BAC Information

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BAC

Clone NameB6Ng01-038N01
Chromosome16 (Build37)
Map Location 14,830,588 - 14,957,932
singlet/doubletdoublet
Overlap geneEfcab1, LOC100042737
Upstream geneNtan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N01.bB6Ng01-038N01.g
ACCDH866265DH866266
length3061,014
definitionDH866265|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N01, 5' end.DH866266|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,830,588 - 14,830,893)(14,956,908 - 14,957,932)
sequence
tctgagccacctacatatattatggtagaattccataaaccatctccata
tttatgtcctcaacatggtaactttcattgtagtagttcttgaaatgttc
tttttaaacatttacttattttaataaatttgttattaattaaaatattc
ttttaattaatcatatgtatgaatgtatgtatgtgtgcaaatatgtgtgt
gtgtgtgattatattaggggagttatacattcatcatgtctgtatgttgg
gaaggtattcattgtgtgtacacttatggtgtttatgtgtgtgtgtgtgt
gtgtgt
gaattccagggtaaatggactccaccagctcctgagttcactgctgctca
gcctgaggtggccgactggtctgaggctgtgcaggtaccctctgtgccca
tccagcagttccccacagaagagaggagtgcacaggcagccactgagaat
tggtcagcagttcccacagctggagccaccactgagtggtcctgagctga
gctgctgtgtagacacacctgagcaaaaggggaaaaggtggaagtttaaa
gttaaagttcctgaaagcttaaaaaaaaaagtccagaatcctctgttttt
aagagacatacttttggttatgttagtatgtgtagtggtaaattagttaa
gctgttctatgctcccagttggttgcgcttccagccacctgccagaaccc
tctagatttgtgaatgaaacacacacacacacacacacacacacacacac
acacacacacacacactagttgattttgatatgtcttggctaactcaatg
gctggacacttctaatcctccctgaggctagcacgtttaatctttgttgc
ccttctgggcagcttccccccccaccaacccccccgagctactttcccct
tctacctacattttgctaggtcttcttctgtagctcctaaatgggatccc
tccgcctccgagtcatggcaaatctgcctcctttctctctccactatctt
tcccaagccctgggaatcctaaaagtcctgcctctgtctgccccgcccag
ccattagctgctggcatctttatttaccaattgggatcaactgagggcag
ggtctctccagtgtattatgtgcaaacactagtgtaagcagtttggagtt
caaaataacattaaaacacagcagcattagggcaactcactttcagtatt
tgttgtcaagcttggggcatctgggaaataaatttctaattttgaactga
caaagagaatgaatattatcccaatgtgcagttctaggcttaatttatgt
ggccctatggtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_14830588_14830893
seq2: B6Ng01-038N01.b_53_358

seq1  TCTGAGCCACCTACATATATTATGGTAGAATTCCATAAACCATCTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCACCTACATATATTATGGTAGAATTCCATAAACCATCTCCATA  50

seq1  TTTATGTCCTCAACATGGTAACTTTCATTGTAGTAGTTCTTGAAATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCCTCAACATGGTAACTTTCATTGTAGTAGTTCTTGAAATGTTC  100

seq1  TTTTTAAACATTTACTTATTTTAATAAATTTGTTATTAATTAAAATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACATTTACTTATTTTAATAAATTTGTTATTAATTAAAATATTC  150

seq1  TTTTAATTAATCATATGTATGAATGTATGTATGTGTGCAAATATGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAATCATATGTATGAATGTATGTATGTGTGCAAATATGTGTGT  200

seq1  GTGTGTGATTATATTAGGGGAGTTATACATTCATCATGTCTGTATGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGATTATATTAGGGGAGTTATACATTCATCATGTCTGTATGTTGG  250

seq1  GAAGGTATTCATTGTGTGTACACTTATGGTGTTTATGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATTCATTGTGTGTACACTTATGGTGTTTATGTGTGTGTGTGTGT  300

seq1  GTGTGT  306
      ||||||
seq2  GTGTGT  306

seq1: chr16_14956908_14957932
seq2: B6Ng01-038N01.g_69_1082 (reverse)

seq1  CTGACCATAGGGCCACATAAATTAAGCCTTAGACCTGCACATTGGGATAA  50
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CTGACCATAGGGCCACATAAATTAAGCC-TAGAACTGCACATTGGGATAA  49

seq1  TATTTCATTCTCTTTGTCAGTTTCAAAAATTTAAGAAATTTA-TTCCCAG  99
      || ||||||||||||||||| |||||||   | ||||||||| |||||||
seq2  TA-TTCATTCTCTTTGTCAG-TTCAAAA---TTAGAAATTTATTTCCCAG  94

