BAC Information

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BAC

Clone NameB6Ng01-032N04
Chromosome16 (Build37)
Map Location 63,621,451 - 63,715,873
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032N04.bB6Ng01-032N04.g
ACCDH862048DH862049
length1,1091,137
definitionDH862048|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N04, 5' end.DH862049|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,714,745 - 63,715,873)(63,621,451 - 63,622,621)
sequence
gaattcagcatgatataagcatttaactgtctttcttgttagaagtcttt
taggttaagtggataaaactaagaatatagatatgacaaaattatatttg
tttaacatttttttaagatttttgtcaactctcaactactatttctgaaa
aagatttcttgaatgtcattgttttggttctttttcacaaaacttaagtg
ttaattgaaaattagaaataaggtctcagacactgacatagttcagtata
ttactaatattttcccttgttgattgagtatagaaagtaatagaaaaaaa
taggtattccctctttattttctagttgttatgcacataaaatgtacatt
atgattctttagtaattcttatttcttgacatctatacacagtttttttt
tgagtagtgagaaaaaacgcaaacaaacaaaataaaaaacaccatcacca
caaacaataacaaaatccatggattttctttattttttaaggataaattt
aagtctcacaacagtgagaaaggtttactgttaactcattctgatgcctt
tggtatctccaagtgggcataagctaagttaaagaaaaagatgcatagtt
aaaagtagtaaccccacgcggagttctactgacatttatagaaagttatt
catgtctagcaacagagagctgcattcttgaatgatttttgtagaaaatt
ccttcttaattttttatggtgaggatctacaaagtatgacttctctttta
cgaatccagatacatgtgcaagcttagccgcattttgtcttcagtgttaa
gtactgtgattatttggaaaaaaaatttcagatctctgaatttatggtct
agtcttagtcagctggtaacagaatcaaacaaaccgcattctgttttatc
ttcttccatgtaccttcatttatcttgatagacgatagttgactgcaccg
ggttgaataaaagaaaagatagaaaacagaaagagaagtagagaggagaa
aatagaaagagaaatgaggaacagccagtataaataccagaaaatgataa
actgcaggaataacacaggaagaaagccattggggggtttgttgactaga
ttaagaatt
gaattccctggtttatttattttaacgaagaaatttgtttaattaactgg
tgtctacaagtatgaagtaataataaaaaaattaggaggtaaacatgaaa
tcttcggaacaattagaaaacgtctgacagaaattttgagtgaagacaac
cttattcttatactactgggttcccagagaccgaggcagagaattgttag
atgttaataacacggggaaatgaggggcgtagaatgaacaagatcacttg
aaatagagtccaaatcaactgagaacacaattctgattagaatcaggcta
atcacattgagatttgtttctctgcttgttttgttttaaaggcccgtgaa
gatcacttctctggtttgaatcacgatgactcgggtggagctaccacatc
ctagcatagaacagatggttcaactctgtatgcagctgggacactgcatg
aggcttctaaaaaaaggacctgatgtctcaattagctgaggaattgagag
gtataattaaagcacacttttagtagaagaaagactttcagataatttcc
actttaaagattatggatagaaaacattagagcgtggcgatttattttct
tgggttgctagttcctagcctcaagcatcggaagaatagaacaatttaca
tgtattaggctatattacagttagaaactagggaaaatatatcctggtct
tagacaaattaaggtttgattaaaactatgacgatagattagacggtaga
accggagagcatttttataattaaaaaagtaatctgtctctctacattta
aagatgcgtacgttttgtcacagaagttttccatgatcagtcaagtcttg
tgcgtgcaaatggttcctcaatctaaacctaagacaaatttacttctata
catttcattttatgattgtaatattatgcatatattcttcatgctttcgc
ttcctgacttttctgagaaagattactgcctttttctggaacagtgaatt
acaggagcaaagactagcttaggagagagaaaacttcttatctactgttg
ggctcaacagtatctttctatctagtctctgatcagataaaaaaaaggcc
aatcggattctctagtcatagaactatacctgtttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63714745_63715873
seq2: B6Ng01-032N04.b_46_1154 (reverse)

seq1  AATTCTTAATACTAAGTACAACAAAACCCACTCAATGGCCTTTCTTCCCT  50
      |||||||||| || ||| |||||||  || | |||||| |||||||||  
seq2  AATTCTTAAT-CT-AGT-CAACAAA--CCCCCCAATGG-CTTTCTTCC--  42

seq1  TGTGTTATTCCTGGCAGTTTATCATTTTCTGGGTATTTATACTGGCTGTT  100
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TGTGTTATTCCT-GCAGTTTATCATTTTCT-GGTATTTATACTGGCTGTT  90

seq1  CCCTCATTTCTCTTTCCTATTTTCTCCCTCTCTTACTTCTCTTTCTGTTT  150
       |||||||||||||| ||||||||| |||||| |||||||||||||| ||
seq2  -CCTCATTTCTCTTT-CTATTTTCT-CCTCTC-TACTTCTCTTTCTG-TT  135

