BAC Information

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BAC

Clone NameB6Ng01-036E13
Chromosome16 (Build37)4 (Build37)
Map Location 48,277,930 - 48,278,05996,716,929 - 96,717,870
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628776, EG667741, EG639644, EG637273
Downstream geneDppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E13.bB6Ng01-036E13.g
ACCDH864510DH864511
length817935
definitionDH864510|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E13, 5' end.DH864511|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,277,930 - 48,278,059)(96,716,929 - 96,717,870)
sequence
gaattctcaaaatcattaaaatatacaaatctcccatatgatatgcctaa
actagtcttcggcatattcccaaaggattcaacatgttttcttaagatac
ttgatcactcgccaggcactggtggcgcatgcctttaatcccagcacttg
ggaagcagaggcaggcagatttctgagtttgaggccagcatggtctacag
agtgagttctaggacagccagggttacacagagaaaccctgtcttgctac
tctattcacaaaatctaggaaatgggaaaaattaaatttcttacaaccaa
atgaatgttgaatgaaatcatgatacatatatattataaaatactcttca
gtggtaaagaaaaaaatgaaatcaagaactttacacgtagttgaatggaa
ctagaaaagatcatatcataaaaagtgagataacttagacacagaaaatc
aaatgtcacatgttctcacttacttagtattcttagcttcaaatgatcaa
ctgtgcatatgtacacttcagttacttcagaaaacaggagagaaaaatag
ggccactgccaatatagagagattgccatctatggagaggggaattcaga
atacaatcaggatctgatctgtgaaaggggaaaggggagcttagagaggg
tatgggacataaaatcagaagaagatggaaagagaacaaatgggaatagc
agaggataagtttacctgataggtgaaatgggaaaatgaaggtctcttag
ggaagggggctaaggtaaataaaggagaagggaagtagtaaaataacaat
gtgcatggctgaaaaaa
gaattcataaaagcaagaaatggggcccagaacacaaaaggtgacatgag
agctgggattcaatatcatttttttttacttccacccatttctgatttct
aaataatctgcctttatgcctcctcaaaatcttgaccttattctctgtgt
tgtaatctattaccaggaaaacaaaagatgaagttttttgcacagagtgt
agccagcatctggaagagaatgcctggccaagcttctacaaacagacagg
ctttgcaatcctgagcacaaagtaggcagctccgtgcagacttcatgctt
ctgcggttaaaatctggaggttctttctgtcctatatttctgtctaggcc
attcagaaagctatatttcctttctgttatacaaactttgaagttgcata
ctttacaaagcggactgcatgataaatacatgacctcattggagctggaa
caggaatctacctttctattaactgtatttatattaaatatttatcatga
ttgtgtagtagaggactaaactaagtaagacaaaaggatgtgatatccct
ggtctaaaattaagaaactagttgagcaactgtgactagggaggagagta
tgggtaaagggtgtaattaaagacacggtatgctctggaggtgctttgag
aaggcagaacatagccatcaaattccaagcgggtggagggagcagtcgta
aatcaagagccctggatcaaatgaaatgggggacagtggagagcacaagc
agacttcgtgcttcacggaaaagtcattgctccttccaattaagcaggta
agagtaaggagttcaaccacgccccaatttgctaagatctatgagaccac
catctagctcctaagctactttacttgaagtcttcatgtagggttatata
atcatgaacttctgtagtcatttgcctacaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48277930_48278059
seq2: B6Ng01-036E13.b_156_285 (reverse)

seq1  AGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAG  50
      |||||||||||||||||||| | ||||||||||| |||||||||||||||
seq2  AGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTAGAACTCACTCTGTAG  50

seq1  ACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  100
      |||| ||||||||| ||||||||||||||||||||||||| |||||||||
seq2  ACCATGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTG  100

seq1  CTGGGATTAAAGGCATGTGCCACCACTGCC  130
      ||||||||||||||||| ||||||| ||||
seq2  CTGGGATTAAAGGCATGCGCCACCAGTGCC  130

seq1: chr4_96716929_96717870
seq2: B6Ng01-036E13.g_68_1002

seq1  GAATTCATAAAAGCAAGAAATGGGGCCCAGAACACAAAAGGTGACATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAAGCAAGAAATGGGGCCCAGAACACAAAAGGTGACATGAG  50

