BAC Information

Click to search

BAC

Clone NameB6Ng01-034M02
Chromosome16 (Build37)
Map Location 72,787,274 - 72,942,565
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M02.bB6Ng01-034M02.g
ACCDH863415DH863416
length874749
definitionDH863415|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M02, 5' end.DH863416|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,787,274 - 72,788,149)(72,941,817 - 72,942,565)
sequence
gaattcactctagttgccaaatgggttaccagaagcacatccaatgttac
atccagatgtagttattatttctataaatcgtattggctgcaaagaaatt
atgtccagaaggataacaaacaccacaatataaccactgttttctgtcca
agggaagttttcttcatcatttttttatgatagtgacaaatgctaccaaa
gcacaggggctttttctcccaaaataaatgtttaaatttatttctcattt
tattgagaaatttataatttgtgttgcctgttaatttagagaatggtaca
gttctcttccaattacagaattttaaaatttattttgtaatcaaggacat
aagccttttgaagaacaatgaagactcttgtctgttagctttttatgaat
tcgttgtgaatttcacatcatgcaccccggtcctactcatctctccatcc
ctttgttcccaccctcccttgcaatgctcccccaaaaggaaagcaatcac
agtgtgaaagctatagcgtgtcacagtgtgtcccacactatacgcctttg
tccacacttctctacctgcagttagttgttcactgcaatgagtcattggg
cctgattcaaggcttatagcttctgccacactatttacactgggtcttca
tgaggattcttctcagaattcctgttgctgccttgggtatgaaaactttt
acaattgattgaacttcccacccctgaatttccccccctcctgtgtctgt
tgccctctcttccccaatatctttcttttttcaagaattttcattcattt
tttttcttctggattgctacccaaaatattcctaggtggcctttcaaggg
aacatggatgtttgggaccctaac
gaattctacagaacctctgtttatgatcagagtatcatctgacttggcaa
tggctggcacctgttttgtttttaacacagatccaggaaaccaggtatca
aaggctaagtggttcctgtgagaagcttgggaggtagaggccggcaggtg
aagagtagggtataaatagagataacaacatagtttccaatgtctgagtg
ttgcagcattcagtccccaagagaaacaggagaagtaagtatcacttagt
tcctattgtgagagaggtgcacaaaaatgggattagattttcttaatggt
tccactcagggagataaaggcgactgcttaggaaatggctggggtgtaga
cgtctacacagttcagcttcctgtgactgatgggacacagtgatggggac
atggtcattttgctgatagagtcacaaattcactctggaaataaaattgt
gacagtaataagagctgctttatcggtgaagttgtgaagagaggagaaag
attaatgacgctatctggtttgccctgtttaagcaatgcgtagctcaagc
aataaaagcttctgcactgaaggcaaaattgggaacgaattagggtttaa
atcctagacagtcttgtccacctttcctttgctgtagtagtactcacaag
ggaaatgccttttgaaaagctatctacataactgccattgaagtaagcaa
ttgacaaatcttataatgtagttacaaaatgatacgagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72787274_72788149
seq2: B6Ng01-034M02.b_46_919

seq1  GAATTCACTCTAGTTGCCAAATGGGTTACCAGAAGCACATCCAATGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGTTGCCAAATGGGTTACCAGAAGCACATCCAATGTTAC  50

seq1  ATCCAGATGTAGTTATTATTTCTATAAATCGTATTGGCTGCAAAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATGTAGTTATTATTTCTATAAATCGTATTGGCTGCAAAGAAATT  100

seq1  ATGTCCAGAAGGATAACAAACACCACAATATAACCACTGTTTTCTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGAAGGATAACAAACACCACAATATAACCACTGTTTTCTGTCCA  150

seq1  AGGGAAGTTTTCTTCATCATTTTTTTATGATAGTGACAAATGCTACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTTTTCTTCATCATTTTTTTATGATAGTGACAAATGCTACCAAA  200

seq1  GCACAGGGGCTTTTTCTCCCAAAATAAATGTTTAAATTTATTTCTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGGCTTTTTCTCCCAAAATAAATGTTTAAATTTATTTCTCATTT  250

seq1  TATTGAGAAATTTATAATTTGTGTTGCCTGTTAATTTAGAGAATGGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAAATTTATAATTTGTGTTGCCTGTTAATTTAGAGAATGGTACA  300

seq1  GTTCTCTTCCAATTACAGAATTTTAAAATTTATTTTGTAATCAAGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTCCAATTACAGAATTTTAAAATTTATTTTGTAATCAAGGACAT  350

seq1  AAGCCTTTTGAAGAACAATGAAGACTCTTGTCTGTTAGCTTTTTATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTTGAAGAACAATGAAGACTCTTGTCTGTTAGCTTTTTATGAAT  400

seq1  TCGTTGTGAATTTCACATCATGCACCCCGGTCCTACTCATCTCTCCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTGAATTTCACATCATGCACCCCGGTCCTACTCATCTCTCCATCC  450

seq1  CTTTGTTCCCACCCTCCCTTGCAATGCTCCCCCAAAAGGAAAGCAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCCCACCCTCCCTTGCAATGCTCCCCCAAAAGGAAAGCAATCAC  500

seq1  AGTGTGAAAGCTATAGCGTGTCACAGTGTGTCCCACACTATACGCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAAGCTATAGCGTGTCACAGTGTGTCCCACACTATACGCCTTTG  550

