BAC Information

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BAC

Clone NameB6Ng01-034K02
Chromosome16 (Build37)
Map Location 78,946,519 - 78,947,576
singlet/doubletsinglet
Overlap geneChodl
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
Downstream genePrss7, EG383172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034K02.bB6Ng01-034K02.g
ACCDH863325DH863326
length5701,057
definitionDH863325|Mus musculus domesticus DNA, BAC clone: B6Ng01-034K02, 5' end.DH863326|Mus musculus domesticus DNA, BAC clone: B6Ng01-034K02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcttaatctaatttaaatgtgaattctcttgtgacgatggttt
taatttttgcctaatcctcaatgcttctattgcacccttaagatctcatt
agaaataattaggactcatcccagatacagtcaccaaactccaacactat
aatgggtgctaagaaatgcttgctgaaaaaaaaaaaaagcctattatagc
tgtctcctgagaggccctgccagagccttacaaatactgagttggatgct
cgtacccaaccattgcactgagtgtggggtccccaatggagaagttagag
aaaagactgaaggagctgaaagggtttgcaaccccataggaagaacaaca
atatcaaccaaccaaaccttcccccaacccccagatatccaagggactaa
accaccaaccaaggagtgcatatagcttcagctgcatatgaagcagagga
tgaacttgccaggcatcagtgggaggagcggtccttggtcctatgaaggg
aggcttgatagatgccccagtgtaggggaatcgagggcagggaggcgtga
gtgggtaggtgggtggagga

gaattcattatcttctaggtgaaccatgattataataattgttatgactt
agcataaaatctttagttgtccaatgattcagaaaattaataaaatgaga
caggtaagattaatgcattttgaaaatcagctcatgttggaaacacaaat
gtagtagaaattttaaaaccacgcatatttaattgagcatgtcaaccagg
gcattacaatttggtttgggctgttttcaaagcatccatgtatttttaat
atggctttgtacttggaatttacttattttggtaaatattatattttacc
ttaagctttaaggacatgtgttcataaccttgtattggggtccttcctgg
gctatcactgaacactaagtttatttttcttttgtaggcataattcccaa
tctaatctatgttattataccaacgattccgctgctcttactgatactgg
ttgctttgggaacctgctgtttccagatgttgcataaaaggtaaaaaaca
tattgctgtccagataattaaaggaaaaaaaaaaccctttaaatatactt
tgagacatctttaaaaaaatgttaccaagtctttaatgtattttaaagag
ttttagtgttcttagctgtcagtaaaattccagcataaattttatattta
ctatataaattactatagtacattcttggatttaatgagacgcccagtgt
ctcctttatacttcctaagtcctgtgggctgtgtgcttttcagtttcttt
ttttcagtcaagaagatggtgtgtcacctttactttgtcttgtgttgtac
agttactgtatgtttgtgtatttgaagtttgagtgcttataacctcatat
gaagatgcactattaccatccagtctctggacttgtttaattaaaaaaaa
aaaaaaagttaaaccatttcgatcagtttgatgtattacttgtagtataa
atccacattcaaatcatagcctttttttttattcaaaagacatcctttga
ttaagaaataagtttagttataaagatagcaagggaatgtggtagtttga
aagttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78946519_78947576
seq2: B6Ng01-034K02.g_69_1125

seq1  GAATTCATTATCTTCTAGGTGAACCATGATTATAATAATTGTTATGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTTCTAGGTGAACCATGATTATAATAATTGTTATGACTT  50

seq1  AGCATAAAATCTTTAGTTGTCCAATGATTCAGAAAATTAATAAAATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAATCTTTAGTTGTCCAATGATTCAGAAAATTAATAAAATGAGA  100

seq1  CAGGTAAGATTAATGCATTTTGAAAATCAGCTCATGTTGGAAACACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGATTAATGCATTTTGAAAATCAGCTCATGTTGGAAACACAAAT  150

seq1  GTAGTAGAAATTTTAAAACCACGCATATTTAATTGAGCATGTCAACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGAAATTTTAAAACCACGCATATTTAATTGAGCATGTCAACCAGG  200

