BAC Information

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BAC

Clone NameB6Ng01-035M17
Chromosome16 (Build37)
Map Location 49,208,458 - 49,408,006
singlet/doubletdoublet
Overlap gene1700026J12Rik, LOC386061
Upstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15
Downstream geneEG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M17.bB6Ng01-035M17.g
ACCDH864167DH864168
length701537
definitionDH864167|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M17, 5' end.DH864168|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,407,318 - 49,408,006)(49,208,458 - 49,209,227)
sequence
gaattcactattatttccacttaaaatcctttccttgaagactctgcctg
cagcaaatcccacgtgttatactcatgcaacatagaatacacctctttta
aattgacccatgccttgtttgctaatttcatggagtcatctattgttctc
aagtgggagacaaaattaaaaaataaagaagcacctttataaaattatgg
gttttttttttacatgtatttgggtatatgcacatgtgaacacaggggac
tgtggaggtcttaaatcctcccagagctagagatatggttggttgtgaac
taccttaaacaagaggaggaaattgaacccagcttacctacaagagtgaa
acagttcttttaagcaccaagccatctcttctgcaccacaaatggctttt
tgttagcaagggcctttttccaactttgaatctaagtgacttcattagag
gttgtccttgtttatttctctgctgctgtgatcaaacaccctgacaaaaa
gcaattgtttttcttatatatgacagaactttattgggggcaaacccaca
gcaagagcctcacagcaaaaacaataggagaatgcagctttaatggtttg
gcttcaccgtgcctggcttatataggggactacctgccctaggggcacca
ttgcctacaattaaaatgcccctttccccctatcagtcattaatcaagga
c
acactctcacacacacacacacacacacacacacacacacacacacacac
acgctccaggcacaagcttaggtcattcacagataggctgacaggtctgg
atcacgaggagctgtccaggcagcccatgcatgcagcctcattgcgcatg
ctcgggcaaggcagtaaacaagtgggtttcacggggcctgcagccacacc
tgcttcccgcatctaactacaaaatgtaaaatagtggtctactattattg
ttgttgttgttgctgctgctggtgtgatggtggtggtattgttattacct
gggaaatatccttcatagattttaccttcatcttcagactcatcccccag
atccagagccctttctgcacatggactgagaggctcacagcattggcctc
tatcagagtatctctttcctttggctcacagtctcaggttccttggggtg
tttgttcttccagctctatcccctttaaaggtcacgtttggtctggctga
ttttcttttactgaatggtcactggcctacctagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49407318_49408006
seq2: B6Ng01-035M17.b_42_742 (reverse)

seq1  GTCCTTGATTAATGACTGATAGGGGG-AAGGGGCATTCT-ACTGTAGGCA  48
      |||||||||||||||||||||||||| |||||||||| | | ||||||||
seq2  GTCCTTGATTAATGACTGATAGGGGGAAAGGGGCATTTTAATTGTAGGCA  50

seq1  GTGCTG-CCCTA-GGCAGGTAGT-CCCTATATAAG-CAAGCACGCTGA--  92
       || || ||||| |||||||||| ||||||||||| || ||||| |||  
seq2  ATGGTGCCCCTAGGGCAGGTAGTCCCCTATATAAGCCAGGCACGGTGAAG  100

seq1  GCAAACCATT-AAGCTGCATTCTCCTATTGTTTCTGCTGTGA-GCTCTTG  140
       ||||||||| |||||||||||||||||||||| |||||||| |||||||
seq2  CCAAACCATTAAAGCTGCATTCTCCTATTGTTTTTGCTGTGAGGCTCTTG  150

seq1  CTGT-GGTTTG-CCCCAATAAAGTTCTGTCATATATAAGAAAAACAATTG  188
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTTGCCCCCAATAAAGTTCTGTCATATATAAGAAAAACAATTG  200

seq1  CTTTTTGTCAGGGTGTTTGATCACAGCAGCAGAGAAATAAACAAGGACAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCAGGGTGTTTGATCACAGCAGCAGAGAAATAAACAAGGACAA  250

seq1  CCTCTAATGAAGTCACTTAGATTCAAAGTTGGAAAAAGGCCCTTGCTAAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATGAAGTCACTTAGATTCAAAGTTGGAAAAAGGCCCTTGCTAAC  300

seq1  AAAAAGCCATTTGTGGTGCAGAAGAGATGGCTTGGTGCTTAAAAGAACTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCATTTGTGGTGCAGAAGAGATGGCTTGGTGCTTAAAAGAACTG  350

seq1  TTTCACTCTTGTAGGTAAGCTGGGTTCAATTTCCTCCTCTTGTTTAAGGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTTGTAGGTAAGCTGGGTTCAATTTCCTCCTCTTGTTTAAGGT  400

