BAC Information

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BAC

Clone NameB6Ng01-035H09
Chromosome16 (Build37)
Map Location 55,405,470 - 55,538,200
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H09.bB6Ng01-035H09.g
ACCDH863917DH863918
length936951
definitionDH863917|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H09, 5' end.DH863918|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,537,243 - 55,538,200)(55,405,470 - 55,406,429)
sequence
gaattctctcgccactgtgataactttagagaaccttatgaggctttatg
tgcacccatgtgctgtgaagaagaggagcatggaggcatggtgcaagcaa
atctgctaatgcatgtaagatagcccgccgtttgcactgctgtcacctaa
ttagaggctttgatttgaaatcagtcccattcagtgagtcccaagggtgc
cgccacttcccccacctatcactgtctcttcagatgtgctagattgttgt
cagagttggattgtacatctggtcctatttaaacacacccttcattcttc
aactttggttctgtttatttatcgtgcaggattgcacctgaccttttgct
tacttacgtttaatgggcttggacttgactttcaattcttctcctatgag
ctgctgctgtaagtaactggggctggtgagatggctcagcagttaagagc
gccaactgctattccaaaggtcctgagttcaaatcccagcaaccacatgg
tggttcacaaccacccgtaatgaaatctgatattgtcttctggagtgtct
gaagacagctacagtgtacttacatataataaataaataaataaataaat
aaatattttttttaaaaaaagaatagtgtaactggaaaggagtggtagat
accactattgtactgtaaagagaagcagtgaagctatgataaagtggaaa
gcataatgatcctattagtcgagagatacatgacatatagacactcaaac
tagtgaagggctacatcattactagtgaatttctataatatcctgtccac
cctggcactagatgagatcagtctctgacagatgcattataggatataaa
tttaaattatcattagcatttctgagttcagattctctatttgagataat
catctaataactagttatattctcataagcttgcaa
gaattctcatctatactcttgtcatacttccacgttttaaaaatgttctt
ttaaaatccttaagatggagagggatctttgagatcctcttgttcaattt
taatgataagaaaattgtcactcagaacaagcgaggaacttgttcaagat
tttgtcatttattagtgtcaggcagaaggcaataaagccagtctccagat
tattgtttttaaaagttcttcccatgacttgttagaattctttggaaacc
cttacctaaaaccagaaaggggtgtctctctggcttattcttgctcagtt
gaaaggtaaatatacatatacattatatgtattatatatgttatataata
catatattatatttcatatgtatcttatatatgatatatattgccctaga
actttataatctttggtatagcctcaccttccccactcagtgctgtagac
agtgatcctgatagaatacagaaaaaacctagcatcatacccttctttgt
ttttttttctttttttattagatatgttctttaattacatttcaaatgct
gtctcaaaagttccctataccctccccccaccctgctcccctacccaccc
actcccacttcttggccctggtgttccccctgtactggggcataaaaaag
tttgtaagaccaaagggcctctcttcccaatgatggccgactaggccatc
ttcttctacatatgcagctagagacacaagctctgggggtactgattagt
tgatattgttgttcccacttatagggttgcagacccttcagctccttggg
tgctttctctaccttctccatggcgtcctgtgttcatcatatagatgact
gtgagcatccacttctgtattggcagcactggcatagcctcacaagagaa
agctatatcaggtccttcagcaaatctgctgcatatgcaataggtctggg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55537243_55538200
seq2: B6Ng01-035H09.b_46_981 (reverse)

seq1  TTGCAAGCTAATGAGAATATAACTAGTTTAATTTAAGAATGATTTAATCC  50
      ||||||||| ||||||||||||||||||  |||  || ||||||  || |
seq2  TTGCAAGCTTATGAGAATATAACTAGTT--ATT--AG-ATGATT--AT-C  42

seq1  TCAAATAGAGAATCTGAACTCAGAAATGCTAAATGATAATTTAAATTTTA  100
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TCAAATAGAGAATCTGAACTCAGAAATGCT-AATGATAATTTAAA-TTTA  90

