatactttacttccatcgtatgtatcta
gctttaattagttaaataattgattggtcctagcaaaaattcttaactgt
tttaacatgattgactatttggatcatatgaatcatgagatattagcaac
atgaagaaaatctatattctgttttaaatataaagaacattagggtcatt
gaggaagtctgtttagtttaaaaatggcaaatcattttggaatttggtga
agctaaaaggcttggccaaatgccaagtgccatgaactctccagtctcca
tttacgacaagattttcaccacaatatatacttacacaatagtaatttta
ccaatcctttcaaaatttctttaaaaatggttttcttattttatgtattc
acatcccaaatgtcatcccctttccttgtgcccccttcccaagttcttta
tctcataccccctcccttttgcttctgagagggtcctcccccacccacct
acgtagtcccacctcactttcatcagcatcccccttccctggggcatcaa
atttctacagtattaggtcatcttctcctactgatgccagacagcagtcc
tctgctacatgtgtgatgggtgccatggaagagctgagctctttgttgtg
gctagtctgtgaagctctaaggttctgattctgatacagttatctcctat
gggttgcatccactttagagatacagtcctccctaactctccatagggtc
ctgactcagtccatggtggtgtaagta
gaattcatagaaacttcaggaagaaaaataacagatatcaaaatattggc
atgttgctaaggggttaatattggtctggccacttgattgtagtcatatt
tatattacatcagcaaatgagttacatgtaccaagatactgattttgctg
tcattttaggaaataaacatgcagtctatcagtatctccacagaaacatg
aatacattaaagaaaattgtaattctaaatatagaaacagataaagccca
ggttttttgttgttgttgttgttgtcttattatagttttttattttttat
ttttttttaagattaaggctctgggaccaaagtagtctgttaacacagga
aactatgaataggagtactgagatataatatttaaattgtaaacaattta
ataatttttatcaaaaccagaaagtatatattaaacatataactatgtat
ggatgatttttaaacttcatattgttattttagggcactgataaaatatt
tcctttgtgtctctgtcctaaaaactgtcacacttattctgatgtcacat
tttagttcagaacatctttcttgtttcagtgcttatgtttcgtttaaagc
ctattgtaaatatctttattaacaccctacttaaaatatttttgtcaata
tctgttgtgaaatatagtattatgtaagttgctcttattgaaatatctcc
tactttcaattaaggcaacttgctgtatataatatttgtataatatttta
ataaattacttactagcctgttagtgaattgaaaaaatacattttgtgtg
aaaaagacaaatcatttgtttgaattcagcatgtacctgctgagttgtct
acaatatgccatgtgtcatgaatatggcagtgttagtttcatcaatatac
ttaaacatattcactatgatttcaattttatattaaagtttatatgcaat
tacttatgcagaggtattctttctgaaatttgaaagtttttggatgccct
tgatgattccgtgaatccttttgcatgttttaaagtagacttaggacaaa
aagcttgtgcagggacatgttgtaaaggcactgactctatatgttgtact
aaacttttaggccaacccaataattatgccaatggaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62159028_62160131
seq2: B6Ng01-031E13.b_43_1119 (reverse)

seq1  TACTTACAACCACCCATTGGACTGAGGTCAGGGACCCCTATGGAAGAGTT  50
      ||||||| ||||||   |||||||| ||||||   |||||||| ||||||
seq2  TACTTAC-ACCACC--ATGGACTGA-GTCAGG--ACCCTATGG-AGAGTT  43

seq1  AGGGGAAGGACTGTATCTGCTAAAGTGGATGGCAACCCCATAGGAAGAAT  100
      ||||  |||||||||||| ||||||||||| |||| |||||||| |||  
seq2  AGGG--AGGACTGTATCT-CTAAAGTGGAT-GCAA-CCCATAGG-AGA--  85

seq1  AAACTGTATCAAGAAATCCAGAACCCTTAGAGCTTTCACAGACTAAGCCA  150
       ||||||||| ||||   ||||| ||||||||| |||||||||| |||||
seq2  TAACTGTATC-AGAA--TCAGAA-CCTTAGAGC-TTCACAGACT-AGCCA  129

seq1  CCAACAAAAGAGCTCAGGCTCTTCCATGGCACCCATCACACATGTAGCAG  200
       |||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  -CAAC-AAAGAGCTCA-GCTCTTCCATGGCACCCATCACACATGTAGCAG  176

seq1  AGGACTGCCTTGTCTGGCATCAGTAGGAGAAGATGAACCTAATACTGTAG  250
      ||||||||  ||||||||||||||||||||||||| ||||||||||||||
seq2  AGGACTGC--TGTCTGGCATCAGTAGGAGAAGATG-ACCTAATACTGTAG  223