seq1  AGCTGGGATTCAATATCATTTTTTTTTACTTCCACCCATTTCTGATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGATTCAATATCATTTTTTTTTACTTCCACCCATTTCTGATTTCT  100

seq1  AAATAATCTGCCTTTATGCCTCCTCAAAATCTTGACCTTATTCTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTGCCTTTATGCCTCCTCAAAATCTTGACCTTATTCTCTGTGT  150

seq1  TGTAATCTATTACCAGGAAAACAAAAGATGAAGTTTTTTGCACAGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTATTACCAGGAAAACAAAAGATGAAGTTTTTTGCACAGAGTGT  200

seq1  AGCCAGCATCTGGAAGAGAATGCCTGGCCAAGCTTCTACAAACAGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCATCTGGAAGAGAATGCCTGGCCAAGCTTCTACAAACAGACAGG  250

seq1  CTTTGCAATCCTGAGCACAAAGTAGGCAGCTCCGTGCAGACTTCATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAATCCTGAGCACAAAGTAGGCAGCTCCGTGCAGACTTCATGCTT  300

seq1  CTGCGGTTAAAATCTGGAGGTTCTTTCTGTCCTATATTTCTGTCTAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTTAAAATCTGGAGGTTCTTTCTGTCCTATATTTCTGTCTAGGCC  350

seq1  ATTCAGAAAGCTATATTTCCTTTCTGTTATACAAACTTTGAAGTTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAGCTATATTTCCTTTCTGTTATACAAACTTTGAAGTTGCATA  400

seq1  CTTTACAAAGCGGACTGCATGATAAATACATGACCTCATTGGAGCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAGCGGACTGCATGATAAATACATGACCTCATTGGAGCTGGAA  450

seq1  CAGGAATCTACCTTTCTATTAACTGTATTTATATTAAATATTTATCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCTACCTTTCTATTAACTGTATTTATATTAAATATTTATCATGA  500

seq1  TTGTGTAGTAGAGGACTAAACTAAGTAAGACAAAAGGATGTGATATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGTAGAGGACTAAACTAAGTAAGACAAAAGGATGTGATATCCCT  550

seq1  GGTCTAAAATTAAGAAACTAGTTGAGCAACTGTGACTAGGGAGGAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAATTAAGAAACTAGTTGAGCAACTGTGACTAGGGAGGAGAGTA  600

seq1  TGGGTAAAGGGTGTAATTAAAGACACGGTATGCTCTGGAGGTGC-TTGAG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGGTAAAGGGTGTAATTAAAGACACGGTATGCTCTGGAGGTGCTTTGAG  650

seq1  AA-GCAGAACATAGCCATCAAATTCCAAGCGGGTGGAGGGAGCAGTCGTA  698
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAACATAGCCATCAAATTCCAAGCGGGTGGAGGGAGCAGTCGTA  700

seq1  AATCAAGAGCCCTGGATCAAATGAAAT-GGGGACAGTGGAGAGCACAAGC  747
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATCAAGAGCCCTGGATCAAATGAAATGGGGGACAGTGGAGAGCACAAGC  750

seq1  AGAC-TCGTGCTCCACGGAAAAGTCATTGCTCACTCCAATTAAGCAAGGT  796
      |||| ||||||| |||||||||||||||||||  ||||||||||| ||||
seq2  AGACTTCGTGCTTCACGGAAAAGTCATTGCTCCTTCCAATTAAGC-AGGT  799

seq1  AGGAGTAAGGAGTTCAGACACGCCCCATTTTGCTTAAGATTCTAATTGAG  846
      | ||||||||||||||  ||||||||| ||||| ||||| ||||  ||||
seq2  AAGAGTAAGGAGTTCAACCACGCCCCAATTTGC-TAAGA-TCTA--TGAG  845

seq1  ACCCACATCCTAGCTCTAAAGCTACTTTTACTTTAAAGTCCTCATGTAGG  896
      |||  ||| |||||||  ||||||| ||||| || ||||| |||||||||
seq2  ACCACCAT-CTAGCTCCTAAGCTAC-TTTAC-TTGAAGTCTTCATGTAGG  892

seq1  TTAAAATAATTCATTAGACTTCTGTTAGTCATTGACCTACAAATGC  942
       | | |||| |||| | ||||||| ||||||||  |||||||||||
seq2  GTTATATAA-TCATGA-ACTTCTG-TAGTCATTTGCCTACAAATGC  935