BAC Information

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BAC

Clone NameB6Ng01-037N06
Chromosome16 (Build37)
Map Location 24,444,032 - 24,571,374
singlet/doubletdoublet
Overlap geneLpp, A730098P11Rik
Upstream geneMasp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037N06.bB6Ng01-037N06.g
ACCDH865573DH865574
length1,011209
definitionDH865573|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N06, 5' end.DH865574|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,570,343 - 24,571,374)(24,444,032 - 24,444,240)
sequence
gaattccactttcatattttcattgcaaaatgaggatgataaaatgtatt
ggtttatgaatattaaatagcataccagaagtcttaataaaatctaaatt
ggtcaaaatacttttcccccaaatctacatttgccaatttttagcagcaa
ttaataaaattattgagacctcatgtgaatctcactaaattcaattcaac
aaaaatgtactgtaatgcttgacctgttggtttcagtctctattttatgc
catgactgaaagacaagggaggaaagaaaaaaggaaaagtcatctaaagt
cacaatgttggtccctaaggacttgaactcattcacatgtgacagtgagc
ttttagaagatgaggatgtatgcaataaagtaccccaaaaagcctagtcc
tggcaatgaatggcttctgtgcagcttaatgatgttggacatggaaacag
gaaaaggctcatataagagaacaagctgttaattttctaactagggaagt
gggatatggtaggaaagccctgccctaaaagctctgtcaggggttctggg
tacagctcagtacctctgggacccactctgagttcattactcctcatctt
tgtccatctgtgatgagctaacagaataactcataccatgcaagttagaa
agaatggaggtttatcttaatcaacctttgaaagtccaagaccactgtag
cagcatctgatgaaggactttaggctattccaacccatgagagatgcaga
agggcaagagaggactacagcagtgagctcttgtatgataaccacatttt
ggaatactgtcctgctccatgtaacgcattgatgatgacagagcctttat
attctaatgacttttataaggccctacttgcaaaccttgctcattgaatt
atgcttcaactcatcaactggaagccacacatttaagctctaaacctggt
gcattcttttcttcgcctgagctacattcttttgggccttctctgacact
ccagatcaatg
catagtgcagttgaggtgtacaggaaagggtgtttccctctcccccactc
tgaggacatctctgaggcactccagccctggggtgagcaagttgacctca
ctgccctgtgttgttctgagagttgtgcttgccccttttcattcagaatt
cattcttaatgttcttgggaagaattttgacctgtgtgtgtgtgtgtgtg
tgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24570343_24571374
seq2: B6Ng01-037N06.b_48_1058 (reverse)

seq1  CATTGATCCTGGAAGTGGTCAGAGAAGGCACCAAAAAGGAATGGTAGCTC  50
      ||||||| |||| ||| |||||||||||| ||||||  |||| |||||||
seq2  CATTGAT-CTGG-AGT-GTCAGAGAAGGC-CCAAAA--GAAT-GTAGCTC  43

seq1  AGTGCAGAGAAAGAAATGCAGCAAGGTGTTAGAGCTTAAATGTGTGCCTC  100
      || ||  |||||  |||||| | |||| |||||||||||||||||| || 
seq2  AG-GCGAAGAAAAGAATGCA-CCAGGT-TTAGAGCTTAAATGTGTGGCTT  90

seq1  CAGGTTGATGAGTTTGAAGCATAATTCCAATGGAGCAGGGTTGGCAGGTA  150
      |  ||||||||| ||||||||||||| |||| ||||| |||| ||| |||
seq2  CCAGTTGATGAG-TTGAAGCATAATT-CAAT-GAGCAAGGTTTGCAAGTA  137

seq1  GGGCCTTATAAAAGGTCATTAGAATATAAAGGCTCTGTCATCATCAATGC  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTATAAAA-GTCATTAGAATATAAAGGCTCTGTCATCATCAATGC  186

seq1  GGTTACCATGGGAGCAGGACAGTTATTCCAAAATGTGGTTATCATAACAA  250
       |||| ||| |||||||||||| |||||||||||||||||||||| ||||
seq2  -GTTA-CAT-GGAGCAGGACAG-TATTCCAAAATGTGGTTATCAT-ACAA  231

seq1  GAGCTCACTTGCTGTAGTCTTCTCTTGCCCTTCTGCCTTCTCTCATGGGT  300
      |||||||| |||||||||| ||||||||||||||| | ||||||||||||
seq2  GAGCTCAC-TGCTGTAGTCCTCTCTTGCCCTTCTG-CATCTCTCATGGGT  279

