BAC Information

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BAC

Clone NameB6Ng01-031O22
Chromosome16 (Build37)
Map Location 58,422,858 - 58,570,186
singlet/doubletdoublet
Overlap geneDcbld2, St3gal6, LOC100043480
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
Downstream geneGm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O22.bB6Ng01-031O22.g
ACCDH861411DH861412
length1,1731,064
definitionDH861411|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O22, 5' end.DH861412|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,568,979 - 58,570,186)(58,422,858 - 58,423,942)
sequence
gaattctagcattgcagagaggcacaggcaagaggattggttgaggctgt
cagaccaacctagatacagactgagaatttgtttaaaatatatatatata
aatcaagcaatcaccaccaccaacaacaaaaagttctacatcaatatgga
catccatatcgctgacaaccaacttcagttaaaactagttggcactgacc
cctttccagtaaaattagtaaatgaccaaggtgtcatgttcttgcctgtg
agaaggataatcctggagctctacatgaactcttcagataagtttagtga
catttttttgtgtgtcaacttgccattagtttcttcacatttaccactta
ctgtatcatatgaaaattcttgtcatggctaagtcattaaccattgggga
accatgacaaatgatggacaatgtacccgttctttagatcaccctcacag
taagagtgtgcaattagcttatgtacaccacgtgtttaaggcagtcacac
gtgatccttagcattgtttccttctcctatctctggtcaaaacttcagct
tcttattaataacccccaaatttcagaatcttcccacccaatattccaaa
acattgtttagtctcctgcagtgtatgtgtttgtctaagatgtgctgcag
atactatttcttaatgtgaactgctcataggagctcgccctagcatctgc
taagcattttgtgtggcagtaagagtcatcacaagcaactcttttagtaa
ccctaaacaccctcccactggtctttttttcttgcatctaagatgcctct
tttcaaatataagaatctgtcttggagcaaccctaattaatgtgttccta
atggcgttattgtgaaaacccacggctacttcatttatttcctcaaaaat
acagtaggcacataaaacacttcagatatagcactcattcatttcctacc
agtttgtcactcgctggcaccatagtcacttttgtcataacagttgaaga
tagacagccccttccgctcgactcgagcccgggctaccttgccagcaagt
cttgcccacacccgcagggcccacgggactccgcacgggatcctagaacc
tctgttgatgaacacggccgccatcaatcgcgaaactgaactgcggtact
aggagcggctacgcttgatctgg
gaattccattacacttccaaggttctgcatatcaaaaatagcataatctg
aaatgtttaattatctatcaaagaattgtttcttaaatattggaacactt
ctaggaatcacaagctagtttcaaatgttagatactattttagggtagtt
gtttttgcctctggaagggaaaatgttaatgattgttgaaaagggacttg
tatttcagttgcttattttcacactggaggtttttatagccttatgattt
tactctaggttagatccaagagggacagagagaggcagcgagagggaatt
ttatggtagctttggaaggaaatggtatttttttattatgtaagagcctg
ttttactgtaaaatcagtgggtgtatttcacacccacatttacttcattc
tctccatattttttatattattaacccactatgcctagttctcgtgcatg
aatgaaatcaggggtcggaaataaagtatagtgttgactgaaagctaaac
tttatatgagaagtgtttgttcagaaagcagaatttatagtatccaactc
aaaagtagagcagcatgtagtactaacgtgggtcagagagtaaaacccca
gccgaagccactgctgcttcaggaccgtcaagggctgcgtggggactgtt
gctgcattgtggacatgaaactgccttttggtaaattgaagttactctat
tgctgtcagtgactgcatacttccttgccccacctcttaccagccctata
ctactaagctgttgtaacgtttaatttgttctagtgaatgaaatgcatag
tacattgttaggtaataacatgaggggaattctgttaccaccatccatgc
ctgtaatgattaagtaaacccacaagtgtcaattttaatgttttctatag
ttctatactattccaaagatgatatgagtagttcttttaaaggcgaaacc
catatttaaccggatgtatttatcattcttttaaaaagagacccactgat
ctcgtgttactgatgtgacattacctgggagcacagctgacctctaatgt
acatttgttatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_58568979_58570186
seq2: B6Ng01-031O22.b_48_1220 (reverse)

seq1  CCAGATCAAGCCCGGGTAGCCCGCTTCCCTATGTACCGCAGTCTCAGGTT  50
      |||||||||||    |||| |||||  |||| |||||||||| |||| ||
seq2  CCAGATCAAGC----GTAG-CCGCT--CCTA-GTACCGCAGT-TCAGTTT  41

seq1  CTGCGCGATTGGATTGGGCAGGCGCTGTGTTCCACTCACCAGAGGTCTTA  100
         ||||||| ||| | |     || ||||||   ||| |||||||  ||
seq2  ---CGCGATT-GATGGCG-----GCCGTGTTC--ATCAACAGAGGTTCTA  80

seq1  GGATCCCGTGCGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACT  150
      |||||||||||||||||||  |||||||| |||||||| |||||||||||
seq2  GGATCCCGTGCGGAGTCCC--GTGGGCCC-TGCGGGTG-TGGGCAAGACT  126