seq1  TCCACACTTCTCTACCTGCAGTTAGTTGTTCACTGCAATGAGTCATT-GG  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACACTTCTCTACCTGCAGTTAGTTGTTCACTGCAATGAGTCATTGGG  600

seq1  CCTGATTCAAGGCTTATAGCTTCTGCTACACTATTAACACTGGGTCTTCA  649
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CCTGATTCAAGGCTTATAGCTTCTGCCACACTATTTACACTGGGTCTTCA  650

seq1  TGAGGATTCTTCTCAGATTTCCTGTTGCTGCCTTGTGTCATGAAAACTTT  699
      ||||||||||||||||| ||||||||||||||||| || |||||||||||
seq2  TGAGGATTCTTCTCAGAATTCCTGTTGCTGCCTTGGGT-ATGAAAACTTT  699

seq1  TACAATTGATTGTAACTTCCCACCCCTGAGTTCTCCCCCCTCCTGTGTCT  749
      |||||||||||| |||||||||||||||| ||  ||||||||||||||||
seq2  TACAATTGATTG-AACTTCCCACCCCTGAATTTCCCCCCCTCCTGTGTCT  748

seq1  GTTGCCCTCTCTTCCCC-ATATCCTTTCTTTTTTCAAGAATTATCAATCA  798
      ||||||||||||||||| |||| ||||||||||||||||||| ||| |||
seq2  GTTGCCCTCTCTTCCCCAATAT-CTTTCTTTTTTCAAGAATTTTCATTCA  797

seq1  TTTTTTTTCTTCTGGACTTGCTACCCAAAATACTACATAGTTGGCCTTTC  848
      |||||||||||||||| ||||||||||||||| | | ||| |||||||||
seq2  TTTTTTTTCTTCTGGA-TTGCTACCCAAAATA-TTCCTAGGTGGCCTTTC  845

seq1  AGGGCAGCATGGATGTTTGTGA-CCTAAC  876
      | || | |||||||||||| || ||||||
seq2  AAGGGAACATGGATGTTTGGGACCCTAAC  874

seq1: chr16_72941817_72942565
seq2: B6Ng01-034M02.g_70_818 (reverse)

seq1  TCTCTCTCTCTCTCGTATCATTTTGTAACTACATTATAAGATTTGTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCGTATCATTTTGTAACTACATTATAAGATTTGTCAAT  50

seq1  TGCTTACTTCAATGGCAGTTATGTAGATAGCTTTTCAAAAGGCATTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTTCAATGGCAGTTATGTAGATAGCTTTTCAAAAGGCATTTCCC  100

seq1  TTGTGAGTACTACTACAGCAAAGGAAAGGTGGACAAGACTGTCTAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTACTACTACAGCAAAGGAAAGGTGGACAAGACTGTCTAGGATT  150

seq1  TAAACCCTAATTCGTTCCCAATTTTGCCTTCAGTGCAGAAGCTTTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTAATTCGTTCCCAATTTTGCCTTCAGTGCAGAAGCTTTTATTG  200

seq1  CTTGAGCTACGCATTGCTTAAACAGGGCAAACCAGATAGCGTCATTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTACGCATTGCTTAAACAGGGCAAACCAGATAGCGTCATTAATC  250

seq1  TTTCTCCTCTCTTCACAACTTCACCGATAAAGCAGCTCTTATTACTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTCTTCACAACTTCACCGATAAAGCAGCTCTTATTACTGTCA  300

seq1  CAATTTTATTTCCAGAGTGAATTTGTGACTCTATCAGCAAAATGACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATTTCCAGAGTGAATTTGTGACTCTATCAGCAAAATGACCATG  350

seq1  TCCCCATCACTGTGTCCCATCAGTCACAGGAAGCTGAACTGTGTAGACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCACTGTGTCCCATCAGTCACAGGAAGCTGAACTGTGTAGACGT  400

seq1  CTACACCCCAGCCATTTCCTAAGCAGTCGCCTTTATCTCCCTGAGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCCAGCCATTTCCTAAGCAGTCGCCTTTATCTCCCTGAGTGGAA  450

seq1  CCATTAAGAAAATCTAATCCCATTTTTGTGCACCTCTCTCACAATAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGAAAATCTAATCCCATTTTTGTGCACCTCTCTCACAATAGGAA  500

seq1  CTAAGTGATACTTACTTCTCCTGTTTCTCTTGGGGACTGAATGCTGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGATACTTACTTCTCCTGTTTCTCTTGGGGACTGAATGCTGCAAC  550

seq1  ACTCAGACATTGGAAACTATGTTGTTATCTCTATTTATACCCTACTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACATTGGAAACTATGTTGTTATCTCTATTTATACCCTACTCTTC  600

seq1  ACCTGCCGGCCTCTACCTCCCAAGCTTCTCACAGGAACCACTTAGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCGGCCTCTACCTCCCAAGCTTCTCACAGGAACCACTTAGCCTTT  650

seq1  GATACCTGGTTTCCTGGATCTGTGTTAAAAACAAAACAGGTGCCAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGGTTTCCTGGATCTGTGTTAAAAACAAAACAGGTGCCAGCCAT  700

seq1  TGCCAAGTCAGATGATACTCTGATCATAAACAGAGGTTCTGTAGAATTC  749
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCAGATGATACTCTGATCATAAACAGAGGTTCTGTAGAATTC  749