seq1  TTCTATTCTTTTTCTTTTATTTCAACCCGGTGCAGTCAACTATCGTCTAT  200
      ||||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTAT--CTTTTCTTTTA-TTCAACCCGGTGCAGTCAACTATCGTCTAT  182

seq1  CAAGATAAATGAAGGTACATGGAAGAAGATAAAACAGAATGCGGTTTGTT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGATAAATGAAGGTACATGGAAGAAGATAAAACAGAATGCGGTTTG-T  231

seq1  TTGATTCTGTTACCAGCTGACTAAGACTAGACCATAAATTCAGAGATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTGTTACCAGCTGACTAAGACTAGACCATAAATTCAGAGATCTG  281

seq1  AAATTTTTTTTTCCAAATAATCACAGTACTTAACACTGAAGACAAAATGC  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-TTTTTTTTCCAAATAATCACAGTACTTAACACTGAAGACAAAATGC  330

seq1  GGCTAAGCTTGCACATGTATCTGGATTCGTAAAAGAGAAGTCATACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGCTTGCACATGTATCTGGATTCGTAAAAGAGAAGTCATACTTTG  380

seq1  TAGATCCTCACCATAAAAAATTAAGAAGGAATTTTCTACAAAAATCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTCACCATAAAAAATTAAGAAGGAATTTTCTACAAAAATCATTC  430

seq1  AAGAATGCAGCTCTCTGTTGCTAGACATGAATAACTTTCTATAAATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAGCTCTCTGTTGCTAGACATGAATAACTTTCTATAAATGTCA  480

seq1  GTAGAACTCCGCGTGGGGTTACTACTTTTAACTATGCATCTTTTTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCCGCGTGGGGTTACTACTTTTAACTATGCATCTTTTTCTTTA  530

seq1  ACTTAGCTTATGCCCACTTGGAGATACCAAAGGCATCAGAATGAGTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTTATGCCCACTTGGAGATACCAAAGGCATCAGAATGAGTTAAC  580

seq1  AGTAAACCTTTCTCACTGTTGTGAGACTTAAATTTATCCTTAAAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTTTCTCACTGTTGTGAGACTTAAATTTATCCTTAAAAAATAA  630

seq1  AGAAAATCCATGGATTTTGTTATTGTTTGTGGTGATGGTGTTTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCATGGATTTTGTTATTGTTTGTGGTGATGGTGTTTTTTATTT  680

seq1  TGTTTGTTTGCGTTTTTTCTCACTACTCAAAAAAAAACTGTGTATAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCGTTTTTTCTCACTACTCAAAAAAAAACTGTGTATAGATG  730

seq1  TCAAGAAATAAGAATTACTAAAGAATCATAATGTACATTTTATGTGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATAAGAATTACTAAAGAATCATAATGTACATTTTATGTGCATA  780

seq1  ACAACTAGAAAATAAAGAGGGAATACCTATTTTTTTCTATTACTTTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGAAAATAAAGAGGGAATACCTATTTTTTTCTATTACTTTCTAT  830

seq1  ACTCAATCAACAAGGGAAAATATTAGTAATATACTGAACTATGTCAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCAACAAGGGAAAATATTAGTAATATACTGAACTATGTCAGTGT  880

seq1  CTGAGACCTTATTTCTAATTTTCAATTAACACTTAAGTTTTGTGAAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTTATTTCTAATTTTCAATTAACACTTAAGTTTTGTGAAAAAG  930

seq1  AACCAAAACAATGACATTCAAGAAATCTTTTTCAGAAATAGTAGTTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACAATGACATTCAAGAAATCTTTTTCAGAAATAGTAGTTGAGA  980

seq1  GTTGACAAAAATCTTAAAAAAATGTTAAACAAATATAATTTTGTCATATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAAAATCTTAAAAAAATGTTAAACAAATATAATTTTGTCATATC  1030

seq1  TATATTCTTAGTTTTATCCACTTAACCTAAAAGACTTCTAACAAGAAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTAGTTTTATCCACTTAACCTAAAAGACTTCTAACAAGAAAGA  1080

seq1  CAGTTAAATGCTTATATCATGCTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  CAGTTAAATGCTTATATCATGCTGAATTC  1109

seq1: chr16_63621451_63622621
seq2: B6Ng01-032N04.g_68_1204

seq1  GAATTCCCTGGTTTATTTATTTTAACGAAGAAATTTGTTTAATTAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGTTTATTTATTTTAACGAAGAAATTTGTTTAATTAACTGG  50

seq1  TGTCTACAAGTATGAAGTAATAATAAAAAAATTAGGAGGTAAACATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAAGTATGAAGTAATAATAAAAAAATTAGGAGGTAAACATGAAA  100

seq1  TCTTCGGAACAATTAGAAAACGTCTGACAGAAATTTTGAGTGAAGACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGAACAATTAGAAAACGTCTGACAGAAATTTTGAGTGAAGACAAC  150

