BAC Information

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BAC

Clone NameB6Ng01-033L13
Chromosome16 (Build37)
Map Location 93,087,981 - 93,209,189
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L13.bB6Ng01-033L13.g
ACCDH862692DH862693
length805700
definitionDH862692|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L13, 5' end.DH862693|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,208,387 - 93,209,189)(93,087,981 - 93,088,678)
sequence
gaattcatttgcaagagacacaagatctaagatgacgggtctctagagtg
ggcgtgtccaggcagtgtgcctttggggccccaccttcagagcccacgcc
atgttgtctgcaagcgtataccatttgcaagttcatctttagtgatgtct
tcggccctcagtgtggcctgtctcctttggaatgaggttctaggagacca
aagttaaatttttgttttgccacattttcacaaagacatgtgcctggtag
aaatccttgtactctttgcttctgaggtttcacaatgtctccaaggaggg
ctttgtggatccttgggagcggaataaagagcctgacggatgtgtgggca
gtttgtattggaaggagttagtctggcctgttggtgattagatgatagac
taggctttgcctggcttgcatggattgtaattcccatttcagcctgtcca
cccatggtggaggtagacagagatgtttctcacattctgggaggagtgta
cccgaagctggagtagaatcttggctttcctctcccacaggtgacatatg
ctgtggctttatctcttgactgcatagactgtttagcaagctgcagtttt
gttggccgtctgagggtgttagcttttgaccctaaaggaaggctccatga
tcaggcaggactcacaaatcgggggtcatagatgcatctcacccaagatg
ggaagaaaagactgttccctgcttcttatggacccttgcatcactgtgaa
tgtccctggaggattttgcacaacctgaatcagcctgaaacatccacacc
ctgaa
gaattctcaggtgtaggtgctcatgggaagggggtaactcggagaagcag
tttgatttcaggattcctgtgccctctcggcagaggaaacaaaatctgga
tttcaaaggataggacgatacattatgggtatgaggtcaggatatacaca
gggaaagtaaagaaaggtacaggctatttttagggaggcctgctaacgca
aacccatctcggtatcgatcagggaatctttgtctttgatgcagtcacct
tccacgctctggtatggattgaggaacagctagctccctccgggtgaagt
ggaggtgtgcgccttgctctcaggcaggcagtgctagggcacagagcatc
tccgtatctctcagcgatcaaatatatttagctcaaagtcgctcttgtgc
tacggcggcatctttcgggtggccattacagccatacaggccatccccat
gatgacgtggggtagggaggatccaggcacagagggaggaaaggaaggag
gaacagacagtatgtctcaaaatgctcttcccatttaagacaggtctttt
cgcttccaagaacccaatccagaaaaacctctcataagcatgcccagagg
gctgcctcctgggcgctcccagctcctgttgagttggtaatcgatattaa
caagcccaaatgggatctgtagggggacagtggagaacacccaaccggga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93208387_93209189
seq2: B6Ng01-033L13.b_42_846 (reverse)

seq1  TTCAGGGTGTGGATGTTTCAGGCTGCTTCCGGTTGTGCAGACTCCTCCAG  50
      ||||||||||||||||||||||||| ||| ||||||||| | ||||||||
seq2  TTCAGGGTGTGGATGTTTCAGGCTGATTCAGGTTGTGCAAAATCCTCCAG  50

seq1  GGACATTCACAGTGATGCAAGGGTCCATAAGAAGCAGGG-ACAGTCTTTT  99
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGACATTCACAGTGATGCAAGGGTCCATAAGAAGCAGGGAACAGTCTTTT  100

seq1  CTTCCCATCTTGGGTGAGATGCATCTATGACCCCTGATTTGTGAGTCCTG  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTCCCATCTTGGGTGAGATGCATCTATGACCCCCGATTTGTGAGTCCTG  150

seq1  CCTGATCATGGAGCCTTCCTTTAGGGTC-AAAGCTAACACCCTCAGACGG  198
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGATCATGGAGCCTTCCTTTAGGGTCAAAAGCTAACACCCTCAGACGG  200

seq1  CCAACAAAACTGCAGCTTGCTAAACAGTCTATGCAGTCAAGAGATAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAACTGCAGCTTGCTAAACAGTCTATGCAGTCAAGAGATAAAGC  250

seq1  CACAGCATATGTCACCTGTGGGAGAGGAAAGCCAAGATTCTACTCCAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATATGTCACCTGTGGGAGAGGAAAGCCAAGATTCTACTCCAGCT  300

seq1  TCGGGTACACTCCTCCCAGAATGTGAGAAACATCTCTGTCTACCTCCACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTACACTCCTCCCAGAATGTGAGAAACATCTCTGTCTACCTCCACC  350

seq1  ATGGGTGGACAGGCTGAAATGGGAATTACAATCCATGCAAGCCAGGCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGACAGGCTGAAATGGGAATTACAATCCATGCAAGCCAGGCAAA  400

