BAC Information

Click to search

BAC

Clone NameB6Ng01-037M19
Chromosome16 (Build37)
Map Location 46,859,081 - 47,030,856
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M19.bB6Ng01-037M19.g
ACCDH865553DH865554
length1,027593
definitionDH865553|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M19, 5' end.DH865554|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,859,081 - 46,860,109)(47,030,264 - 47,030,856)
sequence
gaattcttgatacaatctttcccaaagaattttttctgtttttttttgtt
tgttcttatttcctgtgcactcaaatccttacttgatctaatgtttgttt
ctttcattctttcttcatttcaactctccagtgctcctcgccctccttac
ttgctatctactgcatattcagggtgatcatgacaaatgcatcagaattg
gcttaaaaataaatgttagtttaaaaagcataattagctataaatggctt
catttttcttacatctgttgtatttccttttatactgtaagctgcttaaa
tacacacattcaaacatgtgagagctttgacttctcccacccagcatcaa
caaagaagaaagtgttttatgttatagggagggatagaaagttattttag
cattgatgtgattcacagaagggaaagaaattataggattttggacttgc
tttctttcttttataaaagacaaaatcaaaactttttagaaaatgtattg
gtatcatgaaaatgagaatgaggagcataatatgctccttgcaaattaca
acacgtgttctaagagtttccaagattttgcagttatttcaaggaggaaa
taaacaaagggaaacttgttaattgaagcaggaaatagaatgatgcacat
acactcagactgcacacacatgcatacacagatgcacatacccacagaag
actgtaggaaaggaagtgtggcccaatggcaagaaatgctcttccattta
aaatggttcatttagaatgcttctctctcttttcttttgttcttttggcc
atgcaacagtcttatgatctgtttaaacagtttccctacgtatcactgga
acatactcaattactattttactactaatagtatggttaaatgaaatata
acgtttagaccagttaacagctcagctctgcaagccgggtgtctgattca
attaccagaatccagagtggaaggagaggagttgccccctgacctccact
agtgtgaagtgggcagtgggacacctg
gaattccttagttgtaagaagtaacatcttcccatttgaagcagatgatg
agatttaaagcatgtatttaaatgtatttaaataattctttcctgatgta
atacatctaagacatgtccttaattttcttttaacaattttatattaaac
tcccaagacatggctttttgtttatttagttctttgttagtcatttgttt
tgttttgttttgttttgtttgttttgttttgttttctgaaacaggatttc
actatgtattctagactggacttatacaagaagtgttccaaatgctggaa
atacagacatggaacaccacacatagtgataagtctataattgctaggga
cttgatatttaaataggttgtaaggaaaagttctgctttcattacataca
ggtatacagtgagttttccaatgatcctacaccagatactttctttccgt
ctgataccctgtcaatcttattcaatgtatggcaaagtgcttttcatttc
tacactgtcaataattctttagttgtctgaactggttttcggttttgttg
ttgttggtttggttttgtctgcttttgcttgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46859081_46860109
seq2: B6Ng01-037M19.b_47_1073

seq1  GAATTCTTGATACAATCTTTCCCAAAGAATTTTTTCTGTTTTTTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATACAATCTTTCCCAAAGAATTTTTTCTGTTTTTTTTTGTT  50

seq1  TGTTCTTATTTCCTGTGCACTCAAATCCTTACTTGATCTAATGTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTATTTCCTGTGCACTCAAATCCTTACTTGATCTAATGTTTGTTT  100

seq1  CTTTCATTCTTTCTTCATTTCAACTCTCCAGTGCTCCTCGCCCTCCTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCTTTCTTCATTTCAACTCTCCAGTGCTCCTCGCCCTCCTTAC  150

seq1  TTGCTATCTACTGCATATTCAGGGTGATCATGACAAATGCATCAGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCTACTGCATATTCAGGGTGATCATGACAAATGCATCAGAATTG  200

seq1  GCTTAAAAATAAATGTTAGTTTAAAAAGCATAATTAGCTATAAATGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAATAAATGTTAGTTTAAAAAGCATAATTAGCTATAAATGGCTT  250

seq1  CATTTTTCTTACATCTGTTGTATTTCCTTTTATACTGTAAGCTGCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTACATCTGTTGTATTTCCTTTTATACTGTAAGCTGCTTAAA  300

seq1  TACACACATTCAAACATGTGAGAGCTTTGACTTCTCCCACCCAGCATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATTCAAACATGTGAGAGCTTTGACTTCTCCCACCCAGCATCAA  350

seq1  CAAAGAAGAAAGTGTTTTATGTTATAGGGAGGGATAGAAAGTTATTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAAAGTGTTTTATGTTATAGGGAGGGATAGAAAGTTATTTTAG  400

seq1  CATTGATGTGATTCACAGAAGGGAAAGAAATTATAGGATTTTGGACTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTGATTCACAGAAGGGAAAGAAATTATAGGATTTTGGACTTGC  450

seq1  TTTCTTTCTTTTATAAAAGACAAAATCAAAACTTTTTAGAAAATGTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTATAAAAGACAAAATCAAAACTTTTTAGAAAATGTATTG  500