seq1  TATCCCTATTAATGCATCTTGGTCAGAGACTGATCTCATCTTAGTGCCAG  150
      ||| |||| ||||||||||  ||||||||||||||||||| |||||||||
seq2  TAT-CCTA-TAATGCATCT--GTCAGAGACTGATCTCATC-TAGTGCCAG  135

seq1  GGTGGACAGGGATATTTATAGAAATTCACTAGTAATGATTGTAGCCCTTC  200
      |||||||| ||||| ||||||||||||||||||||||| |||||||||||
seq2  GGTGGACA-GGATA-TTATAGAAATTCACTAGTAATGA-TGTAGCCCTTC  182

seq1  ACTAGTTTGAGTGTCTATATTGTTCATGTATTCTTCTTCGACTAAT-GGA  249
      ||||||||||||||||||||   ||||||| |||   ||||||||| |||
seq2  ACTAGTTTGAGTGTCTATAT--GTCATGTA-TCT--CTCGACTAATAGGA  227

seq1  TCATTATGCTTTCCACTTTATCATAGCTTCACTGCTTCTCCTTACAGTAC  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCATTATGCTTTCCACTTTATCATAGCTTCACTGCTTCTCTTTACAGTAC  277

seq1  AATAGTGGTATCTACCACTCCTTTCCAGTTACACTATTCTTTTTTTAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGTATCTACCACTCCTTTCCAGTTACACTATTCTTTTTTTAAAA  327

seq1  AAAATATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTA  377

seq1  GCTGTCTTCAGACACTCCAGAAGACAATATCAGATTTCATTACGGGTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACTCCAGAAGACAATATCAGATTTCATTACGGGTGGT  427

seq1  TGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAATA  477

seq1  GCAGTTGGCGCTCTTAACTGCTGAGCCATCTCACCAGCCCCAGTTACTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGCGCTCTTAACTGCTGAGCCATCTCACCAGCCCCAGTTACTTA  527

seq1  CAGCAGCAGCTCATAGGAGAAGAATTGAAAGTCAAGTCCAAGCCCATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCTCATAGGAGAAGAATTGAAAGTCAAGTCCAAGCCCATTAA  577

seq1  ACGTAAGTAAGCAAAAGGTCAGGTGCAATCCTGCACGATAAATAAACAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGTAAGCAAAAGGTCAGGTGCAATCCTGCACGATAAATAAACAGA  627

seq1  ACCAAAGTTGAAGAATGAAGGGTGTGTTTAAATAGGACCAGATGTACAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTTGAAGAATGAAGGGTGTGTTTAAATAGGACCAGATGTACAAT  677

seq1  CCAACTCTGACAACAATCTAGCACATCTGAAGAGACAGTGATAGGTGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTGACAACAATCTAGCACATCTGAAGAGACAGTGATAGGTGGGG  727

seq1  GAAGTGGCGGCACCCTTGGGACTCACTGAATGGGACTGATTTCAAATCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCGGCACCCTTGGGACTCACTGAATGGGACTGATTTCAAATCAA  777

seq1  AGCCTCTAATTAGGTGACAGCAGTGCAAACGGCGGGCTATCTTACATGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAATTAGGTGACAGCAGTGCAAACGGCGGGCTATCTTACATGCA  827

seq1  TTAGCAGATTTGCTTGCACCATGCCTCCATGCTCCTCTTCTTCACAGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGATTTGCTTGCACCATGCCTCCATGCTCCTCTTCTTCACAGCAC  877

seq1  ATGGGTGCACATAAAGCCTCATAAGGTTCTCTAAAGTTATCACAGTGGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGCACATAAAGCCTCATAAGGTTCTCTAAAGTTATCACAGTGGCG  927

seq1  AGAGAATTC  958
      |||||||||
seq2  AGAGAATTC  936

seq1: chr16_55405470_55406429
seq2: B6Ng01-035H09.g_67_1017

seq1  GAATTCTCATCTATACTCTTGTCATACTTCCACGTTTTAAAAATGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTATACTCTTGTCATACTTCCACGTTTTAAAAATGTTCTT  50

