BAC Information

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BAC

Clone NameB6Ng01-036F16
Chromosome16 (Build37)13 (Build37)
Map Location 77,593,245 - 77,593,983118,841,339 - 118,842,052
singlet/doubletsingletsinglet
Overlap gene2810055G20Rik
Upstream gene1700063K16Rik, LOC665120, Usp25
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F16.bB6Ng01-036F16.g
ACCDH864555DH864556
length7401,003
definitionDH864555|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F16, 5' end.DH864556|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,593,245 - 77,593,983)(118,841,339 - 118,842,052)
sequence
gaattcactccactcttgttaggaagtatggaaatgtttgtacatgggaa
aaaaatctcattgcatgctagaatggaaattcaccagggagggggaagct
gttcattttattgcctaagagctgttgatatgctccctgaatctttcaaa
ggcatctttcatgccacacaggcaacccgcagccagtcagagaacagaaa
gaacacttctcacatgtgtcaatctccgaaaacttgcatagcagctgtgc
taggtagtgatggggattatcgcaagacccaattgcaggggtttgcctgc
tggaagagacaccccatcctctcaagggaccactttgttggagatggtag
caataatgcatctctgttgctagtggatattgtggccatgtagcacaaaa
ttggtgctagataaaaatcagaaagtaataaaaatgcaaaaaggaaaact
gggaggtttggttttgtttcaaagtcttaaagtgggagaataaaacaaat
gtgctaggcttgttgcgtttacaaaaaaaaaaaaaaaagaaagaaagaca
agaaaacagatatgcctttaatgacgaaaactcgcagggcagggcattca
gtcttccggtttgagaaccattcgggtgcgttgagaaacaaagttgcaaa
gtaagcatgttcagaccttttatttgctaattttttgtaggaaagatctc
tctctctctctctctctctctctctctctctctctctctc
gaattccacacccctaagccccttagcccataaaatccccctagcttccg
agcctcgtggccaacatccattatctcctgtgtggggttcatgtcggtct
ggagctccgtcattaaactacctcatgtaattacatcagggcagtctatt
catgattctttggatgcacaccgaatcaggaattgaatgggggtttcccc
actaggttctatcatttggaggccccagcgagatctgtgtgacacccagg
aacctcgaaagaccgcttgaaggtacatttgtttgtgtgagtcttgtatg
ttgtctgttgtctaagtgtgacactgctgaatttacatcttggtttttca
gttctaagattgtgggttcgagtcccaccttgtgtcttggtttttcagtt
ctgagattgtgggttcgagtcccacctggtttcccagttctggtattctg
tattctggcagcagccactgtggaccgtgaggacctagtggctgcggggg
aaaaacacgttctaaggccccgcaggctgaaaccctacaaaaagtgccca
gggtgagagacagtgaaaaagtctgactgtcatctggcagagtgagaaaa
ataaggtgctttttctgccagaaagggagttgatgtagaatctgtcccct
gtcatgaagttgagtttggctggttgtacaagaaaggcatagacgagtgt
ggttagatatactggtgtcttttttctctgttgctgtcttgttttgtttg
tggttttgtcatgggacacagacacacacatcggaggtaaagtgaaatcc
ttccctgcatgtctgtcttgtctgttcactgtgtgtcctccatagaacaa
cttctgattctgtttgcttttggttgtctgtttcagtctgtttagtccca
agggtgactaatatctggtttgtttaggccgttctcaggtgctggtgctc
caatgagagaagtccattggtggtgcagtacagtgaatgtgcaaatgttg
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77593245_77593983
seq2: B6Ng01-036F16.b_47_786

seq1  GAATTCACTCCACTCTTGTTAGGAAGTATGGAAATGTTTGTACATGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCACTCTTGTTAGGAAGTATGGAAATGTTTGTACATGGGAA  50