seq1  GCATTACAATTTGGTTTGGGCTGTTTTCAAAGCATCCATGTATTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAATTTGGTTTGGGCTGTTTTCAAAGCATCCATGTATTTTTAAT  250

seq1  ATGGCTTTGTACTTGGAATTTACTTATTTTGGTAAATATTATATTTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTGTACTTGGAATTTACTTATTTTGGTAAATATTATATTTTACC  300

seq1  TTAAGCTTTAAGGACATGTGTTCATAACCTTGTATTGGGGTCCTTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTTAAGGACATGTGTTCATAACCTTGTATTGGGGTCCTTCCTGG  350

seq1  GCTATCACTGAACACTAAGTTTATTTTTCTTTTGTAGGCATAATTCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCACTGAACACTAAGTTTATTTTTCTTTTGTAGGCATAATTCCCAA  400

seq1  TCTAATCTATGTTATTATACCAACGATTCCGCTGCTCTTACTGATACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTATGTTATTATACCAACGATTCCGCTGCTCTTACTGATACTGG  450

seq1  TTGCTTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAGGTAAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGGAACCTGCTGTTTCCAGATGTTGCATAAAAGGTAAAAAACA  500

seq1  TATTGCTGTCCAGATAATTAAAGGAAAAAAAAAACCCTTTAAATATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTCCAGATAATTAAAGGAAAAAAAAAACCCTTTAAATATACTT  550

seq1  TGAGACATCTTTAAAAAAATGTTACCAAGTCTTTAATGTATTTTAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCTTTAAAAAAATGTTACCAAGTCTTTAATGTATTTTAAAGAG  600

seq1  TTTTAGTGTTCTTAGCTGTCAGTAAAATTCCAGCATAAATTTTATATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTCTTAGCTGTCAGTAAAATTCCAGCATAAATTTTATATTTA  650

seq1  CTATATAAATTACTATAGTACATTCTTGGATTTAATGAGACGCCCAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAATTACTATAGTACATTCTTGGATTTAATGAGACGCCCAGTGT  700

seq1  CTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTTTCAGTTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTATACTTCCTAAGTCCTGTGGGCTGTGTGCTTTTCAGTTTCTTT  750

seq1  TTTTCAGTCAGGAAGATGGTGTGTCACCTTTAC-TTGTCTTGTGTTGTAC  799
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TTTTCAGTCAAGAAGATGGTGTGTCACCTTTACTTTGTCTTGTGTTGTAC  800

seq1  AGTTACTGTATG-TTGTGTATTTGAAGTTTGAGTGCTTATAACCTCATAT  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGTATGTTTGTGTATTTGAAGTTTGAGTGCTTATAACCTCATAT  850

seq1  G-AGATGCACTA-TACCATCCAGTCTCTGGAC-TGGTAAATTAAAAAAAA  895
      | |||||||||| ||||||||||||||||||| || | ||||||||||||
seq2  GAAGATGCACTATTACCATCCAGTCTCTGGACTTGTTTAATTAAAAAAAA  900

seq1  AAAAAAAGTTAAACCA-TTCGATCAGTTTGAAGGTATACTTGTAGTATAA  944
      |||||||||||||||| |||||||||||||| |   ||||||||||||||
seq2  AAAAAAAGTTAAACCATTTCGATCAGTTTGATGTATTACTTGTAGTATAA  950

seq1  ATCCAACATTCAAATCATAGCCTTTTTTTTTTATTTCAAAAAGACATCTT  994
      |||| ||||||||||||||||| ||||||||||||   |||||||||| |
seq2  ATCC-ACATTCAAATCATAGCC-TTTTTTTTTATT--CAAAAGACATCCT  996

seq1  TAGATTAGGAAATTAAGTATAGTTATAAAGATAGCAAGGTGAGTGTGGTA  1044
      | ||||| |||| ||||| |||||||||||||||||||| || |||||||
seq2  TTGATTAAGAAA-TAAGTTTAGTTATAAAGATAGCAAGG-GAATGTGGTA  1044

seq1  GTTTGAAAGGTTGA  1058
      |||||||| |||||
seq2  GTTTGAAA-GTTGA  1057


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