BAC Information

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BAC

Clone NameB6Ng01-032H17
Chromosome16 (Build37)
Map Location 50,328,108 - 50,507,978
singlet/doubletdoublet
Overlap geneBbx, LOC100043414
Upstream geneEG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404
Downstream geneCcdc54, LOC672778, 5330426P16Rik, EG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032H17.bB6Ng01-032H17.g
ACCDH861806DH861807
length1,190827
definitionDH861806|Mus musculus domesticus DNA, BAC clone: B6Ng01-032H17, 5' end.DH861807|Mus musculus domesticus DNA, BAC clone: B6Ng01-032H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,328,108 - 50,329,322)(50,507,103 - 50,507,978)
sequence
gaattcatttaactcctctattatacttatttttgttctctgtttttcaa
gttcttagatttgatatcttcacttataggagtctcattttcatattcaa
tcaattcacggtataaaaataaatttgatgacttcaaatgtctcttattt
caaaggttccaaagctgtttttagcatcttcaccataattaaccatattt
cttatttatggattaaataacttagaaacattttgtttccatctcattct
ttggtatagaaaacagcttcctccaggttgtattcttaacctctaaacta
ttcttaaaactgactaagaatccaaaggcatttggctacaatcacatctg
ttaaaattattacactggaaaaagtattcatttcctttctcactttgtta
agtaacagtatgaataaagttctgttcaggaagaagagatggtgcacatc
tttaatcacagcacttgggaggctgaggcaagaagatgacgaatttgcga
tcaccctaggctatatacttgagtccctaactaaaaaaaaaaagtttatt
aacttgacaaacttaggtgaaaagcttacaagcctatttccctttcctaa
ttgtctatgcaaactacagacattccagtctgcagcagtacttggtcatt
tgcaaactgattatgaaacaataatctaagttgtctgtgaatgtaagaaa
gtgatgagcaaagttctgagggtcaaatacaaaaaaactagctaggaatc
atggcagttccccattccagttctgcagagacagtactccacattacaaa
cggatttgtgcttgaacaattttatttcaaacatgtgcacctgctggagg
acttcttggaattctaagcctatgtaggcttcgtctcactaaagaagggc
agtagatggtattttggacataaagtcaaaactgcccgtcctgatcagac
tttcacacttaggtcactcccaaggccactcccggacatgagagcatgac
agacatggagcaaaataaaaggaaaataattttacttgtaaacatgccat
gaaacttgggattagaacggccttctaggctcatgtatcacttgctagag
agaatatttgttaggttaggaggcgtgcctttgatgtggttctactggga
gggcctttaggcttctaagcagttcagtcactctcccctg
gaattcactctgtagaccaggctggcctccagagatgcacctacctctgc
ctcctgagctctgggattaaagatgtgcaccaccactgactgggggatct
caagatgcagtctacgccagcctagaactcacagagatccacctgcctct
gcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgc
ctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctct
gtctgtctccccagtgctgggattaaaggcatgagccatgacactcataa
cttttgactctaggacaacaatagaagcataaccagggtctgaagagatg
gctcagtggttaagagcatttactgctcactcagaggacccgagttcagt
tctcggcatccgcatctacaacctcctgttcaggctggcctcaaactcaa
gatctgcctacctctgcctctcagtgttggactaaggcatgtgccaccac
tgccaatagcaacattattttattctattttaagttgagtagaataacca
gatattactgtacactccttcttgaattccatcaaagacacattcgtgta
aactaatggaagaatcaccactaggacaaccttagaatggaagctcagac
actgagatctgtctagaatagtagactggagtagcacatcagagcgaaga
gattatgcttatgaagtgtcgttgcagctgtgagatgctcagcgagtaag
agcactgactgctctctgagtctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50328108_50329322
seq2: B6Ng01-032H17.b_47_1236

seq1  GAATTCATTTAACTCCTCTATTATACTTATTTTTGTTCTCTGTTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAACTCCTCTATTATACTTATTTTTGTTCTCTGTTTTTCAA  50

seq1  GTTCTTAGATTTGATATCTTCACTTATAGGAGTCTCATTTTCATATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGATTTGATATCTTCACTTATAGGAGTCTCATTTTCATATTCAA  100

seq1  TCAATTCACGGTATAAAAATAAATTTGATGACTTCAAATGTCTCTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCACGGTATAAAAATAAATTTGATGACTTCAAATGTCTCTTATTT  150

seq1  CAAAGGTTCCAAAGCTGTTTTTAGCATCTTCACCATAATTAACCATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTCCAAAGCTGTTTTTAGCATCTTCACCATAATTAACCATATTT  200

