BAC Information

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BAC

Clone NameB6Ng01-034D09
Chromosome16 (Build37)2 (Build37)
Map Location 4,317,817 - 4,318,873104,549,369 - 104,549,416
singlet/doubletsingletsinglet
Overlap geneAdcy9
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332
Downstream geneEG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D09.bB6Ng01-034D09.g
ACCDH863030DH863031
length1,045138
definitionDH863030|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D09, 5' end.DH863031|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,317,817 - 4,318,873)(104,549,369 - 104,549,416)
sequence
gaattcctggacagatagcctagccaaaaagcagtgtgctccaggtacag
ctgggagacccatagtgcctcaagggaatgaagtaaaaagtgacagagca
ggacaaccaatgtcctctgctggcatcatacaagcacacacaagaacata
cattcgtatatgtatgtatgtatgtatctgcatataccacatacacagac
acatacgcatgtgcacacaaactcaaaggaaagacatacgccttctgaag
acagagtggtttgtggacactggggtttggcccctgactaccatggaact
tgactctggctgcctttcctgtcacaaggaaataatcctgacaccttgat
ctgctgggctctggtcacctgaaatgacccaagatgctgtaacttccact
ttggctcttctgagtagctctactggcacagacacactaaagggagtgta
accatcccgtaaacagtatttctacaggctaaggagtttgctggctgttg
cctgggtaaccggagagtccttggaaactcaccaagagcatgcctcaaca
cttccccctcccacctcggtgggcacaggctttgaaggaaaacccaaagc
cattcctctaatacatatgaacccatttttcatttgcttctaacatgttt
ccacgcatgcaccctgattctggtcagaacacatggtatagagctgcaga
gtggggttgctggacttttttggtttgtttttatttcaaggctgtttccc
attataagataaatcattttgagttaacacctgtccctttccataactgc
cacagagaagcctctttgggggatggaaatatcagtcctggttttgcctt
gtttagtctactgattactgactagttagcagtgtgtcctggttactaga
gcagcatcctctactacaagctcacttggacaggctggctggggtgagca
cactagacaaccacatcatcactgaaatcccctctaagctcccctgtctc
aatgttctcctcacatcgtccttaactaggtcagattccattttc
cttgttctgaggcagaggtggtggatctctgagtttgaaccagtctggtc
tacaaaatgagttccagaacagccacaactacacagaaaaagcctgtctc
aaaaagtaaaaattaaaaaaaaaggggggggggaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4317817_4318873
seq2: B6Ng01-034D09.b_48_1091

seq1  GAATTCCTGGACAGATAGCCTAGCCAAAAAGCAGTGTGCTCCAGGTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGACAGATAGCCTAGCCAAAAAGCAGTGTGCTCCAGGTACAG  50

seq1  CTGGGAGACCCATAGTGCCTCAAGGGAATGAAGTAAAAAGTGACAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGACCCATAGTGCCTCAAGGGAATGAAGTAAAAAGTGACAGAGCA  100

seq1  GGACAACCAATGTCCTCTGCTGGCATCATACAAGCACACACAAGAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCAATGTCCTCTGCTGGCATCATACAAGCACACACAAGAACATA  150

seq1  CATTCGTATATGTATGTATGTATGTATCTGCATATACCACATACACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTATATGTATGTATGTATGTATCTGCATATACCACATACACAGAC  200

seq1  ACATACGCATGTGCACACAAACTCAAAGGAAAGACATACGCCTTCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGCATGTGCACACAAACTCAAAGGAAAGACATACGCCTTCTGAAG  250

seq1  ACAGAGTGGTTTGTGGACACTGGGGTTTGGCCCCTGACTACCATGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGGTTTGTGGACACTGGGGTTTGGCCCCTGACTACCATGGAACT  300

seq1  TGACTCTGGCTGCCTTTCCTGTCACAAGGAAATAATCCTGACACCTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGCTGCCTTTCCTGTCACAAGGAAATAATCCTGACACCTTGAT  350