seq1  AAAAATCTCATTGCATGCTAGAATGGAAATTCACCAGGGAGGGGGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCATTGCATGCTAGAATGGAAATTCACCAGGGAGGGGGAAGCT  100

seq1  GTTCATTTTATTGCCTAAGAGCTGTTGATATGCTCCCTGAATCTTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTATTGCCTAAGAGCTGTTGATATGCTCCCTGAATCTTTCAAA  150

seq1  GGCATCTTTCATGCCACACAGGCAACCCGCAGCCAGTCAGAGAACAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTTCATGCCACACAGGCAACCCGCAGCCAGTCAGAGAACAGAAA  200

seq1  GAACACTTCTCACATGTGTCAATCTCCGAAAACTTGCATAGCAGCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTCTCACATGTGTCAATCTCCGAAAACTTGCATAGCAGCTGTGC  250

seq1  TAGGTAGTGATGGGGATTATCGCAAGACCCAATTGCAGGGGTTTGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTGATGGGGATTATCGCAAGACCCAATTGCAGGGGTTTGCCTGC  300

seq1  TGGAAGAGACACCCCATCCTCTCAAGGGACCACTTTGTTGGAGATGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGACACCCCATCCTCTCAAGGGACCACTTTGTTGGAGATGGTAG  350

seq1  CAATAATGCATCTCTGTTGCTAGTGGATATTGTGGCCATGTAGCACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGCATCTCTGTTGCTAGTGGATATTGTGGCCATGTAGCACAAAA  400

seq1  TTGGTGCTAGATAAAAATCAGAAAGTAATAAAAATGCAAAAAGGAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTAGATAAAAATCAGAAAGTAATAAAAATGCAAAAAGGAAAACT  450

seq1  GGGAGGTTTGGTTTTGTTTCAAAGTCTTAAAGTGGGAGAATAAAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTTGGTTTTGTTTCAAAGTCTTAAAGTGGGAGAATAAAACAAAT  500

seq1  GTGCTAGGCTTGTTGCGTTTACAAAAAAAAAAAAAAAAGAAAGAAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGCTTGTTGCGTTTACAAAAAAAAAAAAAAAAGAAAGAAAGACA  550

seq1  AGAAAACAGATATGCCTTTAATGACGAAAACTCGCAGGGCAGGGCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGATATGCCTTTAATGACGAAAACTCGCAGGGCAGGGCATTCA  600

seq1  GTCTTCCGGTTTGAGAACCATTCGGGTGCGTTGAGAAACAAAGTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCGGTTTGAGAACCATTCGGGTGCGTTGAGAAACAAAGTTGCAAA  650

seq1  GTAAGCATGTTCAGACC-TTTATTTGCTAATTTTTTGTAGGAAAGATCTC  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAAGCATGTTCAGACCTTTTATTTGCTAATTTTTTGTAGGAAAGATCTC  700

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  739
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  740

seq1: chr13_118841339_118842052
seq2: B6Ng01-036F16.g_348_1073

seq1  TTTGTTAGTGTGAGTCTTGCATGTTGTCTGTTGTCTAAGTGTCTAAGTGT  50
      |||||| |||||||||||| |||||||||||        |||||||||||
seq2  TTTGTTTGTGTGAGTCTTGTATGTTGTCTGT--------TGTCTAAGTGT  42

seq1  GGCACTGCTGAATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTT  100
      | |||||||||||||   |||||||||||||||||| |||||||||||| 
seq2  GACACTGCTGAATTTACATCTTGGTTTTTCAGTTCTAAGATTGTGGGTTC  92

seq1  GAGTCCCACCTTATGTCTTGGTTTTT------------------------  126
      |||||||||||| |||||||||||||                        
seq2  GAGTCCCACCTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTCGAG  142

seq1  ---------------CAGTTCTGGTATTCTGTATTCTGGCAGCTGCCACT  161
                     |||||||||||||||||||||||||||| ||||||
seq2  TCCCACCTGGTTTCCCAGTTCTGGTATTCTGTATTCTGGCAGCAGCCACT  192