seq1  CTTATTTATGGATTAAATAACTTAGAAACATTTTGTTTCCATCTCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATGGATTAAATAACTTAGAAACATTTTGTTTCCATCTCATTCT  250

seq1  TTGGTATAGAAAACAGCTTCCTCCAGGTTGTATTCTTAACCTCTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATAGAAAACAGCTTCCTCCAGGTTGTATTCTTAACCTCTAAACTA  300

seq1  TTCTTAAAACTGACTAAGAATCCAAAGGCATTTGGCTACAATCACATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAACTGACTAAGAATCCAAAGGCATTTGGCTACAATCACATCTG  350

seq1  TTAAAATTATTACACTGGAAAAAGTATTCATTTCCTTTCTCACTTTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATTACACTGGAAAAAGTATTCATTTCCTTTCTCACTTTGTTA  400

seq1  AGTAACAGTATGAATAAAGTTCTGTTCAGGAAGAAGAGATGGTGCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGTATGAATAAAGTTCTGTTCAGGAAGAAGAGATGGTGCACATC  450

seq1  TTTAATCACAGCACTTGGGAGGCTGAGGCAAGAAGATGACGAATTTGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCACAGCACTTGGGAGGCTGAGGCAAGAAGATGACGAATTTGCGA  500

seq1  TCACCCTAGGCTATATACTTGAGTCCCTAACTAAAAAAAAAAAGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTAGGCTATATACTTGAGTCCCTAACTAAAAAAAAAAAGTTTATT  550

seq1  AACTTGACAAACTTAGGTGAAAAGCTTACAAGCCTATTTCCCTTTCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACAAACTTAGGTGAAAAGCTTACAAGCCTATTTCCCTTTCCTAA  600

seq1  TTGTCTATGCAAACTACAGACATTCCAGTCTGCAGCAGTACTTGGTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATGCAAACTACAGACATTCCAGTCTGCAGCAGTACTTGGTCATT  650

seq1  TGCAAACTGATTATGAAACAATAATCTAAGTTGTCTGTGAATGTAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTGATTATGAAACAATAATCTAAGTTGTCTGTGAATGTAAGAAA  700

seq1  GTGATGAGCAAAGTTCTGAGGGTCAAATACAAAAAAACTAGCTAGGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGCAAAGTTCTGAGGGTCAAATACAAAAAAACTAGCTAGGAATC  750

seq1  ATGGCAGTTCCCCATTCCAGTTCTGCAGAGACAGTACTCCACATTACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTCCCCATTCCAGTTCTGCAGAGACAGTACTCCACATTACAAA  800

seq1  CGGATTTGTGCTTGAACAATTTTATTTCAAACATGTGCACCTGCTGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTGTGCTTGAACAATTTTATTTCAAACATGTGCACCTGCTGGAGG  850

seq1  ACTTCTTGGAATTCTAAGCCTATGTAGGCTTCGTCTCACTAAAGAAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGGAATTCTAAGCCTATGTAGGCTTCGTCTCACTAAAGAAGGGC  900

seq1  AGTAGATGGTATTTTGGACATAAAGTCAAAACTGCCCGTCCTGATCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGGTATTTTGGACATAAAGTCAAAACTGCCCGTCCTGATCAGAC  950

seq1  TTTCAACACTTAGGTCACTCCCAAGGCCACTCCCGGACAATGAAGAGCAT  1000
      |||| ||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TTTC-ACACTTAGGTCACTCCCAAGGCCACTCCCGGAC-ATG-AGAGCAT  997

seq1  GAACAGACATGGAAGCATAAATAAAAAGGAAAATAATTTTTACTGT-AAC  1049
      | |||||||||| |||| |||| |||||||||||||||||   ||| |||
seq2  G-ACAGACATGG-AGCA-AAAT-AAAAGGAAAATAATTTTACTTGTAAAC  1043

seq1  ATGCCATGAAACTGTGGGAATAAGAACAGCCCTCCTAGGCTCATGTATTT  1099
      ||||||||||||| |||| || ||||| | ||| |||||||||||||  |
seq2  ATGCCATGAAACT-TGGG-ATTAGAAC-GGCCTTCTAGGCTCATGTA--T  1088

seq1  CACTGCTTAGGAGAGAATATTTGTAAGGGTTAGGAGGCGTGGCTTTGAGA  1149
      ||||   || |||||||||||||| | |||||||||||||| ||||  ||
seq2  CACTTGCTA-GAGAGAATATTTGTTA-GGTTAGGAGGCGTGCCTTT--GA  1134