seq1  AAATTTGATGCCCCAGGGAAGGGGGATGCTGATGAAAGTGAGGTGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATGCCCCAGGGAAGGGGGATGCTGATGAAAGTGAGGTGGGACT  273

seq1  ACGTAGGTGGGTGGGGGAGGACCCTCTCAGAAGCAAAAGGGAGGGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGTGGGTGGGGGAGGACCCTCTCAGAAGCAAAAGGGAGGGGGTAT  323

seq1  GAGATAAAGAACTTGGGAAGGGGGCACAAGGAAAGGGGATGACATTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGAACTTGGGAAGGGGGCACAAGGAAAGGGGATGACATTTGGG  373

seq1  ATGTGAATACATAAAATAAGAAAACCATTTTTAAAGAAATTTTGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATACATAAAATAAGAAAACCATTTTTAAAGAAATTTTGAAAGGA  423

seq1  TTGGTAAAATTACTATTGTGTAAGTATATATTGTGGTGAAAATCTTGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAATTACTATTGTGTAAGTATATATTGTGGTGAAAATCTTGTCG  473

seq1  TAAATGGAGACTGGAGAGTTCATGGCACTTGGCATTTGGCCAAGCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGACTGGAGAGTTCATGGCACTTGGCATTTGGCCAAGCCTTTT  523

seq1  AGCTTCACCAAATTCCAAAATGATTTGCCATTTTTAAACTAAACAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACCAAATTCCAAAATGATTTGCCATTTTTAAACTAAACAGACTT  573

seq1  CCTCAATGACCCTAATGTTCTTTATATTTAAAACAGAATATAGATTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGACCCTAATGTTCTTTATATTTAAAACAGAATATAGATTTTCT  623

seq1  TCATGTTGCTAATATCTCATGATTCATATGATCCAAATAGTCAATCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGCTAATATCTCATGATTCATATGATCCAAATAGTCAATCATGT  673

seq1  TAAAACAGTTAAGAATTTTTGCTAGGACCAATCAATTATTTAACTAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTTAAGAATTTTTGCTAGGACCAATCAATTATTTAACTAATTA  723

seq1  AAGCTAGATACATACGATGGAAGTAAAGTATACTGCGGCCTGAAGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATACATACGATGGAAGTAAAGTATACTGCGGCCTGAAGACTTT  773

seq1  CCTTTCTTCATGGCAGGCAAATTAAAGTTCTTGTATCTTGAAGGGGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCATGGCAGGCAAATTAAAGTTCTTGTATCTTGAAGGGGTTCA  823

seq1  TATTTGTTTCATTAATCTTGGTTATTCTGATTGGGGTAAAATAAAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTCATTAATCTTGGTTATTCTGATTGGGGTAAAATAAAATCTT  873

seq1  AAGTGATTTTAATTTTCATGTTTCTGTTGGCTTGGCATGGTGAATACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTTAATTTTCATGTTTCTGTTGGCTTGGCATGGTGAATACTTT  923

seq1  TAAGTATTTCTTAACCACTAAGTATTTCACAGTGTTTCATCTTGCAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTCTTAACCACTAAGTATTTCACAGTGTTTCATCTTGCAAAAA  973

seq1  CTCTCTTTAGTTTTATGCACTATTTTTAAAGCACAGGCCAGGATGAAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTAGTTTTATGCACTATTTTTAAAGCACAGGCCAGGATGAAGGG  1023

seq1  AACACAGAACTCTAATAAATTGTCCATTCTTGTTCATTCTAGAACAGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAACTCTAATAAATTGTCCATTCTTGTTCATTCTAGAACAGAGA  1073

seq1  ATTC  1104
      ||||
seq2  ATTC  1077

seq1: chr16_62016235_62017426
seq2: B6Ng01-031E13.g_66_1205

seq1  GAATTCATAGAAACTTCAGGAAGAAAAATAACAGATATCAAAATATTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAACTTCAGGAAGAAAAATAACAGATATCAAAATATTGGC  50

seq1  ATGTTGCTAAGGGGTTAATATTGGTCTGGCCACTTGATTGTAGTCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTAAGGGGTTAATATTGGTCTGGCCACTTGATTGTAGTCATATT  100

seq1  TATATTACATCAGCAAATGAGTTACATGTACCAAGATACTGATTTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACATCAGCAAATGAGTTACATGTACCAAGATACTGATTTTGCTG  150

seq1  TCATTTTAGGAAATAAACATGCAGTCTATCAGTATCTCCACAGAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGGAAATAAACATGCAGTCTATCAGTATCTCCACAGAAACATG  200

seq1  AATACATTAAAGAAAATTGTAATTCTAAATATAGAAACAGATAAAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTAAAGAAAATTGTAATTCTAAATATAGAAACAGATAAAGCCCA  250

