BAC Information

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BAC

Clone NameB6Ng01-038B15
Chromosome16 (Build37)
Map Location 42,912,879 - 43,033,921
singlet/doubletdoublet
Overlap geneBC002163
Upstream geneLsamp, Gap43
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038B15.bB6Ng01-038B15.g
ACCDH865772DH865773
length1,1061,120
definitionDH865772|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B15, 5' end.DH865773|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,032,796 - 43,033,921)(42,912,879 - 42,914,023)
sequence
gaattctctgtccgtacattgtcagcagcagttatctttgcctttttaat
tacagtcattttaaggtatgaaacctagcttactacagtcttgattttaa
tttgtttttaggattattattgatgtttgacattctttcatttatttctt
ggctatttctgttcgctcccaagaaaaaagtacgcagttcctgttcccat
tgttcacgtacattaagtgccttatgctcattggatattaatccttatat
aaatctactgttttaagggttgcctctattctcattgctgttactttctc
ttttagaaactaagcaggggaaaaacccaccaactactaggttttagagg
taaatactgtactctaaatcatttacttaatcagagaagtctactttcta
ctgataagttctgggttttttttttttttgtacttcagaaaaaaaataat
aaacacacatcctatgataaaatatcctcctctttgtggattatcaatca
ctcctttgctgcagtgctctcacgtgtgttggagaataactctcttattt
caaatgctctctgcgtgagaggagctctccatgtgtaaacggaaacatga
agaaaatggaaagtcacaggaaaaagaaacacggagataaaaagtgaaga
gtgaagtaaatgtaacagaaaatagaaattattaaaaggaaatgccttac
tgattgaaaaatctgggaacagtcttccaatttaagtcattattagttac
tggtagcattctatgtgtcatgcattaaattcaatatatttattaataat
atctctaatcctaactataacagagatctcgttcttcattttcctttgag
attagtgcagagaagtaagtcacttaccctggtaacaagaagcagttgaa
ccaaagctaaactcaatttaaactctaagtatatgctattccagatagga
gtacaaaatacacatactaaataaacaacgttcccacatagctgtcacag
tcactctcaatcatgtcagtctgtatggagagtcgcctgatctctagagt
cactagaagtaacatattcttggaataaatgaacatttttcttaatgtta
aaaaca
gaattcatttcatagtttgatcgttccagcaaatgtaactgacaaagatt
ataggagtgttttctattcgtatgggtatgccaacttagccattagtaaa
aataattagcaggatgcttcttcaggttatgtaactgttttggttctcat
atgcacatgtgaaaactgtatgactgtcatttaaaataaaaacaccttac
gtagacagccttttttgttgttgtctaaatagaagtcaggcaaatgctgt
tgggagggttgctttacactatttcgtggtgatttattttctttttaaaa
tactggacacattaaactcctcttaattcagtaaatacacccctgctctt
tatatatttattcattgtccctatgttcttggtcatatattcttatcact
tgggtttcaaataggattaaaaagaagtaaaatccttgtaccattttgtg
gtttcttatatcagcaatgatctttattccctcatttcattgctacaagg
aaaagaaatagatgtgcttaagaaggaaattgaaataagtaatactgaga
atgggaggagttggtgaaagaaaaatactttgtgcccaacttaggaaaaa
gctatttgacccattcctacagcttccgttttcatcctgctaaagccaat
agatctaactactctgttcatcccgattcagatgctaatggtgccacttc
tgcgaggttatagcagagtcaaagcgtctcacacgagtgggactctcagt
atcaggcctcttgctgtccttgaatccttggggtttgagctctgagcaga
tagatcttcatatttgttctgtaagaagtcttcctaacaaagcagtcacc
aaagcagcaccgtaagcggaattaacgtgggtgaactgatctaccaagtt
tgtgtgtgttttctctaaaacaagccaaataattttatataaaacagcaa
ccaaaataccctctcaactttccatcagacaaatggattcagttttgttt
taataaaagcttccgatccagtgtatagcccattcttcagtgcatctgcc
cattggtgctgctttgcagtgggtgagatcagataattttttcttagaaa
aatatactcttaattccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43032796_43033921
seq2: B6Ng01-038B15.b_43_1148 (reverse)

seq1  TGTTTCTTAACATTATAGAAATATGTTCATTTTAATTCCAAGAATATGTT  50
      ||||| ||||||||| ||||| ||||||||||  ||||||||||||||||
seq2  TGTTT-TTAACATTA-AGAAAAATGTTCATTT--ATTCCAAGAATATGTT  46

seq1  ACTGTCTTAGTTGACTCTAGAGATTCAGGCGACTTCTTCCATTAACAGAC  100
      ||| || ||| |||||||||||| ||||||||||   |||||  ||||||
seq2  ACT-TC-TAG-TGACTCTAGAGA-TCAGGCGACT--CTCCAT--ACAGAC  88

