BAC Information

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BAC

Clone NameB6Ng01-036H01
Chromosome16 (Build37)
Map Location 8,325,290 - 8,471,409
singlet/doubletdoublet
Overlap gene4930511J11Rik, BC024814
Upstream geneA2bp1
Downstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036H01.bB6Ng01-036H01.g
ACCDH864616DH864617
length1,029391
definitionDH864616|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H01, 5' end.DH864617|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,470,369 - 8,471,409)(8,325,290 - 8,325,715)
sequence
gaattcttcaagggttacagccactgttattccccaaaccagtctaccgg
ggtggacagaactcccctcctcccaggcaggtggatgcacacccactgga
caatcaaaacttaggagctgggagagggaacgccaggaagctggagggcg
cagggctcagaggtgcaggaaagggctggccacgcgcgcagggcggcgtc
agcggctccagggacctcctccattagcggccagtcactctgaagaagcc
agtcgctaacccggcctctccttcccttcctaatccgagacagagtggga
ctgcctcacccagcacggaaaccgagacgtcccatacagaaagggaaact
gaggctgagggttcagacttcaaggtcgtgtaagcttggctctcaaagcc
aagatgctccctgggttcttcccggtcccgccccctctcccgggctctta
cccgccatgacactggtctgaagtcccacgcggaaccctagccatggggc
tcaggaagccgccatgacggacagcttgcgcaggcgcggtccaagcgccg
gctcgggtcgcgcatgcgcacgcggcggcagccgctagctaacacctgat
gctctcgctcagccctgtggcggccactggaggctcagctgtcacctggt
cggattgctcatatggccgtccagagtggggacgcctctgcacttcggtg
tttggaatccctcctgtaaaaaatttaaatatggctaagaatctcagcgg
tgtagagagcccagcacaagaaaaaaaagttaaataatttgctttaagtg
ttagagtcattaaagatcagagtcctaataagctgtatttaaccattgtt
cctaagtatgcccaggaaacattataggcaaagcagagacaaaaacatac
atgacccacccagtacatgttcggcacgataggatatttatgttagtaga
gtgctatagttatgcatagctagcagtcctgtctgggtatgtactgccca
tcatgctccatccatattttttttttttt

agaaggatcttcaagagacatagcaggggaaatgatttgggataaataaa
gggattggcaagtggtcttggtgacccactgatgctcaacagccagtagt
ggtatcaacttcacccatttcatgatctcctctcaaaggttttcttatgg
tctgatgatttgtaagggccctgacagatcttatattgaaacaccatgct
gtttaagatcccctctgctgatcttgagtcttgaaaggacatctaacacc
attgatagcacacacactgttggcatctatagcaccaattctgatgcatt
taataagtagagcaccctcccccgcttcccagacactgtatgagaacaaa
attcaatcagtctctcctcctcctcctcctccaccaccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_8470369_8471409
seq2: B6Ng01-036H01.b_36_1064 (reverse)

seq1  AAAAAAAAAAAAA---GGATGGAGCAATGATGGGCAGTACCATACCCAGA  47
      |||||||||||||   ||||||||| ||||||||||||| ||||||||||
seq2  AAAAAAAAAAAAATATGGATGGAGC-ATGATGGGCAGTA-CATACCCAGA  48

seq1  CCAGGACTGCTTAGCTATGCATAACTATAGCACTCTACTTAAACATAAAT  97
       ||||||||| ||||||||||||||||||||||||||||  |||||||||
seq2  -CAGGACTGC-TAGCTATGCATAACTATAGCACTCTACT--AACATAAAT  94

seq1  ATCCTATCGGTGCCCGAAACATGTACTTGGGTGGGTCATTGTATGTTTTT  147
      |||||||| |||||   ||||||||| ||||||||||| |||||||||||
seq2  ATCCTATC-GTGCC--GAACATGTAC-TGGGTGGGTCA-TGTATGTTTTT  139

seq1  GTCTTCTGCTTTTGCCTATTAATTGTTTCCTGGGCATACTTAGGAACAAT  197
      ||| ||||| |||||||||  | |||||||||||||||||||||||||||
seq2  GTC-TCTGC-TTTGCCTAT--AATGTTTCCTGGGCATACTTAGGAACAAT  185

seq1  GGTTAAATACAGCTTATTAGGACTCTGATCTTTAATGACTCTAACACTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATACAGCTTATTAGGACTCTGATCTTTAATGACTCTAACACTTA  235

seq1  AAGCAAATTATTTAACTTTTTTTTCTTGTGCTGGGCTCTCTACACCGCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTATTTAACTTTTTTTTCTTGTGCTGGGCTCTCTACACCGCTG  285

seq1  AGATTCTTAGCCATATTTAAATTTTTTACAGGAGGGATTCCAAACACCGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTAGCCATATTTAAATTTTTTACAGGAGGGATTCCAAACACCGA  335

seq1  AGTGCAGAGGCGTCCCCACTCTGGACGGCCATATGAGCAATCCGACCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGGCGTCCCCACTCTGGACGGCCATATGAGCAATCCGACCAGG  385

