BAC Information

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BAC

Clone NameB6Ng01-033F03
Chromosome4 (Build37)16 (Build37)
Map Location 120,269,131 - 120,269,35014,896,562 - 14,897,111
singlet/doubletsingletsinglet
Overlap geneEG667063
Upstream geneFoxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps
Downstream geneCited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033F03.bB6Ng01-033F03.g
ACCDH862402DH862403
length667865
definitionDH862402|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F03, 5' end.DH862403|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,269,131 - 120,269,350)(14,896,562 - 14,897,111)
sequence
gaattctgcactaaaactgacgggccctaggcttagttgggttgggagaa
ttttaatgatatcatctgtttccttggggggttacatctatttttgttta
tctgactttgatttaagaggaatcttttgagaacattgtccatttccttt
agattttccagttttgtgggatacaggattttaagtacaatctaatgagt
ctttgaatttcctcagtgtctattgctatgttccgtttttcatttttgat
tttgttattttggatattctttctctgtcttttagttagtttggatgaga
gtttttctatcttcttgattttctcaaagaaccaactctttgttttattg
atcctttttattctcttcatttctattttattaatttcagtcctcaattt
attttctgctctctataccttttaggtgtgtttgctatttttattttgtt
gttgttgtagagctttcatctgtgcttttttttttttttttttttttctg
tttgtttggttggtttggtttggtttttggacttttttcaagacagggtt
tctctgtgtagccctggctgtcctggaactcactctgtagaccaggctgg
cctcgaactcagaaatccacctgccctctgcctccaaagtgctgggatta
aaggcgtgtgccaccac
gaattctacccaatttcctggtactagtgaggttgcagcaaacttcctat
tcctctacttcttacaatctttcacaatagttcccaaaccttaagaagaa
gaattgtgttgtccatatgtcaggtgggattaggtagcacacagtctctt
gttctctgcattttgacagttatggttgtttgtaatgctttcaatctgtg
ggcataagggtaaatatttagaaagtaattaagaattatgctggtttagt
caagtggtggttatggattcttctccgagatctacaacttcatcagccct
agatagttggctaggtttcctagtaccagacatcgcttgatcttgttgat
ctcaagtccaattaaaagtcattggttaccactaaggtatgcaggtcact
actgtaaactctatcatgccatgcttcttgttattatggttcatagtcgc
caaagctggataaaactatcggtgtttcccttccttggaagattgcacgg
tggcttctggtaccatgaagactagtcttcagtgaggagctttcaagcca
gatccagcttggatgctctgagctctgtgtctaaatggtgtggtgtcttc
agccacaggcacttaccagtcacttctgggtgagcaacaaggctaaaagc
aaaaatctagaatggtttggtagtttcttgagaagggggtcttcacaagc
ctggcgttggaatttttgttagatactttatttggggtagggggtgacat
tgccagccaaactgggaaattttcattagaactatatgtttgttatatga
attatatataatttatgaatagatgatctttatactttttcagacatcac
tactttaatttaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_120269131_120269350
seq2: B6Ng01-033F03.b_484_713

seq1  TTTTTTTTTTGTTGTTGTTTTTTGTTTTTAAATT----TTTTTTTAATGT  46
      ||||| ||||||||||||| |     ||| |  |    |||||||  | |
seq2  TTTTTATTTTGTTGTTGTTGTAGAGCTTTCATCTGTGCTTTTTTTTTTTT  50

seq1  TTTTTTTTTTTTGCTTGTTT-GTTTGTTTGG-TTGGTTTTTGG---TTTT  91
      |||||||||| || |||||| ||| |||||| |||||||||||   ||||
seq2  TTTTTTTTTTCTGTTTGTTTGGTTGGTTTGGTTTGGTTTTTGGACTTTTT  100

seq1  TCGAGACAGGGTTTCTCTGTATGGTCTTGGCTGTCCTGGAACTCACTTTG  141
      || ||||||||||||||||| | | | |||||||||||||||||||| ||
seq2  TCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTG  150

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG-TCTCTGCCTCCCA  190
      ||||||||||||||||||||||||||||||| ||||  |||||||||| |
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCCTCTGCCTCCAA  200

seq1  AGTGCTGGGATTAAAGGCGTGCGCCACCAC  220
      ||||||||||||||||||||| ||||||||
seq2  AGTGCTGGGATTAAAGGCGTGTGCCACCAC  230

seq1: chr16_14896562_14897111
seq2: B6Ng01-033F03.g_385_930 (reverse)

seq1  GGGTAAAATAAAAGTAGTGATGTCTGAAAAAGTTATAAAGATCATCTATT  50
      |||| |||| |||||||||||||||||||||| ||||||||||||||| |
seq2  GGGT-AAATTAAAGTAGTGATGTCTGAAAAAG-TATAAAGATCATCTA-T  47

seq1  TCATAAAATTATATATAATTCATATAACAAACATATAGTTCTAATGAAAA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAT-AAATTATATATAATTCATATAACAAACATATAGTTCTAATGAAAA  96

seq1  TTTCCCAGTTTGGCTGGCAATGTCACCCCCTACCCCAAATAAAGTATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTTTGGCTGGCAATGTCACCCCCTACCCCAAATAAAGTATCTA  146

seq1  ACAAAAATTCCAACGCCAGGCTTGTGAAGACCCCCTTCTCAAGAAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTCCAACGCCAGGCTTGTGAAGACCCCCTTCTCAAGAAACTAC  196

seq1  CAAACCATTCTAGATTTTTGCTTTTAGCCTTGTTGCTCACCCAGAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATTCTAGATTTTTGCTTTTAGCCTTGTTGCTCACCCAGAAGTGA  246

seq1  CTGGTAAGTGCCTGTGGCTGAAGACACCACACCATTTAGACACAGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGTGCCTGTGGCTGAAGACACCACACCATTTAGACACAGAGCTC  296

seq1  AGAGCATCCAAGCTGGATCTGGCTTGAAAGCTCCTCACTGAAGACTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCAAGCTGGATCTGGCTTGAAAGCTCCTCACTGAAGACTAGTC  346

seq1  TTCATGGTACCAGAAGCCACCGTGCAATCTTCCAAGGAAGGGAAACACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTACCAGAAGCCACCGTGCAATCTTCCAAGGAAGGGAAACACCG  396

seq1  ATAGTTTTATCCAGCTTTGGCGACTATGAACCATAATAACAAGAAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTATCCAGCTTTGGCGACTATGAACCATAATAACAAGAAGCATG  446

seq1  GCATGATAGAGTTTACAGTAGTGACCTGCATACCTTAGTGGTAACCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATAGAGTTTACAGTAGTGACCTGCATACCTTAGTGGTAACCAATG  496

seq1  ACTTTTAATTGGACTTGAGATCAACAAGATCAAGCGATGTCTGGTACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATTGGACTTGAGATCAACAAGATCAAGCGATGTCTGGTACTAG  546