seq1  TGACATGATTTGAGAGTGACTTGTTGACAGCTATGTGGGAACGTTTGTTT  150
      |||||||| ||||||||||||   ||||||||||||||||||| ||||||
seq2  TGACATGA-TTGAGAGTGACT--GTGACAGCTATGTGGGAACG-TTGTTT  134

seq1  ATTTAGTATGTGTATTTTGTACTTCCTATCTGGAAATAGCATTATACTTA  200
      |||||||||||||||||||||| |||||||||| ||||||| ||||||||
seq2  ATTTAGTATGTGTATTTTGTAC-TCCTATCTGG-AATAGCA-TATACTTA  181

seq1  GAGTTTAAATTGAGTTTTAGCTTTGGTTCAACTGCTTCTTGTTACCAGGG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAATTGAG-TTTAGCTTTGGTTCAACTGCTTCTTGTTACCAGGG  230

seq1  TAAGTGACTTACTTCTCTGCACTAATCTCAAAGGAAAATGAAGAACGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACTTACTTCTCTGCACTAATCTCAAAGGAAAATGAAGAACGAGA  280

seq1  TCTCTGTTATAGTTAGGATTAGAGATATTATTAATAAATATATTGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTATAGTTAGGATTAGAGATATTATTAATAAATATATTGAATTT  330

seq1  AATGCATGACACATAGAATGCTACCAGTAACTAATAATGACTTAAATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGACACATAGAATGCTACCAGTAACTAATAATGACTTAAATTGG  380

seq1  AAGACTGTTCCCAGATTTTTCAATCAGTAAGGCATTTCCTTTTAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTTCCCAGATTTTTCAATCAGTAAGGCATTTCCTTTTAATAATT  430

seq1  TCTATTTTCTGTTACATTTACTTCACTCTTCACTTTTTATCTCCGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCTGTTACATTTACTTCACTCTTCACTTTTTATCTCCGTGTTT  480

seq1  CTTTTTCCTGTGACTTTCCATTTTCTTCATGTTTCCGTTTACACATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTGTGACTTTCCATTTTCTTCATGTTTCCGTTTACACATGGAG  530

seq1  AGCTCCTCTCACGCAGAGAGCATTTGAAATAAGAGAGTTATTCTCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCTCACGCAGAGAGCATTTGAAATAAGAGAGTTATTCTCCAACA  580

seq1  CACGTGAGAGCACTGCAGCAAAGGAGTGATTGATAATCCACAAAGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGAGAGCACTGCAGCAAAGGAGTGATTGATAATCCACAAAGAGGAG  630

seq1  GATATTTTATCATAGGATGTGTGTTTATTATTTTTTTTCTGAAGTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTATCATAGGATGTGTGTTTATTATTTTTTTTCTGAAGTACAAA  680

seq1  AAAAAAAAAAACCCAGAACTTATCAGTAGAAAGTAGACTTCTCTGATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCCAGAACTTATCAGTAGAAAGTAGACTTCTCTGATTAA  730

seq1  GTAAATGATTTAGAGTACAGTATTTACCTCTAAAACCTAGTAGTTGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGATTTAGAGTACAGTATTTACCTCTAAAACCTAGTAGTTGGTGG  780

seq1  GTTTTTCCCCTGCTTAGTTTCTAAAAGAGAAAGTAACAGCAATGAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCCTGCTTAGTTTCTAAAAGAGAAAGTAACAGCAATGAGAATA  830

seq1  GAGGCAACCCTTAAAACAGTAGATTTATATAAGGATTAATATCCAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACCCTTAAAACAGTAGATTTATATAAGGATTAATATCCAATGAG  880

seq1  CATAAGGCACTTAATGTACGTGAACAATGGGAACAGGAACTGCGTACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCACTTAATGTACGTGAACAATGGGAACAGGAACTGCGTACTTT  930

seq1  TTTCTTGGGAGCGAACAGAAATAGCCAAGAAATAAATGAAAGAATGTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGGAGCGAACAGAAATAGCCAAGAAATAAATGAAAGAATGTCAA  980

seq1  ACATCAATAATAATCCTAAAAACAAATTAAAATCAAGACTGTAGTAAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATAATAATCCTAAAAACAAATTAAAATCAAGACTGTAGTAAGCT  1030

seq1  AGGTTTCATACCTTAAAATGACTGTAATTAAAAAGGCAAAGATAACTGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCATACCTTAAAATGACTGTAATTAAAAAGGCAAAGATAACTGCT  1080

seq1  GCTGACAATGTACGGACAGAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  GCTGACAATGTACGGACAGAGAATTC  1106

seq1: chr16_42912879_42914023
seq2: B6Ng01-038B15.g_68_1187

seq1  GAATTCATTTCATAGTTTGATCGTTCCAGCAAATGTAACTGACAAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATAGTTTGATCGTTCCAGCAAATGTAACTGACAAAGATT  50

seq1  ATAGGAGTGTTTTCTATTCGTATGGGTATGCCAACTTAGCCATTAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTGTTTTCTATTCGTATGGGTATGCCAACTTAGCCATTAGTAAA  100