seq1  GCCTAGTCTATCATCTAATCACCAACAGGCCAGACTAACTCCTTCCAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCTATCATCTAATCACCAACAGGCCAGACTAACTCCTTCCAATA  450

seq1  CAAACTGCCCACACATCCGTCAGGCTCTTTATTCCGCTCCCAAGGATCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCCCACACATCCGTCAGGCTCTTTATTCCGCTCCCAAGGATCCA  500

seq1  CAAAGCCCTCCTTGGAGACATTGTGAAACCTCAGAAGCAAAGAGTACAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTCCTTGGAGACATTGTGAAACCTCAGAAGCAAAGAGTACAAG  550

seq1  GATTTCTACCAGGCACATGTCTTTGTGAAAATGTGGCAAAACAAAAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTACCAGGCACATGTCTTTGTGAAAATGTGGCAAAACAAAAATTT  600

seq1  AACTTTGGTCTCCTAGAACCTCATTCCAAAGGAGACAGGCCACACTGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGTCTCCTAGAACCTCATTCCAAAGGAGACAGGCCACACTGAGG  650

seq1  GCCGAAGACATCACTAAAGATGAACTTGCAAATGGTATACGCTTGCAGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGACATCACTAAAGATGAACTTGCAAATGGTATACGCTTGCAGAC  700

seq1  AACATGGCGTGGGCTCTGAAGGTGGGGCCCCAAAGGCACACTGCCTGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCGTGGGCTCTGAAGGTGGGGCCCCAAAGGCACACTGCCTGGAC  750

seq1  ACGCCCACTCTAGAGACCCGTCATCTTAGATCTTGTGTCTCTTGCAAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCACTCTAGAGACCCGTCATCTTAGATCTTGTGTCTCTTGCAAATG  800

seq1  AATTC  803
      |||||
seq2  AATTC  805

seq1: chr16_93087981_93088678
seq2: B6Ng01-033L13.g_70_769

seq1  GAATTCTCAGGTGTAGGTGCTCATGGGAAGGGGGTAACTCGGAGAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTGTAGGTGCTCATGGGAAGGGGGTAACTCGGAGAAGCAG  50

seq1  TTTGATTTCAGGATTCCTGTGCCCTCTCGGCAGAGGAAACAAAATCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCAGGATTCCTGTGCCCTCTCGGCAGAGGAAACAAAATCTGGA  100

seq1  TTTCAAAGGATAGGACGATACATTATGGGTATGAGGTCAGGATATACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGATAGGACGATACATTATGGGTATGAGGTCAGGATATACACA  150

seq1  GGGAAAGTAAAGAAAGGTACAGGCTATTTTTAGGGAGGCCTGCTAACGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTAAAGAAAGGTACAGGCTATTTTTAGGGAGGCCTGCTAACGCA  200

seq1  AACCCATCTCGGTATCGATCAGGGAATCTTTGTCTTTGATGCAGTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTCGGTATCGATCAGGGAATCTTTGTCTTTGATGCAGTCACCT  250

seq1  TCCACGCTCTGGTATGGATTGAGGAACAGCTAGCTCCCTCCGGGTGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGCTCTGGTATGGATTGAGGAACAGCTAGCTCCCTCCGGGTGAAGT  300

seq1  GGAGGTGTGCGCCTTGCTCTCAGGCAGGCAGTGCTAGGGCACAGAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGCGCCTTGCTCTCAGGCAGGCAGTGCTAGGGCACAGAGCATC  350

seq1  TCCGTATCTCTCAGCGATCAAATATATTTAGCTCAAAGTCGCTCTTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATCTCTCAGCGATCAAATATATTTAGCTCAAAGTCGCTCTTGTGC  400

seq1  TACGGCGGCATCTTTCGGGTGGCCATTACAGCCATACAGGCCATCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCGGCATCTTTCGGGTGGCCATTACAGCCATACAGGCCATCCCCAT  450

seq1  GATGACGTGGGGTAGGGAGGATCCAGGCACAGAGGGAGGAAAGGAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACGTGGGGTAGGGAGGATCCAGGCACAGAGGGAGGAAAGGAAGGAG  500

seq1  GAACAGACAGTATGTCTCAAAATGCTCTTCCCATTTAAGACAGGTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACAGTATGTCTCAAAATGCTCTTCCCATTTAAGACAGGTCTTTT  550

seq1  CGCTTCCAAGAACCCAATCCAGAAAAACCTCTCATAAGCATGCCCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCAAGAACCCAATCCAGAAAAACCTCTCATAAGCATGCCCAGAGG  600

seq1  GCTGCCTCCTGGGCGCTCCCAGCTCCTGTTGAGTTGATAATCGATATTAA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTGCCTCCTGGGCGCTCCCAGCTCCTGTTGAGTTGGTAATCGATATTAA  650

seq1  CAAGCCCAAATGGGATCTGTA-GGGGACAGTGGAGAACA-CCAACCGGGA  698
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CAAGCCCAAATGGGATCTGTAGGGGGACAGTGGAGAACACCCAACCGGGA  700