BAC Information

Click to search

BAC

Clone NameB6Ng01-036N16
Chromosome16 (Build37)
Map Location 93,026,908 - 93,132,852
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N16.bB6Ng01-036N16.g
ACCDH864898DH864899
length970856
definitionDH864898|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N16, 5' end.DH864899|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,131,876 - 93,132,852)(93,026,908 - 93,027,814)
sequence
gaattccatgatagtcggtcaaagtaaactggtaggcttaattgagctaa
attattttccttctactaaacatgtttaaactcatattggggaaaaaagt
ttggatggctttcccttcagggtatagcgtacatcctgcctctccttacg
tacacaagaaaactgggttaagcttcttatttcccccctctttaagatta
ttcttggcaactctctgggaaaatctgttagcttgtcaagataaatttta
caagaagtatcccaggttatgaaaactatggcaaaatttcccagagataa
aggggctttgcagacccagagtttcagatgtgcttacggctgatatgtat
gtgtgtaccagggagacctgggatatttagaatgtcttggaagctagagg
cagcttccattgctttattttatttttcatgtaatagatcctgtcgtgaa
ggaggatttacagtttgaaaatgtacctggcaaaatgggtgtgctcaaaa
tgttttgagtggtcatgttgtgtgatgctcagaggaccttctgtggactc
ccatctgatatagccatggctaagctacagagtgaggctgggctccttcc
agaaagatctgctctataactttgaaattctccatttgatttatcatgaa
gacttccctcttctgcttcacagaacaggaccttcagtgtaggtgatgtg
tttagacccgtgactctggtagtgtagcctcgtgtactctttctacgaac
aaagccctcttcctctccatctcttcattgcagggaagaaaagccatatt
aggagctgtggcccccatccccagagcctcatttcctaagggttgtaact
actagagagatagactgttcagctctttatgcaaagaccttggaacccct
cataggctatgtgacggtggcagcatgtctcatgggctggccctcttcca
cctgattcttagtctcatga
gaattccagccactgcagtaaggcaagaaaaataaacaaaaaagaattca
aatcgaacaggaagaaataaagccatccttctttgttaatgacgttcctg
tttacatacaagattcgggtagctagggcagagatggcttcagtgggtaa
aggtgcttgctgccaatcttgacggcccgagttcaattcccacacttaca
acctcctacaagttgttctatacacactatagcttgtagccgccaccccc
aatcccattaaataaataaatgcactaaagacaaaacctcagggaattat
acaaccataagaagcatacttctcagaaccaagtcaagtcagcaagcaga
gtagccatcggcataactaaagtacgaagctgggcagagtggccacaagc
atgactgacatacggagctcagaatttacccagatcacgagtggacagga
ggagacaatgattgcaaacacgagtttgaaggcctgagttcaatccttgg
gactcagtgtcccaagggacaggaatgccatggtatgtttgagcactgtg
tttacctacccacctctcctctttgtctctcccccatatagtatatatat
atatatatatatatatatatataatttgtgtgctttacaaacaatagtag
ggctgtattctgttgctggattataaaacatggatgaatcaaaatccact
tcagaactcacagctaattagcatagacatgtcttggaagactaagatat
aagtatcctgctagtcattttttttaactgacccaggtaaggtattggga
aagggactctaagttcgaaatgcctccttaattgggtgaggcaactgtgg
catttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93131876_93132852
seq2: B6Ng01-036N16.b_47_1016 (reverse)

seq1  TCATGGAGACTTAAGAGTCAGGTGAGAAGAGAGGCCAGCCCATTGAGACA  50
      |||| ||||| ||||| ||||||| |||||| |||||||||| |||||||
seq2  TCAT-GAGAC-TAAGAATCAGGTG-GAAGAG-GGCCAGCCCA-TGAGACA  45

seq1  TGGCTGCCACCGTCACATAGCCTATGAGGGGTTTCCAAGGTCTTTGCATA  100
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  T-GCTGCCACCGTCACATAGCCTATGAGGGG-TTCCAAGGTCTTTGCATA  93

seq1  AAGA-CTGGACAGTCTATCTCTCTAGTAGTTACAACCCTTAGGAAATGAA  149
      |||| ||| |||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAGCTGAACAGTCTATCTCTCTAGTAGTTACAACCCTTAGGAAATGAG  143