seq1  TGGAATAGCCTAAAGTCCTTCATCAGATGCTGCTACAGTGGTCTTGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGCCTAAAGTCCTTCATCAGATGCTGCTACAGTGGTCTTGGACT  329

seq1  TTCAAAGGTTGATTAAGATAAACCTCCATTCTTTCTAACTTGCATGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGTTGATTAAGATAAACCTCCATTCTTTCTAACTTGCATGGTAT  379

seq1  GAGTTATTCTGTTAGCTCATCACAGATGGACAAAGATGAGGAGTAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTCTGTTAGCTCATCACAGATGGACAAAGATGAGGAGTAATGAA  429

seq1  CTCAGAGTGGGTCCCAGAGGTACTGAGCTGTACCCAGAACCCCTGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGGGTCCCAGAGGTACTGAGCTGTACCCAGAACCCCTGACAGA  479

seq1  GCTTTTAGGGCAGGGCTTTCCTACCATATCCCACTTCCCTAGTTAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGGGCAGGGCTTTCCTACCATATCCCACTTCCCTAGTTAGAAAA  529

seq1  TTAACAGCTTGTTCTCTTATATGAGCCTTTTCCTGTTTCCATGTCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTTGTTCTCTTATATGAGCCTTTTCCTGTTTCCATGTCCAACA  579

seq1  TCATTAAGCTGCACAGAAGCCATTCATTGCCAGGACTAGGCTTTTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGCTGCACAGAAGCCATTCATTGCCAGGACTAGGCTTTTTGGGG  629

seq1  TACTTTATTGCATACATCCTCATCTTCTAAAAGCTCACTGTCACATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTGCATACATCCTCATCTTCTAAAAGCTCACTGTCACATGTGA  679

seq1  ATGAGTTCAAGTCCTTAGGGACCAACATTGTGACTTTAGATGACTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCAAGTCCTTAGGGACCAACATTGTGACTTTAGATGACTTTTCC  729

seq1  TTTTTTCTTTCCTCCCTTGTCTTTCAGTCATGGCATAAAATAGAGACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCCTCCCTTGTCTTTCAGTCATGGCATAAAATAGAGACTGA  779

seq1  AACCAACAGGTCAAGCATTACAGTACATTTTTGTTGAATTGAATTTAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAGGTCAAGCATTACAGTACATTTTTGTTGAATTGAATTTAGTG  829

seq1  AGATTCACATGAGGTCTCAATAATTTTATTAATTGCTGCTAAAAATTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACATGAGGTCTCAATAATTTTATTAATTGCTGCTAAAAATTGGC  879

seq1  AAATGTAGATTTGGGGGAAAAGTATTTTGACCAATTTAGATTTTATTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGATTTGGGGGAAAAGTATTTTGACCAATTTAGATTTTATTAAG  929

seq1  ACTTCTGGTATGCTATTTAATATTCATAAACCAATACATTTTATCATCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGTATGCTATTTAATATTCATAAACCAATACATTTTATCATCCT  979

seq1  CATTTTGCAATGAAAATATGAAAGTGGAATTC  1032
      ||||||||||||||||||||||||||||||||
seq2  CATTTTGCAATGAAAATATGAAAGTGGAATTC  1011

seq1: chr16_24444032_24444240
seq2: B6Ng01-037N06.g_75_283

seq1  CATAGTGCAGTTGAGGTGTACAGGAAAGGGTGTTTCCCTCTCCCCCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCAGTTGAGGTGTACAGGAAAGGGTGTTTCCCTCTCCCCCACTC  50

seq1  TGAGGACATCTCTGAGGCACTCCAGCCCTGGGGTGAGCAAGTTGACCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATCTCTGAGGCACTCCAGCCCTGGGGTGAGCAAGTTGACCTCA  100

seq1  CTGCCCTGTGTTGTTCTGAGAGTTGTGCTTGCCCCTTTTCATTCAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTTGTTCTGAGAGTTGTGCTTGCCCCTTTTCATTCAGAATT  150

seq1  CATTCTTAATGTTCTTGGGAAGAATTTTGACCTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTAATGTTCTTGGGAAGAATTTTGACCTGTGTGTGTGTGTGTGTG  200

seq1  TGTGTGTGT  209
      |||||||||
seq2  TGTGTGTGT  209