seq1  CTGCTGGCAAGGTAGCCCGGGGCTCGAGTCGAGCGGAAGGGGCTTGTCTA  200
       ||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  -TGCTGGCAAGGTAGCCC-GGGCTCGAGTCGAGCGGAAGGGGC-TGTCTA  173

seq1  TCTTCAACTTGTTATGACAAAAGTGACTATTGGTGCCAGCGAGTGACAAA  250
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTCAAC-TGTTATGACAAAAGTGACTA-TGGTGCCAGCGAGTGACAAA  221

seq1  CTGGTAGGAAATGAATGAGTGCTATTATTCTGAAGTGTTTTTATGTGCCC  300
      |||||||||||||||||||||||||   ||||||||| ||||||||||| 
seq2  CTGGTAGGAAATGAATGAGTGCTAT--ATCTGAAGTG-TTTTATGTGCC-  267

seq1  TTACTGTTATTTTTGAGGAAATAAATGAAGTAGCCGTGGGTTTTCACAAT  350
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TACTG-TATTTTTGAGGAAATAAATGAAGTAGCCGTGGGTTTTCACAAT  315

seq1  AACGCCATTAGGAACACATTAATTAGGGTTGCTCCAAGACAGATTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCATTAGGAACACATTAATTAGGGTTGCTCCAAGACAGATTCTTAT  365

seq1  ATTTGAAAAGAGGCATCTTAGATGCAAGAAAAAAAGACCAGTGGGAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAGAGGCATCTTAGATGCAAGAAAAAAAGACCAGTGGGAGGGT  415

seq1  GTTTAGGGTTACTAAAAGAGTTGCTTGTGATGACTCTTACTGCCACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGTTACTAAAAGAGTTGCTTGTGATGACTCTTACTGCCACACAA  465

seq1  AATGCTTAGCAGATGCTAGGGCGAGCTCCTATGAGCAGTTCACATTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAGCAGATGCTAGGGCGAGCTCCTATGAGCAGTTCACATTAAGA  515

seq1  AATAGTATCTGCAGCACATCTTAGACAAACACATACACTGCAGGAGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCTGCAGCACATCTTAGACAAACACATACACTGCAGGAGACTA  565

seq1  AACAATGTTTTGGAATATTGGGTGGGAAGATTCTGAAATTTGGGGGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTTTGGAATATTGGGTGGGAAGATTCTGAAATTTGGGGGTTAT  615

seq1  TAATAAGAAGCTGAAGTTTTGACCAGAGATAGGAGAAGGAAACAATGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAGCTGAAGTTTTGACCAGAGATAGGAGAAGGAAACAATGCTA  665

seq1  AGGATCACGTGTGACTGCCTTAAACACGTGGTGTACATAAGCTAATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACGTGTGACTGCCTTAAACACGTGGTGTACATAAGCTAATTGCA  715

seq1  CACTCTTACTGTGAGGGTGATCTAAAGAACGGGTACATTGTCCATCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACTGTGAGGGTGATCTAAAGAACGGGTACATTGTCCATCATTT  765

seq1  GTCATGGTTCCCCAATGGTTAATGACTTAGCCATGACAAGAATTTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTTCCCCAATGGTTAATGACTTAGCCATGACAAGAATTTTCATA  815

seq1  TGATACAGTAAGTGGTAAATGTGAAGAAACTAATGGCAAGTTGACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGTAAGTGGTAAATGTGAAGAAACTAATGGCAAGTTGACACACA  865

seq1  AAAAAATGTCACTAAACTTATCTGAAGAGTTCATGTAGAGCTCCAGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTCACTAAACTTATCTGAAGAGTTCATGTAGAGCTCCAGGATT  915

seq1  ATCCTTCTCACAGGCAAGAACATGACACCTTGGTCATTTACTAATTTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCACAGGCAAGAACATGACACCTTGGTCATTTACTAATTTTAC  965

seq1  TGGAAAGGGGTCAGTGCCAACTAGTTTTAACTGAAGTTGGTTGTCAGCGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGGTCAGTGCCAACTAGTTTTAACTGAAGTTGGTTGTCAGCGA  1015

seq1  TATGGATGTCCATATTGATGTAGAACTTTTTGTTGTTGGTGGTGGTGATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTCCATATTGATGTAGAACTTTTTGTTGTTGGTGGTGGTGATT  1065

seq1  GCTTGATTTATATATATATATTTTAAACAAATTCTCAGTCTGTATCTAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTATATATATATATTTTAAACAAATTCTCAGTCTGTATCTAGG  1115

seq1  TTGGTCTGACAGCCTCAACCAATCCTCTTGCCTGTGCCTCTCTGCAATGC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGACAGCCTCAACCAATCCTCTTGCCTGTGCCTCTCTGCAATGC  1165

seq1  TAGAATTC  1208
      ||||||||
seq2  TAGAATTC  1173

seq1: chr16_58422858_58423942
seq2: B6Ng01-031O22.g_69_1132

seq1  GAATTCCATTACACTTCCAAGGTTCTGCATATCAAAAATAGCATAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACACTTCCAAGGTTCTGCATATCAAAAATAGCATAATCTG  50