seq1  GCTCT-GGGATGGTGGCCACAGCTTCCTTATATGGCTTTTCTTTCCCTGC  198
      ||||| ||||||| ||||||||| |||| |||||||||||| ||||||||
seq2  GCTCTGGGGATGGGGGCCACAGC-TCCTAATATGGCTTTTC-TTCCCTGC  191

seq1  -ATG-AGAGATGGAGAGGAAGAGGGCTCTGTCTGTAGAAAGAGTACACGA  246
       ||| |||||||||||||||||||||| |||  |||||||||||||||||
seq2  AATGAAGAGATGGAGAGGAAGAGGGCTTTGTTCGTAGAAAGAGTACACGA  241

seq1  GGGCTACACTACCAGAGTCACGAGGTCTAAAACACATCACCTACACTGAA  296
       ||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  -GGCTACACTACCAGAGTCACG-GGTCT-AAACACATCACCTACACTGAA  288

seq1  GCTCCTGTTCTGTGAAGCAGAAGAGGGAAGTCTTCATGATAAATC-AATG  345
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTCCTGTTCTGTGAAGCAGAAGAGGGAAGTCTTCATGATAAATCAAATG  338

seq1  GAGAATTTCAAAGTTATAGAGCAGATCTTTCTGGAAGGAGCCCAGCCTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCAAAGTTATAGAGCAGATCTTTCTGGAAGGAGCCCAGCCTCA  388

seq1  CTCTGTAGCTTAGCCATGGCTATATCAGATGGGAGTCCACAGAAGGTCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCTTAGCCATGGCTATATCAGATGGGAGTCCACAGAAGGTCCT  438

seq1  CTGAGCATCACACAACATGACCACTCAAAACATTTTGAGCACACCCATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCACACAACATGACCACTCAAAACATTTTGAGCACACCCATTT  488

seq1  TGCCAGGTACATTTTCAAACTGTAAATCCTCCTTCACGACAGGATCTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTACATTTTCAAACTGTAAATCCTCCTTCACGACAGGATCTATT  538

seq1  ACATGAAAAATAAAATAAAGCAATGGAAGCTGCCTCTAGCTTCCAAGACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAAATAAAATAAAGCAATGGAAGCTGCCTCTAGCTTCCAAGACA  588

seq1  TTCTAAATATCCCAGGTCTCCCTGGTACACACATACATATCAGCCGTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATCCCAGGTCTCCCTGGTACACACATACATATCAGCCGTAAG  638

seq1  CACATCTGAAACTCTGGGTCTGCAAAGCCCCTTTATCTCTGGGAAATTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGAAACTCTGGGTCTGCAAAGCCCCTTTATCTCTGGGAAATTTT  688

seq1  GCCATAGTTTTCATAACCTGGGATACTTCTTGTAAAATTTATCTTGACAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGTTTTCATAACCTGGGATACTTCTTGTAAAATTTATCTTGACAA  738

seq1  GCTAACAGATTTTCCCAGAGAGTTGCCAAGAATAATCTTAAAGAGGGGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGATTTTCCCAGAGAGTTGCCAAGAATAATCTTAAAGAGGGGGG  788

seq1  AAATAAGAAGCTTAACCCAGTTTTCTTGTGTACGTAAGGAGAGGCAGGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAGCTTAACCCAGTTTTCTTGTGTACGTAAGGAGAGGCAGGAT  838

seq1  GTACGCTATACCCTGAAGGGAAAGCCATCCAAACTTTTTTCCCCAATATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCTATACCCTGAAGGGAAAGCCATCCAAACTTTTTTCCCCAATATG  888

seq1  AGTTTAAACATGTTTAGTAGAAGGAAAATAATTTAGCTCAATTAAGCCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAACATGTTTAGTAGAAGGAAAATAATTTAGCTCAATTAAGCCTA  938

seq1  CCAGTTTACTTTGACCGACTATCATGGAATTC  977
      ||||||||||||||||||||||||||||||||
seq2  CCAGTTTACTTTGACCGACTATCATGGAATTC  970

seq1: chr16_93026908_93027814
seq2: B6Ng01-036N16.g_68_923

seq1  GAATTCCAGCCACTGCAGTAAGGCAAGAAAAATAAACAAAAAAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACTGCAGTAAGGCAAGAAAAATAAACAAAAAAGAATTCA  50

seq1  AATCGAACAGGAAGAAATAAAGCCATCCTTCTTTGTTAATGACGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAACAGGAAGAAATAAAGCCATCCTTCTTTGTTAATGACGTTCCTG  100

