BAC Information

Click to search

BAC

Clone NameB6Ng01-035N11
Chromosome16 (Build37)
Map Location 37,919,083 - 38,013,514
singlet/doubletdoublet
Overlap geneGpr156, LOC100043271
Upstream geneGolgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58
Downstream geneLOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N11.bB6Ng01-035N11.g
ACCDH864201DH864202
length1,004670
definitionDH864201|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N11, 5' end.DH864202|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,919,083 - 37,920,093)(38,012,845 - 38,013,514)
sequence
gaattcaagtccctcactttttctaccaacattttactatgagaaatttt
aaagattcccagaagttacatccatttcttttttataaacatttaattat
attattttttttaattatttgttttcactttttgcacgtatgttgttttg
cctgcgtgtgtgtttgtgcagtgcgtgcatgcaatactcacagaaaacag
aagagggcatcagatccctctggaactgaagtggcagcaggttgtgagct
accacgtgggttctgggaacagaatactgttcatcagcaagaacagccag
tgcccttaaccaccggcccactaattattatcttaaaacataaataataa
taataagagtctgagtatgtgatccaggcctggactgccgttaaatcaga
aacttattaagaaataaatatgagaaagatttgggggggggactatgaat
tatatgaatgttattcttctaaatttcccataataggcaacaaatctctt
gatcctttattcctctctctgtctatctgtctctgtctctgtctctctgt
ctccatctctctgcccctctttctctctccctccaaatttaagatagaac
atccggcattcagttaaaaaaacaagagggaagaaggcagactgatgctt
tttcttttactcattcatttgttcgtttgttcactcattcattgcaacaa
agttgtacttatgtagctcggtctagcctccaattcccagtcctcctgcc
tcatcccccaatacagagattataaatgtcttcttaagaagacatttgga
tttatcattccccatgtaaaccctggaaaagatccccctgaagcttaata
aaccccagtcttcatcaaaggtgaccacaatcctgagtgacagatgtcac
atctgttgctaatgtcgttatgtgttcactctgcctggaaaccccccccc
ttcttcacattctgagggaatggccctagcattgtcgccttttgatgccc
gatc
gaattcctttttatctgctcaggatgttctctttacagacaggcaaagag
ttagctcatctgcagaataaaccttgaagttttgatcaggaactattggg
catccagcactgtagacgatgctgtggaaaggcaggggttaaacagcctt
tgccacccagcttctgataacatttgaagaggtgagatatgagtgtctga
aaagttaacaatggaggatttatgtaatagcccaggatcaacaatagagc
tgctttcaggagcctatcaggaatagaagatttattacctaataagtcgg
gacagctggcactagttggaagggaaactgcttcaggctagggtagttca
aggaaggcgagaggggcgaaaggcctcagccaggtggggttgttgtggaa
acagcacagccaatggacaagagcaagaagacttagtaagctgagaattc
tgggagtcaatatggagagccccagactccacgtcagtgaaactttgtcc
cgagggaaatggagagcaaggaaggcctctcagccccatagaggtgtgag
ctgacactcagctaatgatttaagctacagatggcattcacatggcatgg
ggtttttaatgggtcccttactcttttttgtgctaatatacttacgtggg
gacgggatcagcttggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37919083_37920093
seq2: B6Ng01-035N11.b_46_1049

seq1  GAATTCAAGTCCCTCACTTTTTCTACCAACATTTTACTATGAGAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCCTCACTTTTTCTACCAACATTTTACTATGAGAAATTTT  50

seq1  AAAGATTCCCAGAAGTTACATCCATTTCTTTTTTATAAACATTTAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCCAGAAGTTACATCCATTTCTTTTTTATAAACATTTAATTAT  100

seq1  ATTATTTTTTTTAATTATTTGTTTTCACTTTTTGCACGTATGTTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTTAATTATTTGTTTTCACTTTTTGCACGTATGTTGTTTTG  150

seq1  CCTGCGTGTGTGTTTGTGCAGTGCGTGCATGCAATACTCACAGAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGTGTGTTTGTGCAGTGCGTGCATGCAATACTCACAGAAAACAG  200

seq1  AAGAGGGCATCAGATCCCTCTGGAACTGAAGTGGCAGCAGGTTGTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATCAGATCCCTCTGGAACTGAAGTGGCAGCAGGTTGTGAGCT  250

seq1  ACCACGTGGGTTCTGGGAACAGAATACTGTTCATCAGCAAGAACAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGGGTTCTGGGAACAGAATACTGTTCATCAGCAAGAACAGCCAG  300

seq1  TGCCCTTAACCACCGGCCCACTAATTATTATCTTAAAACATAAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAACCACCGGCCCACTAATTATTATCTTAAAACATAAATAATAA  350

seq1  TAATAAGAGTCTGAGTATGTGATCCAGGCCTGGACTGCCGTTAAATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAGTCTGAGTATGTGATCCAGGCCTGGACTGCCGTTAAATCAGA  400

seq1  AACTTATTAAGAAATAAATATGAGAAAGATTTGGGGGGGGGACTATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTAAGAAATAAATATGAGAAAGATTTGGGGGGGGGACTATGAAT  450

seq1  TATATGAATGTTATTCTTCTAAATTTCCCATAATAGGCAACAAATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATGTTATTCTTCTAAATTTCCCATAATAGGCAACAAATCTCTT  500

seq1  GATCCTTTATTCCTCTCTCTGTCTATCTGTCTCTGTCTCTGTCTCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTATTCCTCTCTCTGTCTATCTGTCTCTGTCTCTGTCTCTCTGT  550

