BAC Information

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BAC

Clone NameB6Ng01-038E09
Chromosome16 (Build37)9 (Build37)
Map Location 96,136,327 - 96,137,42217,231,800 - 17,232,411
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj6, LOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
Downstream geneDscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4, Dscam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E09.bB6Ng01-038E09.g
ACCDH865883DH865884
length1,085741
definitionDH865883|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E09, 5' end.DH865884|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,136,327 - 96,137,422)(17,231,800 - 17,232,411)
sequence
gaattcagccaatttagcatcttatggtcagctgctatgacttgcctttt
gggcaacaagctgggccactgattgttgataattgggcttctatgtttcc
cctaagttgaccttgatgattaaggaaaaaaaaatcaaaatcccgaggag
acaggcagatctggttgctctgactagtcaggctctcttccttcagaggt
caagagcctcgttggtacaggcttggctagagagccaaccagacctctga
cccacaggattcccacggagcctgagagtaaactgctaccgtaggaaaca
taactcatgggaacgctccattgctattggggagggggtgccacagatca
tcccttgggatctccttccagatgacggtgatggtatactaaagtcctga
ggctggggaacaatatggcataaaatggcatgtcccaggcagcttacaca
caggcattcgttaacttggtcctggagagggggatgtctgagaccagggc
aggtcccctgagcccggagggggcgtctgctcaaggtccctccccttgtg
tacagatgctcttctctgtgtacgtatctcttatgacacccagtgacgtc
atcaaatacctatggcctctgtaagcactctgtcttcagacacagttacg
ggctggtgtccaggaccacatcaggattcccaaatatctatttttttttt
tctggaagggggcacagttcaacttgtcacacctaggaaggtgagtctgc
atgtcttcagagggtccagagtatgtaggcgacctatccttttttggctg
ctcttcttatggctcccatgggggtagagcttgggctaccagtatgtgag
ctgatgtgatagacagatttgacatatctgaccttcgggtttgtcttggc
ttctcatgtccccacattgtcaaaagagcatgaccaagtggctgctgaca
ggtagtcttggtctcaaaatgtgggtctataacttcagctttggggacag
gggacgaaactgtagatcctggggctcgtggccagccagcctactgaaaa
tgcaaagctccatgttcagggagcccacaccagat
gaattcaactcaggttcaaacgcatgcatgccaaatattttattaactga
accatctacttagcccttcttcaatatttttaaaaaggttggtagatgga
tggttggatggatagatggatggttggatgggttatccattctggctggt
ttgaattacaggtgatgcctgaccatgtgccttctttagaattcattatc
aactaaggttctccttctttcattatccatcgattatttctttatttgat
ttttaactatctggaaaaagttaagaaatgtcacttcaactaatatatta
tggaatgactatatttttaatgattaaaattctgcagagtcaactctaat
actagcattgcattgtcttgttagctcccatagcatctaatattgtttta
atagaacagtggggcaatttttagtggaaacaggataattaaatttacca
aaaaggattgctgtattaggatattgcctgtgaataaaatccaagatatt
tgagtatgaattctattcattttgtctccagacagaattatggttaaatt
aaaactagctgttttgtgtttggtagatttgaaagctttgttttttgttt
aaagtttaaaaaagccaaaggaataaatgaaggataaaaccctgttcatt
tgatatttatttgaaacatgttgtgcaggtcactttatttcttctgaatg
tcagtaactgacaattaattcaaaaatatggttggtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_96136327_96137422
seq2: B6Ng01-038E09.b_42_1126 (reverse)

seq1  ATCTGCGTGTGTGCTCCCTGAACCTGGAGCTTTTGCCATTTTCAGGTAGG  50
      ||||| ||||| ||||||||||| |||||||||   |||||||| |||||
seq2  ATCTG-GTGTGGGCTCCCTGAACATGGAGCTTT--GCATTTTCA-GTAGG  46

seq1  CTGGCTGGCCACTGAGCCCCCAGGATCTACATGTCTCTGTCCCCTGTCCC  100
      |||||||||||| ||| |||||||||||||| || || ||||||||||||
seq2  CTGGCTGGCCAC-GAG-CCCCAGGATCTACA-GTTTC-GTCCCCTGTCCC  92

seq1  CAAATGCTGAAGTTATAGACCCACATTTTGGGACCAAGACTACCTGTCAG  150
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAA-GCTGAAGTTATAGACCCACATTTTGAGACCAAGACTACCTGTCAG  141

seq1  CAGCCACTTGGTCATGCTCTTTTTGTCAATGTGGGGACATGAGAAGCCAA  200
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CAGCCACTTGGTCATGCTC-TTTTGACAATGTGGGGACATGAGAAGCCAA  190

seq1  GACAAAACACGAAGGTCAGATATGTCAAATCTGTCTATCACATCAGCTCA  250
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAC-AAACCCGAAGGTCAGATATGTCAAATCTGTCTATCACATCAGCTCA  239

seq1  CATACTGGTAGCCCAAGCTCTACCCCCATGGGAGCCATAAGAAGAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGTAGCCCAAGCTCTACCCCCATGGGAGCCATAAGAAGAGCAGC  289

seq1  CAAAAAAGGATAGGTCGCCTACATACTCTGGACCCTCTGAAGACATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGATAGGTCGCCTACATACTCTGGACCCTCTGAAGACATGCAG  339

seq1  ACTCACCTTCCTAGGTGTGACAAGTTGAACTGTGCCCCCTTCCAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTTCCTAGGTGTGACAAGTTGAACTGTGCCCCCTTCCAGAAAAA  389

seq1  AAAAAATAGATATTTGGGAATCCTGATGTGGTCCTGGACACCAGCCCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGATATTTGGGAATCCTGATGTGGTCCTGGACACCAGCCCGTA  439