seq1  CTGCTGGGCTCTGGTCACCTGAAATGACCCAAGATGCTGTAACTTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGCTCTGGTCACCTGAAATGACCCAAGATGCTGTAACTTCCACT  400

seq1  TTGGCTCTTCTGAGTAGCTCTACTGGCACAGACACACTAAAGGGAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTTCTGAGTAGCTCTACTGGCACAGACACACTAAAGGGAGTGTA  450

seq1  ACCATCCCGTAAACAGTATTTCTACAGGCTAAGGAGTTTGCTGGCTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCGTAAACAGTATTTCTACAGGCTAAGGAGTTTGCTGGCTGTTG  500

seq1  CCTGGGTAACCGGAGAGTCCTTGGAAACTCACCAAGAGCATGCCTCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAACCGGAGAGTCCTTGGAAACTCACCAAGAGCATGCCTCAACA  550

seq1  CTTCCCCCTCCCACCTCGGTGGGCACAGGCTTTGAAGGAAAACCCAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTCCCACCTCGGTGGGCACAGGCTTTGAAGGAAAACCCAAAGC  600

seq1  CATTCCTCTAATACATATGAACCCA-TTTTCATTTGCTTCTAACATGTTT  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATTCCTCTAATACATATGAACCCATTTTTCATTTGCTTCTAACATGTTT  650

seq1  CCACGCATGCACCCTGATTCTGGTCAGAACACATGGTATAGAGCTGCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCATGCACCCTGATTCTGGTCAGAACACATGGTATAGAGCTGCAGA  700

seq1  GTGGGGTTGCTGGACTTTTTTGGTTTGTTTTTA-TTCAAGGCTGTTTCCC  748
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGGGTTGCTGGACTTTTTTGGTTTGTTTTTATTTCAAGGCTGTTTCCC  750

seq1  ATTATAAGATAAATCATTTTGAAGTTAACACCTGTCCCTTTCCATAACTG  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTATAAGATAAATCATTTTG-AGTTAACACCTGTCCCTTTCCATAACTG  799

seq1  CCACAGAGAAGCCTCTTTGGGGGATGGAAATATCAGTCCTGGTTTTGCC-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACAGAGAAGCCTCTTTGGGGGATGGAAATATCAGTCCTGGTTTTGCCT  849

seq1  TGTTTAGTCTACTGATTACTGACTAGTTAGCAAGTGTGTCCTGG-TACTA  896
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TGTTTAGTCTACTGATTACTGACTAGTTAGC-AGTGTGTCCTGGTTACTA  898

seq1  GAAGCAGCATCCTCTACTACAAGGCTCACTTGGACATGGCTGGCTGGGGT  946
      | |||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  G-AGCAGCATCCTCTACTACAA-GCTCACTTGGACA-GGCTGGCTGGGGT  945

seq1  GAGCATCACTATGACAACACACATCAATCACTGAAATCCCCTCTAAGCTC  996
      ||||| ||||| |||||| |||||| ||||||||||||||||||||||||
seq2  GAGCA-CACTA-GACAAC-CACATC-ATCACTGAAATCCCCTCTAAGCTC  991

seq1  CACCTGTCTCAATGTTTCCTCCTCACATCGTCCTTAACATAGGCTCAGTA  1046
      | ||||||||||||||  |||||||||||||||||||| |||| ||||  
seq2  C-CCTGTCTCAATGTT--CTCCTCACATCGTCCTTAAC-TAGG-TCAG--  1034

seq1  AATTCCATTTT  1057
       ||||||||||
seq2  -ATTCCATTTT  1044

seq1: chr2_104549369_104549416
seq2: B6Ng01-034D09.g_168_213 (reverse)

seq1  TTCCTCCCCCCCCCCTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGG  48
      ||||||||||||||||||||||||  |||||    |||||||||||||
seq2  TTCCTCCCCCCCCCCTTTTTTTTTAATTTTT--ACTTTTTGAGACAGG  46