seq1  TGACAGCTGAGCCTCCAGTGGCCGCCACAGGGCTGAGCGAGAGCATCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTGAGCCTCCAGTGGCCGCCACAGGGCTGAGCGAGAGCATCAGG  435

seq1  TGTTAGCTAGCGGCTGCCGCCGCGTGCGCATGCGCGACCCGAGCCGGCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTAGCGGCTGCCGCCGCGTGCGCATGCGCGACCCGAGCCGGCGC  485

seq1  TTGGACCGCGCCTGCGCAAGCTGTCCGTCATGGCGGCTTCCTGAGCCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCGCGCCTGCGCAAGCTGTCCGTCATGGCGGCTTCCTGAGCCCCA  535

seq1  TGGCTAGGGTTCCGCGTGGGACTTCAGACCAGTGTCATGGCGGGTAAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGGTTCCGCGTGGGACTTCAGACCAGTGTCATGGCGGGTAAGAG  585

seq1  CCCGGGAGAGGGGGCGGGACCGGGAAGAACCCAGGGAGCATCTTGGCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGAGAGGGGGCGGGACCGGGAAGAACCCAGGGAGCATCTTGGCTTT  635

seq1  GAGAGCCAAGCTTACACGACCTTGAAGTCTGAACCCTCAGCCTCAGTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCAAGCTTACACGACCTTGAAGTCTGAACCCTCAGCCTCAGTTTC  685

seq1  CCTTTCTGTATGGGACGTCTCGGTTTCCGTGCTGGGTGAGGCAGTCCCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTATGGGACGTCTCGGTTTCCGTGCTGGGTGAGGCAGTCCCAC  735

seq1  TCTGTCTCGGATTAGGAAGGGAAGGAGAGGCCGGGTTAGCGACTGGCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCGGATTAGGAAGGGAAGGAGAGGCCGGGTTAGCGACTGGCTTC  785

seq1  TTCAGAGTGACTGGCCGCTAATGGAGGAGGTCCCTGGAGCCGCTGACGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGACTGGCCGCTAATGGAGGAGGTCCCTGGAGCCGCTGACGCC  835

seq1  GCCCTGCGCGCGTGGCCAGCCCTTTCCTGCACCTCTGAGCCCTGCGCCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCGCGCGTGGCCAGCCCTTTCCTGCACCTCTGAGCCCTGCGCCCT  885

seq1  CCAGCTTCCTGGCGTTCCCTCTCCCAGCTCCTAAGTTTTGATTGTCCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGGCGTTCCCTCTCCCAGCTCCTAAGTTTTGATTGTCCAGT  935

seq1  GGGTGTGCATCCACCTGCCTGGGAGGAGGGGAGTTCTGTCCACCCCGGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGCATCCACCTGCCTGGGAGGAGGGGAGTTCTGTCCACCCCGGTA  985

seq1  GACTGGTTTGGGGAATAACAGTGGCTGTAACCCTTGAAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTTGGGGAATAACAGTGGCTGTAACCCTTGAAGAATTC  1029


seq1: chr16_8325290_8325715
seq2: B6Ng01-036H01.g_65_461

seq1  GAATTCAGAAGGATCTTCAAGAGACATAGCAGGGGAAATGATTTGGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGATCTTCAAGAGACATAGCAGGGGAAATGATTTGGGATA  50

seq1  AATAAAGGGATTGGCAAGTGGTCTTGGTGACCCACTGATGCTCAACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGGATTGGCAAGTGGTCTTGGTGACCCACTGATGCTCAACAGCC  100

seq1  AGTAGTGGTATCAACTTCACCCATTTCATGATCTCCTCTCAAAGGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGTATCAACTTCACCCATTTCATGATCTCCTCTCAAAGGTTTTC  150

seq1  TTATGGTCTGATGATTTGTAAGGGCCCTGACAGATCTTATATTGAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCTGATGATTTGTAAGGGCCCTGACAGATCTTATATTGAAACAC  200

seq1  CATGCTGTTTAAGATCCCCTCTGCTGATCTTGAGTCTTGAAAGGACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTTTAAGATCCCCTCTGCTGATCTTGAGTCTTGAAAGGACATCT  250

seq1  AACACCATTGATAGCACACACACTGTTGGCATCTATAGCACCAATTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTGATAGCACACACACTGTTGGCATCTATAGCACCAATTCTGA  300

seq1  TGCATTTAATAAGTAGAGCACCCTCCCCCGCTTCCCAGACACTGTATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAATAAGTAGAGCACCCTCCCCCGCTTCCCAGACACTGTATGAG  350

seq1  AACAAAATTCAATCAGTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC  400
      |||||||||||||||||||||||||||||||||||||| || || ||   
seq2  AACAAAATTCAATCAGTCTCTCCTCCTCCTCCTCCTCCACCACCACC---  397

seq1  TCCTCCTCCTCCTCCTCACCACCACC  426
                                
seq2  --------------------------  397


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