seq1  ATGCCCCAAAGCATAGACAAACATATACTTGAAGTGAGTTTGGCCTAATG  149
      ||||||| |||| | ||| |||| |||||  ||||||| ||| |||||||
seq2  ATGCCCC-AAGC-TTGAC-AACAAATACTGAAAGTGAG-TTGCCCTAATG  140

seq1  CTGCTTGTGTTTTAATGTTAATTTTGGAACTCCAAACTGCTTACACTAGT  199
      |||| |||||||||||||||  ||| ||||||||||||||||||||||||
seq2  CTGC-TGTGTTTTAATGTTA--TTTTGAACTCCAAACTGCTTACACTAGT  187

seq1  GTCTGCACATAATACACTGGAGAGACCCTGCCCTCAGTTGATTCCAATTG  249
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTTGCACATAATACACTGGAGAGACCCTGCCCTCAGTTGATCCCAATTG  237

seq1  GTAAATAAAGATGCCAGCAGCTAATGGCTGGGCGGGGCAGACAGAGGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAGATGCCAGCAGCTAATGGCTGGGCGGGGCAGACAGAGGCAG  287

seq1  GACTTTTAGGATTCCCAGGGCTTGGGAAAGATAGTGGAGAGAG-AAGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACTTTTAGGATTCCCAGGGCTTGGGAAAGATAGTGGAGAGAGAAAGGAG  337

seq1  GCAGATTTGCCATGACTCGGAGGCGGAGGGATCCCATTTAGGAGCTACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTGCCATGACTCGGAGGCGGAGGGATCCCATTTAGGAGCTACAG  387

seq1  AAGAAGACCTAGCAAAATGTAGGTAGAAGGGGAAAGTAGCTCGGGGGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAAGACCTAGCAAAATGTAGGTAGAAGGGGAAAGTAGCTCGGGGGGGT  437

seq1  GGGTGGGGGGGGAAGCTGCCCAGAAGGGCAACAAAGATTAAACGTGCTAG  498
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGGGGAAGCTGCCCAGAAGGGCAACAAAGATTAAACGTGCTAG  487

seq1  CCTCAGGGAGGATTAGAAGTGTCCAGCCATTGAGTTAGCCAAGACATATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGAGGATTAGAAGTGTCCAGCCATTGAGTTAGCCAAGACATATC  537

seq1  AAAATCAACTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  587

seq1  TGTGTGTGTTTCATTCACAAATCTAGAGGGTTCTGGCAGGTGGCTGGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTTCATTCACAAATCTAGAGGGTTCTGGCAGGTGGCTGGAAG  637

seq1  CGCAACCAACTGGGAGCATAGAACAGCTTAACTAATTTACCACTACACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACCAACTGGGAGCATAGAACAGCTTAACTAATTTACCACTACACAT  687

seq1  ACTAACATAACCAAAAGTATGTCTCTTAAAAACAGAGGATTCTGGACTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATAACCAAAAGTATGTCTCTTAAAAACAGAGGATTCTGGACTTT  737

seq1  TTTTTTTAAGCTTTCAGGAACTTTAACTTTAAACTTCCACCTTTTCCCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAGCTTTCAGGAACTTTAACTTTAAACTTCCACCTTTTCCCCT  787

seq1  TTTGCTCAGGTGTGTCTACACAGCAGCTCAGCTCAGGACCACTCAGTGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGGTGTGTCTACACAGCAGCTCAGCTCAGGACCACTCAGTGGT  837

seq1  GGCTCCAGCTGTGGGAACTGCTGACCAATTCTCAGTGGCTGCCTGTGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGCTGTGGGAACTGCTGACCAATTCTCAGTGGCTGCCTGTGCAC  887

seq1  TCCTCTCTTCTGTGGGGAACTGCTGGATGGGCACAGAGGGTACCTGCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTCTGTGGGGAACTGCTGGATGGGCACAGAGGGTACCTGCACA  937

seq1  GCCTCAGACCAGTCGGCCACCTCAGGCTGAGCAGCAGTGAACTCAGGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGACCAGTCGGCCACCTCAGGCTGAGCAGCAGTGAACTCAGGAGC  987

seq1  TGGTGGAGTCCATTTACCCTGGAATTC  1025
      |||||||||||||||||||||||||||
seq2  TGGTGGAGTCCATTTACCCTGGAATTC  1014