seq1  TTTACATACAAGATTCGGGTAGCTAGGGCAGAGATGGCTTCAGTGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATACAAGATTCGGGTAGCTAGGGCAGAGATGGCTTCAGTGGGTAA  150

seq1  AGGTGCTTGCTGCCAATCTTGACGGCCCGAGTTCAATTCCCACACTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGCTGCCAATCTTGACGGCCCGAGTTCAATTCCCACACTTACA  200

seq1  ACCTCCTACAAGTTGTTCTATACACACTATAGCTTGTAGCCGCCACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTACAAGTTGTTCTATACACACTATAGCTTGTAGCCGCCACCCCC  250

seq1  AATCCCATTAAATAAATAAATGCACTAAAGACAAAACCTCAGGGAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATTAAATAAATAAATGCACTAAAGACAAAACCTCAGGGAATTAT  300

seq1  ACAACCATAAGAAGCATACTTCTCAGAACCAAGTCAAGTCAGCAAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATAAGAAGCATACTTCTCAGAACCAAGTCAAGTCAGCAAGCAGA  350

seq1  GTAGCCATCGGCATAACTAAAGTACGAAGCTGGGCAGAGTGGCCACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATCGGCATAACTAAAGTACGAAGCTGGGCAGAGTGGCCACAAGC  400

seq1  ATGACTGACATACGGAGCTCAGAATTTACCCAGATCACGAGTGGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACATACGGAGCTCAGAATTTACCCAGATCACGAGTGGACAGGA  450

seq1  GGAGACAATGATTGCAAACACGAGTTTGAAGGCCTGAGTTCAATCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAATGATTGCAAACACGAGTTTGAAGGCCTGAGTTCAATCCTTGG  500

seq1  GACTCAGTGTCCCAAGGGACAGGAATGCCATGGTATGTTTGAGCACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGTCCCAAGGGACAGGAATGCCATGGTATGTTTGAGCACTGTG  550

seq1  TTTACCTACCCACCTCTCCTCTTTGTCTCTCCCCCAATAATAGTAATAAT  600
      ||||||||||||||||||||||||||||||||||||   ||||||   ||
seq2  TTTACCTACCCACCTCTCCTCTTTGTCTCTCCCCCA--TATAGTATATAT  598

seq1  AATAATAATAATAATAATAATAATAATAATAATAAATATATGTGTGCTTT  650
      |   |||   |||   |||   |||            || ||||||||||
seq2  ATATATATATATATATATATATATA------------ATTTGTGTGCTTT  636

seq1  TAACAAAACAATAGGTAGGGCCTGTATTCTGTATGCTGGAATTATAAAAC  700
        || |||||||| |||||| ||||||||||| |||||| ||||||||||
seq2  --AC-AAACAATA-GTAGGG-CTGTATTCTGT-TGCTGG-ATTATAAAAC  679

seq1  ATGGATGAAATCACAAAATCCAACTTCAAGAACTCAACAGCTAAATTAAG  750
      |||||||||    |||||||| ||||| ||||||| ||||||||  | ||
seq2  ATGGATGAA---TCAAAATCC-ACTTC-AGAACTC-ACAGCTAA--TTAG  721

seq1  CAATAGACATGTCCTGGAAGACTAAGTATATTAAGTATCCTGGCTAGTTC  800
      | ||||||||||| |||||||||||| ||| |||||||||| ||||| ||
seq2  C-ATAGACATGTCTTGGAAGACTAAG-ATA-TAAGTATCCT-GCTAG-TC  766

seq1  ATTTTTTTTTTACTTGACCCAAGTTAGAGTTATTTGGGAAGAGGGACTCT  850
      |  |||||||||  ||||||| || || ||   ||||||| |||||||||
seq2  A--TTTTTTTTAACTGACCCAGGTAAG-GT--ATTGGGAA-AGGGACTCT  810

seq1  AAGTTCAGAAAATGCCTTCCCTAAAATTGGGCTGTAGGCAAGACTGTAGG  900
      ||||||   ||||||||  |||  ||||||| || |||||  |||||  |
seq2  AAGTTC--GAAATGCCT--CCT-TAATTGGG-TG-AGGCA--ACTGT--G  849

seq1  GCATTTC  907
      |||||||
seq2  GCATTTC  856