seq1  CTCCATCTCTCTGCCCCTCTTTCTCTCTCCCTCCAAATTTAAGATAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCTCTGCCCCTCTTTCTCTCTCCCTCCAAATTTAAGATAGAAC  600

seq1  ATCCGGCATTCAG-TAAAAAAACAAGAGGGAAGAAGGCAGACTGATGC-T  648
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  ATCCGGCATTCAGTTAAAAAAACAAGAGGGAAGAAGGCAGACTGATGCTT  650

seq1  TTTCTTTTACTCATTCATTTGTTCGTTTGTTCACTCATTCATTGCAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTACTCATTCATTTGTTCGTTTGTTCACTCATTCATTGCAACAA  700

seq1  AGTTGTACTTATGTAGCTCGGTCTAGCCTCCAATTCCCAGTCCTCCTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTTATGTAGCTCGGTCTAGCCTCCAATTCCCAGTCCTCCTGCC  750

seq1  TCATCCCCCAATACAGAGATTATAAATGTCTTCTTAAGAAGACATTTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCCAATACAGAGATTATAAATGTCTTCTTAAGAAGACATTTGGA  800

seq1  TTTATCATTCCCCAGTGTAAAACCCTGGAAGAGCATCCCCCTGACACTTA  848
      |||||||||||||| ||| ||||||||||| || ||||||||||  ||||
seq2  TTTATCATTCCCCA-TGT-AAACCCTGGAAAAG-ATCCCCCTGAAGCTTA  847

seq1  ATAACACCCAGTTCTCCATCAGAGGTGACCACAGTCCTGTGTGACAGAAT  898
      ||||  ||||| ||| ||||| ||||||||||| ||||| ||||||| ||
seq2  ATAAACCCCAG-TCTTCATCAAAGGTGACCACAATCCTGAGTGACAG-AT  895

seq1  GTCACATCTGTTTCCTACTGTCCTTAATGGTTTCACTCTGCCTGAGAACA  948
      |||||||||| || ||| |||| || |||  |||||||||||||  ||| 
seq2  GTCACATCTG-TTGCTAATGTCGTT-ATGTGTTCACTCTGCCTGGAAACC  943

seq1  CCCCCCCTCCTTCTCATTCTTGTGGGAATGTCCCTGGCATTTGTCACCTT  998
      |||||||| |||| ||||| || ||||||| |||| ||| ||||| ||||
seq2  CCCCCCCTTCTTCACATTC-TGAGGGAATGGCCCTAGCA-TTGTCGCCTT  991

seq1  TTGATGCCCGATC  1011
      |||||||||||||
seq2  TTGATGCCCGATC  1004

seq1: chr16_38012845_38013514
seq2: B6Ng01-035N11.g_69_738 (reverse)

seq1  TACCCCAAGCTGATCCCCTCCCCACCTAAGTATATTAGCACAAAAAAGAG  50
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TACCCCAAGCTGATCCCGTCCCCACGTAAGTATATTAGCACAAAAAAGAG  50

seq1  TAAGGGACCCATTAAAAACCCCATGCCATGTGAATGCCATCTGTAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGACCCATTAAAAACCCCATGCCATGTGAATGCCATCTGTAGCTTA  100

seq1  AATCATTAGCTGAGTGTCAGCTCACACCTCTATGGGGCTGAGAGGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAGCTGAGTGTCAGCTCACACCTCTATGGGGCTGAGAGGCCTTC  150

seq1  CTTGCTCTCCATTTCCCTCGGGACAAAGTTTCACTGACCTGGAGTCTGGG  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGCTCTCCATTTCCCTCGGGACAAAGTTTCACTGACGTGGAGTCTGGG  200

seq1  GCTCTCCATATTGACTCCCAGAATTCTCAGCTTACTAAGTCTTCTTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCATATTGACTCCCAGAATTCTCAGCTTACTAAGTCTTCTTGCTC  250

seq1  TTGTCCATTGGCTGTGCTGTTTCCACAACAACCCCACCTGGCTGAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATTGGCTGTGCTGTTTCCACAACAACCCCACCTGGCTGAGGCCT  300

seq1  TTCGCCCCTCTCGCCTTCCTTGAACTACCCTAGCCTGAAGCAGTTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCCCTCTCGCCTTCCTTGAACTACCCTAGCCTGAAGCAGTTTCCCT  350

seq1  TCCAACTAGTGCCAGCTGTCCCGACTTATTAGGTAATAAATCTTCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTAGTGCCAGCTGTCCCGACTTATTAGGTAATAAATCTTCTATTC  400

seq1  CTGATAGGCTCCTGAAAGCAGCTCTATTGTTGATCCTGGGCTATTACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGCTCCTGAAAGCAGCTCTATTGTTGATCCTGGGCTATTACATA  450

seq1  AATCCTCCATTGTTAACTTTTCAGACACTCATATCTCACCTCTTCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCATTGTTAACTTTTCAGACACTCATATCTCACCTCTTCAAATG  500

seq1  TTATCAGAAGCTGGGTGGCAAAGGCTGTTTAACCCCTGCCTTTCCACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAAGCTGGGTGGCAAAGGCTGTTTAACCCCTGCCTTTCCACAGC  550

seq1  ATCGTCTACAGTGCTGGATGCCCAATAGTTCCTGATCAAAACTTCAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCTACAGTGCTGGATGCCCAATAGTTCCTGATCAAAACTTCAAGGT  600

seq1  TTATTCTGCAGATGAGCTAACTCTTTGCCTGTCTGTAAAGAGAACATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCAGATGAGCTAACTCTTTGCCTGTCTGTAAAGAGAACATCCT  650

seq1  GAGCAGATAAAAAGGAATTC  670
      ||||||||||||||||||||
seq2  GAGCAGATAAAAAGGAATTC  670