seq1  GGTTTTTTGTTGTTGTTGTTGTTGTCTTATTATAGTTTTTTATTTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTGTTGTTGTTGTTGTCTTATTATAGTTTTTTATTTTTTAT  300

seq1  TTTTTTTTAAGATTAAGGCTCTGGGACCAAAGTAGTCTGTTAACACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTAAGGCTCTGGGACCAAAGTAGTCTGTTAACACAGGA  350

seq1  AACTATGAATAGGAGTACTGAGATATAATATTTAAATTGTAAACAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAATAGGAGTACTGAGATATAATATTTAAATTGTAAACAATTTA  400

seq1  ATAATTTTTATCAAAACCAGAAAGTATATATTAAACATATAACTATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTATCAAAACCAGAAAGTATATATTAAACATATAACTATGTAT  450

seq1  GGATGATTTTTAAACTTCATATTGTTATTTTAGGGCACTGATAAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTTTAAACTTCATATTGTTATTTTAGGGCACTGATAAAATATT  500

seq1  TCCTTTGTGTCTCTGTCCTAAAAACTGTCACACTTATTCTGATGTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGTCTCTGTCCTAAAAACTGTCACACTTATTCTGATGTCACAT  550

seq1  TTTAGTTCAGAACATCTTTCTTGTTTCAGTGCTTATGTTTCGTTTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCAGAACATCTTTCTTGTTTCAGTGCTTATGTTTCGTTTAAAGC  600

seq1  CTATTGTAAATATCTTTATTAACACCCTACTTAAAATATTTTTGTCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAAATATCTTTATTAACACCCTACTTAAAATATTTTTGTCAATA  650

seq1  TCTGTTGTGAAATATAGTATTATGTAAGTTGCTCTTATTGAAATATCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTGAAATATAGTATTATGTAAGTTGCTCTTATTGAAATATCTCC  700

seq1  TACTTTCAATTAAGGCAACTTGCTGTATATAATATTTGTATAATATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAATTAAGGCAACTTGCTGTATATAATATTTGTATAATATTTTA  750

seq1  ATAAATTACTTACTAGCCTGTTAGTGAATTGAAAAAATACATTTTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTACTTACTAGCCTGTTAGTGAATTGAAAAAATACATTTTGTGTG  800

seq1  AAAAAGGACAAATCATTTGTTTGAATTCAGCATGTACCTGCTGAG-TGTC  849
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAA-GACAAATCATTTGTTTGAATTCAGCATGTACCTGCTGAGTTGTC  849

seq1  TACAATATGCCATGTGTCATGAATATTGCCAGTGTTAGTTTTCAATCAAT  899
      ||||||||||||||||||||||||| || ||||||||||||   ||||||
seq2  TACAATATGCCATGTGTCATGAATA-TGGCAGTGTTAGTTT--CATCAAT  896

seq1  ATACTTAAACATATTCACTATGAATTTCAAATTTTATATTTAAAGTTTTA  949
      |||||||||||||||||||||| ||||| ||||||||| |||||| ||||
seq2  ATACTTAAACATATTCACTATG-ATTTC-AATTTTATA-TTAAAG-TTTA  942

seq1  TATGCAATTACTTATGCAGAGGTATTTCTTTCTGAATATTTTGAATAGTT  999
      |||||||||||||||||||||||| ||||||||||  | |||||| ||  
seq2  TATGCAATTACTTATGCAGAGGTA-TTCTTTCTGA--AATTTGAA-AG--  986

seq1  TTTTTGGATTGCTCTTTTGAGTAGATTA-TCTGTGATTCACTTTTTAGCA  1048
      |||||||| ||| |||       ||| | || |||| || |||||  || 
seq2  TTTTTGGA-TGCCCTT-------GATGATTCCGTGAATC-CTTTT--GC-  1024

seq1  ATGTTTTATAACAGTTAAGACTTAAGGTACAAAAAAAGTCTATGTGCAGG  1098
      |||||||   | |||  |||||||  | |||||||    || |||||| |
seq2  ATGTTTT---AAAGT--AGACTTA--GGACAAAAA---GCT-TGTGCA-G  1062

seq1  GGACATGTTGTAAAATGGCAACATGACTTAATTACTGTTGAACTAAACTA  1148
      ||||||||||||||  ||||   |||||  ||   ||||| |||||||  
seq2  GGACATGTTGTAAA--GGCA--CTGACTCTAT--ATGTTGTACTAAAC--  1104

seq1  TTTAAGGCACAACCGCAAAATAAATTATATGCCATATGGAAAGC  1192
      ||| |||| |||||  | |||      ||||||| |||||||||
seq2  TTTTAGGC-CAACCCAATAAT------TATGCCA-ATGGAAAGC  1140