seq1  AGTTCACAACCAACCATATCTCTAGCTCTGGGAGGATTTAAGACCTCCAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAACCAACCATATCTCTAGCTCTGGGAGGATTTAAGACCTCCAC  450

seq1  AGTCCCCTGTGTTCACATGTGCATATACCCAAATACATGTAAAAAAAAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTGTGTTCACATGTGCATATACCCAAATACATGTAAAAAAAAAA  500

seq1  CCCATAATTTTATAAAGGTGCTTCTTTATTTTTTAATTTTGTCTCCCACT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATTTTATAAAGGTGCTTCTTTATTTTTTAATTTTGTCTCCCACT  550

seq1  TGAGAACAATAGATGACTCCATGAAATTAGCAAACAAGGCATGGGTCAAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAATAGATGACTCCATGAAATTAGCAAACAAGGCATGGGTCAAT  600

seq1  TTAAAAGAGGTGTATTCTATGTTGCATGAGTATAACACGTGGGATTTGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGGTGTATTCTATGTTGCATGAGTATAACACGTGGGATTTGCT  650

seq1  GCAGGCAGAGTCTTCAAGGAAAGGATTTTAAGTGGAAATAATAGTGAATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGAGTCTTCAAGGAAAGGATTTTAAGTGGAAATAATAGTGAATT  700

seq1  C  689
      |
seq2  C  701

seq1: chr16_49208458_49209227
seq2: B6Ng01-035M17.g_68_610

seq1  GAATTCACACACACACACACACACACACACACACACACACACACACACAC  50
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTCACACACACACACACACACACACACACACACACACAC  50

seq1  ACACACACGCTCCAGGCACAAGCTTAGGTCATTCACAGATAGGCTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCTCCAGGCACAAGCTTAGGTCATTCACAGATAGGCTGACAG  100

seq1  GTCTGGATCACGAGGAGCTGTCCAGGCAGCCCATGCATGCAGCCTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATCACGAGGAGCTGTCCAGGCAGCCCATGCATGCAGCCTCATTG  150

seq1  CGCATGCTCGGGCAAGGCAGTAAACAAGTGGGTTTCACGGGGCCTGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCTCGGGCAAGGCAGTAAACAAGTGGGTTTCACGGGGCCTGCAGC  200

seq1  CACACCTGCTTCCCGCATCTAACTACAAAATGTAGAATAGTGGTCTACTA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACACCTGCTTCCCGCATCTAACTACAAAATGTAAAATAGTGGTCTACTA  250

seq1  TTATTGTTGTTGTTGTTGCTGCTGCTGGTGTGATGGTGGTGGTATTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTTGTTGTTGCTGCTGCTGGTGTGATGGTGGTGGTATTGTTA  300

seq1  TTACCTGGGAAATATCCTTCATAGATTTTACCTTCATCTTCAGACTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGGAAATATCCTTCATAGATTTTACCTTCATCTTCAGACTCATC  350

seq1  CCCCAGATCCAGAGCCCTTTCTGCACATGGACTGAGAGGCTCACAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATCCAGAGCCCTTTCTGCACATGGACTGAGAGGCTCACAGCATT  400

seq1  GGCCTCTATCAGAGCATCTCTTTCCTTTGGCTCACAGTCTCAGGTTCCAT  450
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GGCCTCTATCAGAGTATCTCTTTCCTTTGGCTCACAGTCTCAGGTTCCTT  450

seq1  TGGGTG-TTGTTCTTCCAGCTCTTTCCC--TTTAAGGTCACG-TTGGTCT  496
       ||||| |||||||||||||||| ||||  || ||||||||| |||||||
seq2  GGGGTGTTTGTTCTTCCAGCTCTATCCCCTTTAAAGGTCACGTTTGGTCT  500

seq1  GGCTGA-TTTCTTTTACTGAAT-GTCACTGGCCTACC-AGACAATGATGT  543
      |||||| ||||||||||||||| |||||||||||||| ||| |       
seq2  GGCTGATTTTCTTTTACTGAATGGTCACTGGCCTACCTAGATA-------  543

seq1  TTCCATGATTCCCTCAATCCATATTATGGGAACTGCCCCTGATGTCCTTC  593
                                                        
seq2  --------------------------------------------------  543

seq1  TGACATTAAGTTTTAGTCCCCCTGATTCAGGTACTCTAGTCAGTTGAGGA  643
                                                        
seq2  --------------------------------------------------  543

seq1  AGATGGATGCTCTCTCTGTCTTCTGGTCTCACCTTGTAGTTTGCAACAAT  693
                                                        
seq2  --------------------------------------------------  543

seq1  TCATGTGTTTCCTTTTGGACCCTAGCAATAGACTTCTAATATAACTATTC  743
                                                        
seq2  --------------------------------------------------  543

seq1  TTCTTAAGCTGTATATGACAGTAGATA  770
                                 
seq2  ---------------------------  543