seq1  CTTATTCTTATACTACTGGGTTCCCAGAGACCGAGGCAGAGAATTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTATACTACTGGGTTCCCAGAGACCGAGGCAGAGAATTGTTAG  200

seq1  ATGTTAATAACACGGGGAAATGAGGGGCGTAGAATGAACAAGATCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATAACACGGGGAAATGAGGGGCGTAGAATGAACAAGATCACTTG  250

seq1  AAATAGAGTCCAAATCAACTGAGAACACAATTCTGATTAGAATCAGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGTCCAAATCAACTGAGAACACAATTCTGATTAGAATCAGGCTA  300

seq1  ATCACATTGAGATTTGTTTCTCTGCTTGTTTTGTTTTAAAGGCCCGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTGAGATTTGTTTCTCTGCTTGTTTTGTTTTAAAGGCCCGTGAA  350

seq1  GATCACTTCTCTGGTTTGAATCACGATGACTCGGGTGGAGCTACCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTTCTCTGGTTTGAATCACGATGACTCGGGTGGAGCTACCACATC  400

seq1  CTAGCATAGAACAGATGGTTCAACTCTGTATGCAGCTGGGACACTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATAGAACAGATGGTTCAACTCTGTATGCAGCTGGGACACTGCATG  450

seq1  AGGCTTCTAAAAAAAGGACCTGATGTCTCAATTAGCTGAGGAATTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTAAAAAAAGGACCTGATGTCTCAATTAGCTGAGGAATTGAGAG  500

seq1  GTATAATTAAAGCACACTTTTAGTAGAAGAAAGACTTTCAGATAATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTAAAGCACACTTTTAGTAGAAGAAAGACTTTCAGATAATTTCC  550

seq1  ACTTTAAAGATTATGGATAGAAAACATTAGAGCGTGGCGATTTATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGATTATGGATAGAAAACATTAGAGCGTGGCGATTTATTTTCT  600

seq1  TGGGTTGCTAGTTCCTAGCCTCAAGCATCGGAAGAATAGAACAATTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCTAGTTCCTAGCCTCAAGCATCGGAAGAATAGAACAATTTACA  650

seq1  TGTATTAGGCTATATTACAGTTAGAAACTAGGGAAAATATATCCTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGGCTATATTACAGTTAGAAACTAGGGAAAATATATCCTGGTCT  700

seq1  TAGACAAATTAAGGTTTGATTAAAACTATGACGATAGATTAGACGGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAATTAAGGTTTGATTAAAACTATGACGATAGATTAGACGGTAGA  750

seq1  ACCGGAGAGCATTTTTATAATTAAAAAAGTAATCTGTCTCTCTACATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAGAGCATTTTTATAATTAAAAAAGTAATCTGTCTCTCTACATTTA  800

seq1  AAGATGCGTACG-TTTGTCACAGAAGTTTTCCATGATCAGTCAAGTCTTG  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATGCGTACGTTTTGTCACAGAAGTTTTCCATGATCAGTCAAGTCTTG  850

seq1  TGCGTGCAAATGGTTCCTCAATCTAAACCTAAGACAAATTTACTTCTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCAAATGGTTCCTCAATCTAAACCTAAGACAAATTTACTTCTATA  900

seq1  CATTTCATTTTATGAATTGTAAATATTATTGCATATATTCTTCATGCTTT  949
      |||||||||||||| ||||| ||||||| |||||||||||||||||||||
seq2  CATTTCATTTTATG-ATTGT-AATATTA-TGCATATATTCTTCATGCTTT  947

seq1  CGCTTCCTGACTTTTTCTGAGAAAAAGAATACTGCCTTTTTCTGGAACAA  999
      ||||||||||| |||||||||  ||||| ||||||||||||||||||| |
seq2  CGCTTCCTGAC-TTTTCTGAG--AAAGATTACTGCCTTTTTCTGGAAC-A  993

seq1  GTGAATTACAGGGAGCAAAGAACTAGCTAAGGAGAGAGAAATACCTTCTT  1049
      |||||||||| ||||||||| ||||||| |||||||||||  | ||||||
seq2  GTGAATTACA-GGAGCAAAG-ACTAGCTTAGGAGAGAGAA--AACTTCTT  1039

seq1  ATCTACTGTTGTGCTCAAACAAGTAATCCTTTTCTATCCTAGTCTCTGAG  1099
      ||||||||||| ||||||   ||| |||  ||||||| ||||||||||| 
seq2  ATCTACTGTTGGGCTCAA--CAGT-ATC--TTTCTAT-CTAGTCTCTGA-  1082

seq1  TCAGAAAATAAAAAAAAAAAAAAAAGCCAATCCCGATTCCTCAAAGTACA  1149
      ||||          | |||||||| |||||| | |||| |||  ||| ||
seq2  TCAG----------ATAAAAAAAAGGCCAAT-CGGATT-CTC-TAGT-CA  1118

seq1  TAGAAACTAAATACCTGTTTAC  1171
      ||| ||||  ||||||||||||
seq2  TAG-AACT--ATACCTGTTTAC  1137