seq1  GTGGACCATGAGGACCTAGTGGCT--GTGGGAGGAAGATGTTCTAAGG--  207
      ||||||| ||||||||||||||||  | ||||  || | |||||||||  
seq2  GTGGACCGTGAGGACCTAGTGGCTGCGGGGGAAAAACACGTTCTAAGGCC  242

seq1  ---------GTGACTCTGGAGGAAGTGCCCAGGGTGAGGGGCAGTCAGAA  248
               |  || ||  |  |||||||||||||||| | |||| | ||
seq2  CCGCAGGCTGAAACCCTACAAAAAGTGCCCAGGGTGAGAGACAGTGAAAA  292

seq1  AGTTCTGACTGTCATCTGGCAGAGTGAGAAAAATAACGTGCTTTTTCTGC  298
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AG-TCTGACTGTCATCTGGCAGAGTGAGAAAAATAAGGTGCTTTTTCTGC  341

seq1  CAGAAAGGGAGTCGATGTGGAATCTGACCCCCATCAGGAA---GGGTGTC  345
      |||||||||||| ||||| ||||||| ||||  ||| |||   | || | 
seq2  CAGAAAGGGAGTTGATGTAGAATCTGTCCCCTGTCATGAAGTTGAGTTTG  391

seq1  GATG--TGAAACCCGACCCCCGTCAGGAA--GCACGGACGAGTGTGCTTA  391
      | ||  || |             || |||  |||  |||||||||| |||
seq2  GCTGGTTGTA-------------CAAGAAAGGCATAGACGAGTGTGGTTA  428

seq1  GATATTCTGGTGTCTTTTTTTCTCTGTTGCTATCTTGTTTTTGTTTGTGG  441
      ||||| |||||||| |||||||||||||||| ||||| ||||||||||||
seq2  GATATACTGGTGTC-TTTTTTCTCTGTTGCTGTCTTG-TTTTGTTTGTGG  476

seq1  TTTTCGTCATGGGACACAGAAATCGTACATCGGAGGTAAAGTGGAATCCC  491
      |||| ||||||||||||||| | |  ||||||||||||||||| ||||| 
seq2  TTTT-GTCATGGGACACAGACA-CACACATCGGAGGTAAAGTGAAATCCT  524

seq1  TCCCTGTCTGTCTGTCT----TGTTCACGTGTGTGTGCTCCATTAGACCA  537
      ||||||  |||||||||    ||||||| ||||||| ||||| |||| ||
seq2  TCCCTGCATGTCTGTCTTGTCTGTTCAC-TGTGTGTCCTCCA-TAGAACA  572

seq1  CCTTCTGATTCTGTTTTGTTTTTGGTTTGTCTGGTTTCAAGTCTGGTTTT  587
       |||||||||||| |||| |||||| |||||| ||||| ||||||  |||
seq2  ACTTCTGATTCTG-TTTGCTTTTGG-TTGTCT-GTTTC-AGTCTG--TTT  616

seq1  GATCCCAAGGGGTTGACTGGTTATCTTGGTTTGGTTTTAGGCTGGTCTCA  637
        |||||||||  |||||   |||| |||||||  ||||||| | |||||
seq2  AGTCCCAAGGG--TGACT-AATATC-TGGTTTG--TTTAGGCCGTTCTCA  660

seq1  GGTTCTGGGGGCCTTCCCATGGAGAGAGGTCCATTTGGTTGGTCGCAGTG  687
      ||| |||| |  ||  |||  |||||| |||||||  | |||| ||||| 
seq2  GGTGCTGGTG--CT--CCAATGAGAGAAGTCCATT--GGTGGT-GCAGT-  702

seq1  ACAGTGAGACGTGCCAAAATGTTGCAG  714
      ||||||| | ||||  |||||||||||
seq2  ACAGTGA-ATGTGC--AAATGTTGCAG  726