seq1  GTATCATGAAAATGAGAATGAGGAGCATAATATGCTCCTTGCAAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATGAAAATGAGAATGAGGAGCATAATATGCTCCTTGCAAATTACA  550

seq1  ACACGTGTTCTAAGAGTTTCCAAGATTTTGCAGTTATTTCAAGGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTTCTAAGAGTTTCCAAGATTTTGCAGTTATTTCAAGGAGGAAA  600

seq1  TAAACAAAGGGAAACTTGTTAATTGAAGCAGGAAATAGAATGATGCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGGGAAACTTGTTAATTGAAGCAGGAAATAGAATGATGCACAT  650

seq1  ACACTCAGACTGCACACACATGCATACACAGATGCACATACCCACAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGACTGCACACACATGCATACACAGATGCACATACCCACAGAAG  700

seq1  ACTGTAGGAAAGGAAGTGTGGCCCAATGGCAAGAAATGCTCTTCCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGAAAGGAAGTGTGGCCCAATGGCAAGAAATGCTCTTCCATTTA  750

seq1  AAATGGTTCATTTAGAATGCTTCTCTCTCTTTTCTTTTGTTCTTTTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTCATTTAGAATGCTTCTCTCTCTTTTCTTTTGTTCTTTTGGCC  800

seq1  ATGCAACAGTCTTATGATCTGTTTAAACAGTTTCCCTACGTATCACTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGTCTTATGATCTGTTTAAACAGTTTCCCTACGTATCACTGGA  850

seq1  ACATACTCAATTACTATTTTACTACTAATAGTATGGTTAAATGAAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCAATTACTATTTTACTACTAATAGTATGGTTAAATGAAATATA  900

seq1  ACGTTTAGACCAGTTAAACAGCTCAGCTCTGCAAGCCGGATGATCTGAAT  950
      ||||||||||||||| ||||||||||||||||||||||| || |||| ||
seq2  ACGTTTAGACCAGTT-AACAGCTCAGCTCTGCAAGCCGGGTG-TCTG-AT  947

seq1  TCAATTACCAGAATCCAGAGTGGAAGGAGAGGAGTTGCCCTCTGACCTCC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAATTACCAGAATCCAGAGTGGAAGGAGAGGAGTTGCCCCCTGACCTCC  997

seq1  ACATGTGTGATGT-GGCATGTGTACACCTG  1029
      ||  |||||| || ||||   | |||||||
seq2  ACTAGTGTGAAGTGGGCAGTGGGACACCTG  1027

seq1: chr16_47030264_47030856
seq2: B6Ng01-037M19.g_69_661 (reverse)

seq1  CACACACACACACAAGCAAAAGCAGACAAAACCAAACCAACAACAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAGCAAAAGCAGACAAAACCAAACCAACAACAACAAA  50

seq1  ACCGAAAACCAGTTCAGACAACTAAAGAATTATTGACAGTGTAGAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAAACCAGTTCAGACAACTAAAGAATTATTGACAGTGTAGAAATGA  100

seq1  AAAGCACTTTGCCATACATTGAATAAGATTGACAGGGTATCAGACGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTTGCCATACATTGAATAAGATTGACAGGGTATCAGACGGAAA  150

seq1  GAAAGTATCTGGTGTAGGATCATTGGAAAACTCACTGTATACCTGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATCTGGTGTAGGATCATTGGAAAACTCACTGTATACCTGTATGT  200

seq1  AATGAAAGCAGAACTTTTCCTTACAACCTATTTAAATATCAAGTCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCAGAACTTTTCCTTACAACCTATTTAAATATCAAGTCCCTAG  250

seq1  CAATTATAGACTTATCACTATGTGTGGTGTTCCATGTCTGTATTTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAGACTTATCACTATGTGTGGTGTTCCATGTCTGTATTTCCAGC  300

seq1  ATTTGGAACACTTCTTGTATAAGTCCAGTCTAGAATACATAGTGAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACACTTCTTGTATAAGTCCAGTCTAGAATACATAGTGAAATCC  350

seq1  TGTTTCAGAAAACAAAACAAAACAAACAAAACAAAACAAAACAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAAAACAAAACAAAACAAACAAAACAAAACAAAACAAAACAAA  400

seq1  TGACTAACAAAGAACTAAATAAACAAAAAGCCATGTCTTGGGAGTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACAAAGAACTAAATAAACAAAAAGCCATGTCTTGGGAGTTTAAT  450

seq1  ATAAAATTGTTAAAAGAAAATTAAGGACATGTCTTAGATGTATTACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGTTAAAAGAAAATTAAGGACATGTCTTAGATGTATTACATCA  500

seq1  GGAAAGAATTATTTAAATACATTTAAATACATGCTTTAAATCTCATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATTATTTAAATACATTTAAATACATGCTTTAAATCTCATCATC  550

seq1  TGCTTCAAATGGGAAGATGTTACTTCTTACAACTAAGGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAATGGGAAGATGTTACTTCTTACAACTAAGGAATTC  593