seq1  TGTGTTACTACTGGGGATGGGCTTTAATGCTTCAGATGCCAAGTTCACAG  1199
      |||| | ||||||||   |||| || | |||||  | ||  ||||  |||
seq2  TGTGGTTCTACTGGG--AGGGCCTTTAGGCTTC-TAAGC--AGTT--CAG  1177

seq1  TCACTCTCTCTCCCTG  1215
      ||||||||   |||||
seq2  TCACTCTC---CCCTG  1190

seq1: chr16_50507103_50507978
seq2: B6Ng01-032H17.g_69_895 (reverse)

seq1  ACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTACTCGCTGAGCCATCT  50
      ||||| |||  |||| |||||||||||||||||||||||||||| |||||
seq2  ACTCA-GAC--TCAG-AGAGCAGTCAGTGCTCTTACTCGCTGAG-CATCT  45

seq1  CACAAGCCTGCAACGACACTTTCATAAAAGCATAAATCTCCTTTCCGGCT  100
      ||||   |||||||||||| |||||  |||||| ||||||  |||  |||
seq2  CACA--GCTGCAACGACAC-TTCAT--AAGCAT-AATCTC--TTC--GCT  85

seq1  CTGGTGTGCCTTACTCCAGTCCTTAACTATTCTAGGACAGATCTCCAGTG  150
      ||| |||||  ||||||||||    ||||||||| ||||||||| |||||
seq2  CTGATGTGC--TACTCCAGTC---TACTATTCTA-GACAGATCT-CAGTG  128

seq1  TCCCTGAGCTTCCATTCCTAAGGTTGTCCCTAGTGGTTGATTTCTTTCCA  200
      |  ||||||||||||| |||||||||| |||||||| |||||   |||||
seq2  T--CTGAGCTTCCATT-CTAAGGTTGT-CCTAGTGG-TGATT--CTTCCA  171

seq1  TTTAGTTTTTACACGAATGTGTCCTTTTGATGGAATTTCAAGAAGGAGTG  250
       ||||  ||||||||||||||||  |||||||||| ||||||||||||||
seq2  -TTAG--TTTACACGAATGTGTC--TTTGATGGAA-TTCAAGAAGGAGTG  215

seq1  TACAGTAATTATCTGGTTATTCTACTCAAACTTTAAAAAATAGAAATAAA  300
      |||||||| |||||||||||||||||| |||||   ||||||| ||||||
seq2  TACAGTAA-TATCTGGTTATTCTACTC-AACTT---AAAATAG-AATAAA  259

seq1  AATAAATGTTTGCTATTGGGCAGTGGTGGCACATGCCTTTAGTCCCAACA  350
      |   |||| |||||||| ||||||||||||||||||| ||||| ||||||
seq2  A--TAATG-TTGCTATT-GGCAGTGGTGGCACATGCC-TTAGT-CCAACA  303

seq1  CTTGAGAGGCAGAGGTAGGCAGATCTTTGAGTTTGAGGCCAGCCTGAACA  400
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  C-TGAGAGGCAGAGGTAGGCAGATC-TTGAGTTTGAGGCCAGCCTGAACA  351

seq1  GGAGGTTGTAGATGCGGATGCCGAGAACTGAACTCGGGTCCTCTGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGTAGATGCGGATGCCGAGAACTGAACTCGGGTCCTCTGAGTGA  401

seq1  GCAGTAAATGCTCTTAACCACTGAGCCATCTCTTCAGACCCTGGTTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAATGCTCTTAACCACTGAGCCATCTCTTCAGACCCTGGTTATGC  451

seq1  TTCTATTGTTGTCCTAGAGTCAAAAGTTATGAGTGTCATGGCTCATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGTTGTCCTAGAGTCAAAAGTTATGAGTGTCATGGCTCATGCCT  501

seq1  TTAATCCCAGCACTGGGGAGACAGACAGAGGCAGAGGCAGAGGCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTGGGGAGACAGACAGAGGCAGAGGCAGAGGCAGAGGC  551

seq1  AGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG  601

seq1  AGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAG  651

seq1  GCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGTGGATCTCTGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGTGGATCTCTGTGAGT  701

seq1  TCTAGGCTGGCGTAGACTGCATCTTGAGATCCCCCAGTCAGTGGTGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGGCGTAGACTGCATCTTGAGATCCCCCAGTCAGTGGTGGTGC  751

seq1  ACATCTTTAATCCCAGAGCTCAGGAGGCAGAGGTAGGTGCATCTCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAATCCCAGAGCTCAGGAGGCAGAGGTAGGTGCATCTCTGGAG  801

seq1  GCCAGCCTGGTCTACAGAGTGAATTC  876
      ||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAGAGTGAATTC  827