seq1  AATAATTAGCAGGATGCTTCTTCAGGTTATGTAACTGTTTTGGTTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGCAGGATGCTTCTTCAGGTTATGTAACTGTTTTGGTTCTCAT  150

seq1  ATGCACATGTGAAAACTGTATGACTGTCATTTAAAATAAAAACACCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGTGAAAACTGTATGACTGTCATTTAAAATAAAAACACCTTAC  200

seq1  GTAGACAGCCTTTTTTGTTGTTGTCTAAATAGAAGTCAGGCAAATGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGCCTTTTTTGTTGTTGTCTAAATAGAAGTCAGGCAAATGCTGT  250

seq1  TGGGAGGGTTGCTTTACACTATTTCGTGGTGATTTATTTTCTTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGTTGCTTTACACTATTTCGTGGTGATTTATTTTCTTTTTAAAA  300

seq1  TACTGGACACATTAAACTCCTCTTAATTCAGTAAATACACCCCTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGACACATTAAACTCCTCTTAATTCAGTAAATACACCCCTGCTCTT  350

seq1  TATATATTTATTCATTGTCCCTATGTTCTTGGTCATATATTCTTATCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTATTCATTGTCCCTATGTTCTTGGTCATATATTCTTATCACT  400

seq1  TGGGTTTCAAATAGGATTAAAAAGAAGTAAAATCCTTGTACCATTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCAAATAGGATTAAAAAGAAGTAAAATCCTTGTACCATTTTGTG  450

seq1  GTTTCTTATATCAGCAATGATCTTTATTCCCTCATTTCATTGCTACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATATCAGCAATGATCTTTATTCCCTCATTTCATTGCTACAAGG  500

seq1  AAAAGAAATAGATGTGCTTAAGAAGGAAATTGAAATAAGTAATACTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATAGATGTGCTTAAGAAGGAAATTGAAATAAGTAATACTGAGA  550

seq1  ATGGGAGGAGTTGGTGAAAGAAAAATACTTTGTGCCCAACTTAGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGAGTTGGTGAAAGAAAAATACTTTGTGCCCAACTTAGGAAAAA  600

seq1  GCTATTTGACCCATTCCTACAGCTTCCGTTTTCATCCTGCTAAAGCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGACCCATTCCTACAGCTTCCGTTTTCATCCTGCTAAAGCCAAT  650

seq1  AGATCTAACTACTCTGTTCATCCCGATTCAGATGCTAATGGTGCCACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACTACTCTGTTCATCCCGATTCAGATGCTAATGGTGCCACTTC  700

seq1  TGCGAGGTTATAGCAGAGTCAAAGCGTCTCACACGAGTGGGACTCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGTTATAGCAGAGTCAAAGCGTCTCACACGAGTGGGACTCTCAGT  750

seq1  ATCAGGCCTCTTGCTGTCCTTGAATCCTTGGGGTTTGAGCTCTGAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTCTTGCTGTCCTTGAATCCTTGGGGTTTGAGCTCTGAGCAGA  800

seq1  TAGATCTTCATATTTGTTCTGTAAGAAGTCTTCCTAACAAAGCAGTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTCATATTTGTTCTGTAAGAAGTCTTCCTAACAAAGCAGTCACC  850

seq1  AAAGCAGCACCGTAAGCGGAATTAACGTGGGTGAACTGATCTACCAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCACCGTAAGCGGAATTAACGTGGGTGAACTGATCTACCAAGTT  900

seq1  TGTGTGTGTTTTCTCTTAAAACAAAGCCAAATAATTTTATATAAAACAGC  950
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TGTGTGTGTTTTCTC-TAAAAC-AAGCCAAATAATTTTATATAAAACAGC  948

seq1  AACCAAAATACCCTCTCAACTTTCCATCAGACAAAATGGATTCAGGTTTT  1000
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AACCAAAATACCCTCTCAACTTTCCATCAGAC-AAATGGATTCA-GTTTT  996

seq1  GTTTTACATAAAAGCTTCCCGAATCCAGGTTGTAATAGCCCATTCTTCAG  1050
      |||||| ||||||||||||   ||||||  ||| ||||||||||||||||
seq2  GTTTTA-ATAAAAGCTTCC--GATCCAG--TGT-ATAGCCCATTCTTCAG  1040

seq1  TGCATCCTGCCCATTTGGTGCTTGCTTTGCAAATGTTGAGTAGATCCAGA  1100
      ||||| ||||||| ||||||| |||||||||   || |   |||| ||||
seq2  TGCAT-CTGCCCA-TTGGTGC-TGCTTTGCA---GTGGGTGAGAT-CAGA  1083

seq1  TAATTCTTTCCTTTTAAGAAAAAATTATACTCTTACATTCTCAGC  1145
      ||||| ||||    | |||||||  |||||||||| |||| ||||
seq2  TAATTTTTTC----TTAGAAAAA--TATACTCTTA-ATTC-CAGC  1120