seq1  AAATGTTTAATTATCTATCAAAGAATTGTTTCTTAAATATTGGAACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTAATTATCTATCAAAGAATTGTTTCTTAAATATTGGAACACTT  100

seq1  CTAGGAATCACAAGCTAGTTTCAAATGTTAGATACTATTTTAGGGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATCACAAGCTAGTTTCAAATGTTAGATACTATTTTAGGGTAGTT  150

seq1  GTTTTTGCCTCTGGAAGGGAAAATGTTAATGATTGTTGAAAAGGGACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCCTCTGGAAGGGAAAATGTTAATGATTGTTGAAAAGGGACTTG  200

seq1  TATTTCAGTTGCTTATTTTCACACTGGAGGTTTTTATAGCCTTATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTTGCTTATTTTCACACTGGAGGTTTTTATAGCCTTATGATTT  250

seq1  TACTCTAGGTTAGATCCAAGAGGGACAGAGAGAGGCAGCGAGAGGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGGTTAGATCCAAGAGGGACAGAGAGAGGCAGCGAGAGGGAATT  300

seq1  TTATGGTAGCTTTGGAAGGAAATGGTATTTTTTTATTATGTAAGAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAGCTTTGGAAGGAAATGGTATTTTTTTATTATGTAAGAGCCTG  350

seq1  TTTTACTGTAAAATCAGTGGGTGTATTTCACACCCACATTTACTTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTAAAATCAGTGGGTGTATTTCACACCCACATTTACTTCATTC  400

seq1  TCTCCATATTTTTTATATTATTAACCCACTATGCCTAGTTCTCGTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATTTTTTATATTATTAACCCACTATGCCTAGTTCTCGTGCATG  450

seq1  AATGAAATCAGGGGTCGGAAATAAAGTATAGTGTTGACTGAAAGCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATCAGGGGTCGGAAATAAAGTATAGTGTTGACTGAAAGCTAAAC  500

seq1  TTTATATGAGAAGTGTTTGTTCAGAAAGCAGAATTTATAGTATCCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAGAAGTGTTTGTTCAGAAAGCAGAATTTATAGTATCCAACTC  550

seq1  AAAAGTAGAGCAGCATGTAGTACTAACGTGGGTCAGAGAGTAAAACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAGCAGCATGTAGTACTAACGTGGGTCAGAGAGTAAAACCCCA  600

seq1  GCCGAAGCCACTGCTGCTTCAGGACCGTCAAGGGCTGCGTGGGGACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGCCACTGCTGCTTCAGGACCGTCAAGGGCTGCGTGGGGACTGTT  650

seq1  GCTGCATTGTGGACATGAAACTGCCTTTTGGTAAATTGAAGTTACTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTGTGGACATGAAACTGCCTTTTGGTAAATTGAAGTTACTCTAT  700

seq1  TGCTGTCAGTGACTGCATACTTCCTTGCCCCACCTCTTACCAGCCCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGTGACTGCATACTTCCTTGCCCCACCTCTTACCAGCCCTATA  750

seq1  CTACTAAGCTGTTGTAACGTTTAATTTGTTCTAGTGAATGAAATGCATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGCTGTTGTAACGTTTAATTTGTTCTAGTGAATGAAATGCATAG  800

seq1  TACATTGTTAGGTAATAACATGAGGGGAATTCTGTTACCACCATCCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTTAGGTAATAACATGAGGGGAATTCTGTTACCACCATCCATGC  850

seq1  CTGTAATGATTAAGTTAAACCCACAAGTGTCAATTTTAATGTTTTCTATA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  CTGTAATGATTAAG-TAAACCCACAAGTGTCAATTTTAATGTTTTCTAT-  898

seq1  AGTTCTATACTATTCCAAAAGATGATAATGAGTAGTTCTTTTAAAGGCGG  950
      |||||||||||||||| ||||||||| ||||||||||||||||||||| |
seq2  AGTTCTATACTATTCC-AAAGATGAT-ATGAGTAGTTCTTTTAAAGGC-G  945

seq1  AAACCCCATTATTTAAAACGGGATGTATTTATCATCCTATTAAAAAGAGA  1000
      ||||||   |||||  ||| ||||||||||||||| || |||||||||||
seq2  AAACCC--ATATTT--AACCGGATGTATTTATCATTCTTTTAAAAAGAGA  991

seq1  CTCACTGAATCTCGTTGTTACTGAATGTTGAACATTACCTTGGGAGCAAC  1050
      | ||||| |||||| |||||||| ||||   |||||||| ||||||| ||
seq2  CCCACTG-ATCTCG-TGTTACTG-ATGT--GACATTACC-TGGGAGC-AC  1034

seq1  AGCTGAATCTTCTAAATGTACATTTTGTTAATGAC  1085
      ||||||  | ||| |||||||| |||||| |||||
seq2  AGCTGA--CCTCT-AATGTACA-TTTGTT-ATGAC  1064