BAC Information

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BAC

Clone NameB6Ng01-038O14
Chromosome16 (Build37)
Map Location 46,312,026 - 46,458,550
singlet/doubletdoublet
Overlap genePvrl3
Upstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
Downstream geneLOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O14.bB6Ng01-038O14.g
ACCDH866332DH866333
length937947
definitionDH866332|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O14, 5' end.DH866333|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,312,026 - 46,312,921)(46,457,600 - 46,458,550)
sequence
gaattcatatagcatcagtcctgattctgatggcttatctcttctctcag
tgtaaaacaatgccaatcaacatcattttagggacatcattttaagaaga
gctaaggtagaaaagtgggaatacgtggttttatgttaaggctgtgcaaa
ggtttagtgtgcaccatcttagatgcctaagttataatgagacactaatg
cttttataattaaactaaacaattttatgaggtagaaacaaaatcactgc
ccaggtttatgtaactttcccttaagtgatatagagagccaattcaacag
tccaagtggaaggctgaatgggcgctaaacaaagacacaggatgataaag
ataattccttgctagctttccaaattgctaacaataagaaaatcagttga
atccaatcgcgcggaacctgagactgcggtatatagggaaacagactacc
cgggcatgacctggggcacaagccccttccgctccactcaagccccgggc
taccttgccagcggagtcgcctgacacccgccaagggcccacacaggatt
ccacaagggatcctaagacctctagtgagtggaacacaacttctgccagg
agtccagttcgaacaccagatatctgggtaccttccctgcaagaagagag
ctttcctgcagagaatactctacccactgaaactaaggagagcgctaccc
tcccaggtctgcttatagaggctaacagagtcacctgaagaacaagctct
taacagagacaactataatagctagattcagagattaccagatggcgaaa
ggcgaatgtaagaatcctactacagaaatcaagaccactcacatcatcag
aacgcagcactcccaccccacctagtcctggacaccccaacacaaccgaa
aatctagaccagatttaaaacatttctcatgatgatg
gaattccatttatgtgttcatcggtgtattcattgtcttagtcaagtact
gttgactgaatattgccttcccgagtgattatgctgaaagtaaagaaaat
aattaccattcttctaaagcttatctattgagttaatgttttctcatcgt
atagtgtatttattccaaaggaggataattgtatcttgcatgcattgatt
ttatagatgctcctgaagtttcagtaacaggatatgatggaaattggttc
gggggaagaaaaggtgttaacctcaagtgtaatgctgatgcaaaccctcc
ccccttcgagtccgtgtggagcaggtaatacagagttaaacccagagcac
ccgactgtttaaaagaaaaatggattcttaaaagcagtaaggctgatttt
actcagtgcataattagattcatggctaaagaaattaaacaaatgagaag
tttctcaatatttttctatcttattgtctcttaccatcctgtcctggtat
ttctgtcccaggatactggcgacagtgttagagattttagcttttttttt
tacttttccctataattactgtcgtggatctgatgattactagcttgtgg
tgaggaagcttccacttcagtttcatcttggtttctttctctgtatcctc
tatttagggtgtgtgatatcttcagcaatagagtcgtatctaattctgtt
ggtcattcttttttgttttgttttgtttttttcgagacagagtttctctg
tgtagccctagctgtcctggaactcactctgtagaccaagcttgccttga
actaaaaatccgcctgcctctgccacccgagtactgagataaaggagtga
gccaccactgcctgtctctgatgggcatacttgagaaatggcaagacgat
ttatcgttatggtctctaggcttagctataaagaggcatctatatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46312026_46312921
seq2: B6Ng01-038O14.b_45_938

seq1  GAATTCATATAGCAGCAGTCCTGATTCTGATGGCTTATCTCTTCTCTCAG  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAGCATCAGTCCTGATTCTGATGGCTTATCTCTTCTCTCAG  50

seq1  TGTAAAACAATGCCAATCAACATCATTTTAGGGACATCATTTTAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAATGCCAATCAACATCATTTTAGGGACATCATTTTAAGAAGA  100

seq1  GCTAAGGTAGAAAAGTGGGAATACGTGGTTTTATGTTAAGGCTGTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTAGAAAAGTGGGAATACGTGGTTTTATGTTAAGGCTGTGCAAA  150

seq1  GGTTTAGTGTGCACCATCTTAGATGCCTAAGTTATAATGAGACACTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTGTGCACCATCTTAGATGCCTAAGTTATAATGAGACACTAATG  200

seq1  CTTTTATAATTAAACTAAACAATTTTATGAGGTAGAAACAAAATCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATTAAACTAAACAATTTTATGAGGTAGAAACAAAATCACTGC  250

seq1  CCAGGTTTATGTAACTTTCCCTTAAGTGATATAGAGAGCCAATTCAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTATGTAACTTTCCCTTAAGTGATATAGAGAGCCAATTCAACAG  300

seq1  TCCAAGTGGAAGGCTGAATGGGCGCTAAACAGAGACACAGGATGATAAAG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCAAGTGGAAGGCTGAATGGGCGCTAAACAAAGACACAGGATGATAAAG  350

seq1  ATAATTCCTTGCTAGCTTTCCAAATTGCTAACAATAAGAAAATCAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCTTGCTAGCTTTCCAAATTGCTAACAATAAGAAAATCAGTTGA  400

seq1  ATCCAATCGCGCGGAACCTGAGACTGCGGTATATAGGGAAACAGACTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCGCGCGGAACCTGAGACTGCGGTATATAGGGAAACAGACTACC  450

seq1  CGGGCATGACCTGGGGCACAAGCCCCTTCCGCTCCACTCGAGCCCCGGGC  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGGGCATGACCTGGGGCACAAGCCCCTTCCGCTCCACTCAAGCCCCGGGC  500