seq1  ACTGTGTCTGAAGACAGAGTGCTTACAGAGGCCATAGGTATTTGATGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTGAAGACAGAGTGCTTACAGAGGCCATAGGTATTTGATGACG  489

seq1  TCACTGGGTGTCATAAGAGATACGTACACAGAGAAGAGCATCTGTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGTGTCATAAGAGATACGTACACAGAGAAGAGCATCTGTACACA  539

seq1  AGGGGAGGGACCTTGAGCAGACGCCCCCTCCGGGCTCAGGGGACCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGACCTTGAGCAGACGCCCCCTCCGGGCTCAGGGGACCTGCCC  589

seq1  TGGTCTCAGACATCCCCCTCTCCAGGACCAAGTTAACGAATGCCTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGACATCCCCCTCTCCAGGACCAAGTTAACGAATGCCTGTGTG  639

seq1  TAAGCTGCCTGGGACATGCCATTTTATGCCATATTGTTCCCCAGCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCCTGGGACATGCCATTTTATGCCATATTGTTCCCCAGCCTCAG  689

seq1  GACTTTAGTATACCATCACCGTCATCTGGAAGGAGATCCCAAGGGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGTATACCATCACCGTCATCTGGAAGGAGATCCCAAGGGATGAT  739

seq1  CTGTGGCACCCCCTCCCCAATAGCAATGGAGCGTTCCCATGAGTTATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCACCCCCTCCCCAATAGCAATGGAGCGTTCCCATGAGTTATGTT  789

seq1  TCCTACGGTAGCAGTTTACTCTCAGGCTCCGTGGGAATCCTGTGGGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACGGTAGCAGTTTACTCTCAGGCTCCGTGGGAATCCTGTGGGTCAG  839

seq1  AGGTCTGGTTGGCTCTCTAGCCAAGCCTGTACCAACGAGGCTCTTGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGTTGGCTCTCTAGCCAAGCCTGTACCAACGAGGCTCTTGACCT  889

seq1  CTGAAGGAAGAGAGCCTGACTAGTCAGAGCAACCAGATCTGCCTGTCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAGAGAGCCTGACTAGTCAGAGCAACCAGATCTGCCTGTCTCC  939

seq1  TCGGGATTTTGATTTTTTTTTCCTTAATCATCAAGGTCAACTTAGGGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATTTTGATTTTTTTTTCCTTAATCATCAAGGTCAACTTAGGGGAA  989

seq1  ACATAGAAGCCCAATTATCAACAATCAGTGGCCCAGCTTGTTGCCCAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAGCCCAATTATCAACAATCAGTGGCCCAGCTTGTTGCCCAAAA  1039

seq1  GGCAAGTCATAGCAGCTGACCATAAGATGCTAAATTGGCTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCATAGCAGCTGACCATAAGATGCTAAATTGGCTGAATTC  1085

seq1: chr9_17231800_17232411
seq2: B6Ng01-038E09.g_195_806

seq1  GGGTTATCCATTCTGGCTGGTTTGAATTACAGGTGATGCCTGACCATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCCATTCTGGCTGGTTTGAATTACAGGTGATGCCTGACCATGTG  50

seq1  CCTTCTTTAGAATTCATTATCAACTAAGGTTCTCCTTCTTTCATTATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAGAATTCATTATCAACTAAGGTTCTCCTTCTTTCATTATCCA  100

seq1  TCGATTATTTCTTTATTTGATTTTTAACTATCTGGAAAAAGTTAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTATTTCTTTATTTGATTTTTAACTATCTGGAAAAAGTTAAGAAAT  150

seq1  GTCACTTCAACTAATATATTATGGAATGACTATATTTTTAATGATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCAACTAATATATTATGGAATGACTATATTTTTAATGATTAAAA  200

seq1  TTCTGCAGAGTCAACTCTAATACTAGCATTGCATTGTCTTGTTAGCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGAGTCAACTCTAATACTAGCATTGCATTGTCTTGTTAGCTCCC  250

seq1  ATAGCATCTAATATTGTTTTAATAGAACAGTGGGGCAATTTTTAGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCTAATATTGTTTTAATAGAACAGTGGGGCAATTTTTAGTGGAA  300

seq1  ACAGGATAATTAAATTTACCAAAAAGGATTGCTGTATTAGGATATTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAATTAAATTTACCAAAAAGGATTGCTGTATTAGGATATTGCCT  350

seq1  GTGAATAAAATCCAAGATATTTGAGTATGAATTCTATTCATTTTGTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAATCCAAGATATTTGAGTATGAATTCTATTCATTTTGTCTCC  400

seq1  AGACAGAATTATGGTTAAATTAAAACTAGCTGTTTTGTGTTTGGTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATTATGGTTAAATTAAAACTAGCTGTTTTGTGTTTGGTAGATT  450

seq1  TGAAAGCTTTG-TTTTTGTTTAAAGTTTAAAAAAGCCAAAGGAATAAATG  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTTGTTTTTTGTTTAAAGTTTAAAAAAGCCAAAGGAATAAATG  500

seq1  AAGGATAAAACCCTGTTCATTTGATATTTA-TTGAAACATGTTTGTGCAG  548
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AAGGATAAAACCCTGTTCATTTGATATTTATTTGAAACATG-TTGTGCAG  549

seq1  GTCACTTTTATTTCTTCTGAATGTCAGTAAACTGACAATTAATTC-AAAA  597
      ||||| |||||||||||||||||||||| |||||||||||||||| ||||
seq2  GTCAC-TTTATTTCTTCTGAATGTCAGT-AACTGACAATTAATTCAAAAA  597

seq1  TATGGTTGGTATGTG  612
      |||||||||||||||
seq2  TATGGTTGGTATGTG  612