seq1  TTAAAATCCTTAAGATGGAGAGGGATCTTTGAGATCCTCTTGTTCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCTTAAGATGGAGAGGGATCTTTGAGATCCTCTTGTTCAATTT  100

seq1  TAATGATAAGAAAATTGTCACTCAGAACAAGCGAGGAACTTGTTCAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAAGAAAATTGTCACTCAGAACAAGCGAGGAACTTGTTCAAGAT  150

seq1  TTTGTCATTTATTAGTGTCAGGCAGAAGGCAATAAAGCCAGTCTCCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTATTAGTGTCAGGCAGAAGGCAATAAAGCCAGTCTCCAGAT  200

seq1  TATTGTTTTTAAAAGTTCTTCCCATGACTTGTTAGAATTCTTTGGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTAAAAGTTCTTCCCATGACTTGTTAGAATTCTTTGGAAACC  250

seq1  CTTACCTAAAACCAGAAAGGGGTGTCTCTCTGGCTTATTCTTGCTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAAACCAGAAAGGGGTGTCTCTCTGGCTTATTCTTGCTCAGTT  300

seq1  GAAAGGTAAATATACATATACATTATATGTATTATATATGTTATATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAAATATACATATACATTATATGTATTATATATGTTATATAATA  350

seq1  CATATATTATATTTCATATGTATCTTATATATGATATATATTGCCCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTATATTTCATATGTATCTTATATATGATATATATTGCCCTAGA  400

seq1  ACTTTATAATCTTTGGTATAGCCTCACCTTCCCCACTCAGTGCTGTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAATCTTTGGTATAGCCTCACCTTCCCCACTCAGTGCTGTAGAC  450

seq1  AGTGATCCTGATAGAATACAGAAAAAACCTAGCATCATACCCTTCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTGATAGAATACAGAAAAAACCTAGCATCATACCCTTCTTTGT  500

seq1  TTTTTTTTCTTTTTTTATTAGATATGTTCTTTAATTACATTTCAAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTTTATTAGATATGTTCTTTAATTACATTTCAAATGCT  550

seq1  GTCTCAAAAGTTCCCTATACCCTCCCCCCACCCTGCTCCCCTACCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAGTTCCCTATACCCTCCCCCCACCCTGCTCCCCTACCCACCC  600

seq1  ACTCCCACTTCTTGGCCCTGGTGTTCCCCCTGTACTGGGGCAT-ATAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  ACTCCCACTTCTTGGCCCTGGTGTTCCCCCTGTACTGGGGCATAAAAAAG  650

seq1  TTTGTAAGACCAAAGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGACCAAAGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATC  700

seq1  TTCTTCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGATTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGATTAGT  750

seq1  TGATATTGTTGTT-CCACTTATAGGGTTGCAGACCCCTTCAGCTCCTTGG  798
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TGATATTGTTGTTCCCACTTATAGGGTTGCAGA-CCCTTCAGCTCCTTGG  799

seq1  GTGCTTTCTCTACCTTCTCCATTGGCGTCCTGTGTTCCATCATATAGATG  848
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GTGCTTTCTCTACCTTCTCCA-TGGCGTCCTGTGTT-CATCATATAGATG  847

seq1  ACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAA  898
      |||||||||||||||||||||||| ||   ||||||||||||||||||||
seq2  ACTGTGAGCATCCACTTCTGTATTGGC--AGCACTGGCATAGCCTCACAA  895

seq1  GAGACAGCTATATCAGGGTCCCTTCAGCAAAATCTTGCTGGCATATGCAA  948
      |||| ||||||||||||   |||||||| ||||| |||| ||||||||||
seq2  GAGAAAGCTATATCAGG--TCCTTCAGC-AAATC-TGCT-GCATATGCAA  940

seq1  TAGTGTCTGGGT  960
      ||| ||||||||
seq2  TAG-GTCTGGGT  951