seq1  TACCTTGCCAGCGGAGTCGCCTGACACCCGCCAAGGGCCCACACAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCAGCGGAGTCGCCTGACACCCGCCAAGGGCCCACACAGGATT  550

seq1  CCACAAGGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  600

seq1  AGTCCAGTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAG  650

seq1  CTTTCCTGCAGAGAATACTCTACCCACTGAAACTAAGGAGAGCGCTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCAGAGAATACTCTACCCACTGAAACTAAGGAGAGCGCTACCC  700

seq1  TCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCT  750

seq1  TAACAGAGACAACTATAATAGCTAGATTCAGAGATTACCAGATGGCGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGACAACTATAATAGCTAGATTCAGAGATTACCAGATGGCGAAA  800

seq1  GGCAAATGTAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCATC  850
      ||| ||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GGCGAATGTAAGAATCCTACT-ACAGAAATCAAGACCACTCA-CATCATC  848

seq1  AGAACGCAGCACTCCCACCCCACCTAGTCCTGGACACCCCAACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCAGCACTCCCACCCCACCTAGTCCTGGACACCCCAACACA  894

seq1: chr16_46457600_46458550
seq2: B6Ng01-038O14.g_66_1012 (reverse)

seq1  AGATATGAGATGCCTCTTTATTAGCTAAGCCTAGAGACCCTAACGATAAA  50
      |||||| ||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGATAT-AGATGCCTCTTTA-TAGCTAAGCCTAGAGACCATAACGATAAA  48

seq1  GCCTCTTGCCATTTCTCAAGAATGCCCAACAGAGCCAGGCAGTGGTGGCC  100
       | ||||||||||||||||| ||||||| ||||| |||||||||||||| 
seq2  TCGTCTTGCCATTTCTCAAGTATGCCCATCAGAGACAGGCAGTGGTGGCT  98

seq1  CACGCCTTTAATCCCAGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  150
      ||| ||||| ||| ||||||||||| ||||||||||||||||||| | ||
seq2  CACTCCTTT-ATCTCAGTACTCGGGTGGCAGAGGCAGGCGGATTT-TTAG  146

seq1  TTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTAC  200
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCAAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTAC  196

seq1  ACAGAGAAACTTTGTCTCGAAAAAAACAAAACAAAACAAAAAAGAATGAC  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACTCTGTCTCGAAAAAAACAAAACAAAACAAAAAAGAATGAC  246

seq1  CAACAGAATTAGATACGACTCTATTGCTGAAGATATCACACACCCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAATTAGATACGACTCTATTGCTGAAGATATCACACACCCTAAAT  296

seq1  AGAGGATACAGAGAAAGAAACCAAGCTGAAACTGAAGTGGAAGCTTCCTC  350
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGGATACAGAGAAAGAAACCAAGATGAAACTGAAGTGGAAGCTTCCTC  346

seq1  ACCACAAGCTAGTAATCATCAGATCCACGACAGTAATTATAGGGAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCACAAGCTAGTAATCATCAGATCCACGACAGTAATTATAGGGAAAAGT  396

seq1  AAAAAAAAAAGCTAAAATCTCTAACACTGCTGCCAGTATCCTGGGACAGA  450
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  AAAAAAAAAAGCTAAAATCTCTAACACTGTCGCCAGTATCCTGGGACAGA  446

seq1  AATACCAGGACAGGATGGTAAGAGACAATAAGATAGAAAAATATTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGGACAGGATGGTAAGAGACAATAAGATAGAAAAATATTGAGAA  496

seq1  ACTTCTCATTTGTTTAATTTCTTTAGCCATGAATCTAATTATGCACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATTTGTTTAATTTCTTTAGCCATGAATCTAATTATGCACTGAG  546

seq1  TAAAATCAGCCTTACTGCTTTTAAGAATCCATTTCTCTTTTAAACAGTTG  600
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TAAAATCAGCCTTACTGCTTTTAAGAATCCATTTTTCTTTTAAACAGTCG  596

seq1  GGTGCTCTGGGTTTAACTCTGTATTACCTGCTCCACACGGACTTGAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGCTCTGGGTTTAACTCTGTATTACCTGCTCCACACGGACTCGAAGGG  646

seq1  TGGAGGGTTTGCATCAGCATTACACTTGAGGTTAACACCTTTTCTTCCCA  700
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGAGGGTTTGCATCAGCATTACACTTGAGGTTAACACCTTTTCTTCCCC  696

seq1  CGAACCAATTTCCATCATATCCTGTTACTGAAACTTCAGGAGCATCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCAATTTCCATCATATCCTGTTACTGAAACTTCAGGAGCATCTATA  746

seq1  AAATCAATGCATGCAAGATACAATTATCCTCCTTTGGAATAAATACACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGCATGCAAGATACAATTATCCTCCTTTGGAATAAATACACTA  796

seq1  TACGATGAGAAAACATTAACTCAATAGATAAGCTTTAGAAGAATGGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATGAGAAAACATTAACTCAATAGATAAGCTTTAGAAGAATGGTAAT  846

seq1  TATTTTCTTTACTTTCAGCATAATCACTCGGGAAGGCAATATTCAGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTACTTTCAGCATAATCACTCGGGAAGGCAATATTCAGTCAA  896

seq1  CAGTACTTGACTAAGACAATGAATACATTGATGAACACATGAATGGAATT  950
      |||||||||||||||||||||||||||  ||||||||||| |||||||||
seq2  CAGTACTTGACTAAGACAATGAATACACCGATGAACACATAAATGGAATT  946

seq1  C  951
      |
seq2  C  947