BAC Information

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BAC

Clone NameB6Ng01-039C13
Chromosome16 (Build37)10 (Build37)
Map Location 36,872,950 - 36,874,02696,050,348 - 96,050,659
singlet/doubletsingletsinglet
Overlap geneEaf2
Upstream geneLOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Iqcb1
Downstream geneLOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039C13.bB6Ng01-039C13.g
ACCDH866507DH866508
length1,065832
definitionDH866507|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C13, 5' end.DH866508|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,872,950 - 36,874,026)(96,050,348 - 96,050,659)
sequence
gaattcctggagatccgcctgcctctgcctcccaggtgctgggattgaaa
gcatgtgccaccactgcctttatggttttgaccttgacaaagtttagaaa
aataattgatcaattaaatagcattacattaagaaagacgggagaagaga
aagaaacagtagtttatatttcatatataatagtaaaaataatgcttttg
tttttttaaaaaaaagtctcactatatagctctggctggcctggaattaa
ctagacctcacagttctacctgctgcttcctcttagtgctgtgattacag
gcatgtaccaccatacctgaccactgctttgcttatttcctttttaaaat
ggtgaaatggaaagtatgttcaattactgcttgtttgtgagcgtgtgtgt
gtgtgtctatgtgggggtatttactcaaaatataaggggttgtttgagct
tgagttactggtagctatgaggcaccagatattgggactgggaacccagt
gagtcctctgtaagagcaagtgctcttaactactgagccatctttctagc
cctcatacactgcttttcaataaaaaaaaaaaaagcctttaattggccat
ttctttttctaacttgtgatttattggtgtatattatacttgtggtatat
atgatatactttttcatatatatacaaatatatatgtgatagttacatgc
aatttacatttgacaaatatttgaataaatgttaagttgaaaataaaata
tgttatctggaagacaaattagtgagaggccaaacatcttggaacctgcc
tccatcttaaaaggaaaacttggcccccacccgaacacaagttgcaccta
agtaccaggaaggaccgaatggcttgtccttagccagttaccccctagct
acttcctagcaacagatatcaaaggttagtctgattgtttcagatatact
ttcagacctttagtggttgtatacgtcttgcttcagaagcactactgtcg
gcttacaatagaacatgcatgcttgcaaggctggacctccctcctacttc
atttctataacctgt
gaattcctggcttcgataacatgttttaattgccttttcatgtactgctt
gactatgaggaaaggcagaagatgattcttaagggattgtgtttaggagc
tacagagggaaaattatctgaaatgtaggtggaaggggaaagaagtttat
tcttaagtaggtatatatcaagagagaggctagaccaaccccatcaaggc
ttagagaacatccagaaatgagtgcaaactgacttctaattttaaaagtt
tactcccagactcttgtccaactccctttcctgtagagcattaaattagt
taaactgctctattctggctgctggattcttgaatgaaacacacacacac
accagttaatttttatatgccttagctagctcaatggctgggcacttcta
atcctccctgtggctagcatatatttctttctgaccttctgatactccta
gcttaacacctttttctttttaaatttatttattatatgtaagtacactg
tagctgtcttcagacactccagaagagggcatcagatctcattactggtg
gttgtgatccaccatgtgcttgctgggatttgaacttaggaccttcggaa
gagcagtcagtgctgttaaccactgagccatctctccagcccagcttaac
accttctaattctatgttttatctttgctgtgcccttaccttctgggcag
ttcacccaataggcccactttccccttccacctacattttggatgatttt
tcttctgaagctcataaacccaccctctgcctctgagtcatagcaaatct
ctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36872950_36874026
seq2: B6Ng01-039C13.b_49_1113

seq1  GAATTCCTGGAGATCCGCCTGCCTCTGCCTCCCAGGTGCTGGGATTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGATCCGCCTGCCTCTGCCTCCCAGGTGCTGGGATTGAAA  50

seq1  GCATGTGCCACCACTGCCTTTATGGTTTTGACCTTGACAAAGTTTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCACCACTGCCTTTATGGTTTTGACCTTGACAAAGTTTAGAAA  100

seq1  AATAATTGATCAATTAAATAGCATTACATTAAGAAAGACGGGAGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGATCAATTAAATAGCATTACATTAAGAAAGACGGGAGAAGAGA  150

seq1  AAGAAACAGTAGTTTATATTTCATATATAATAGTAAAAATAATGCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGTAGTTTATATTTCATATATAATAGTAAAAATAATGCTTTTG  200

seq1  TTTTTTTAAAAAAAAGTCTCACTATATAGCTCTGGCTGGCCTGGAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAAAAGTCTCACTATATAGCTCTGGCTGGCCTGGAATTAA  250

seq1  CTAGACCTCACAGTTCTACCTGCTGCTTCCTCTTAGTGCTGTGATTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTCACAGTTCTACCTGCTGCTTCCTCTTAGTGCTGTGATTACAG  300

seq1  GCATGTACCACCATACCTGACCACTGCTTTGCTTATTTCCTTTTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACCACCATACCTGACCACTGCTTTGCTTATTTCCTTTTTAAAAT  350

seq1  GGTGAAATGGAAAGTATGTTCAATTACTGCTTGTTTGTGAGCGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATGGAAAGTATGTTCAATTACTGCTTGTTTGTGAGCGTGTGTGT  400

seq1  GTGTGTCTATGTGGGGGTATTTACTCAAAATATAAGGGGTTGTTTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTATGTGGGGGTATTTACTCAAAATATAAGGGGTTGTTTGAGCT  450

seq1  TGAGTTACTGGTAGCTATGAGGCACCAGATATTGGGACTGGGAACCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACTGGTAGCTATGAGGCACCAGATATTGGGACTGGGAACCCAGT  500

seq1  GAGTCCTCTGTAAGAGCAAGTGCTCTTAACTACTGAGCCATCTTTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCTGTAAGAGCAAGTGCTCTTAACTACTGAGCCATCTTTCTAGC  550

seq1  CCTCATACACTGCTTTTCAATAAAAAAAAAAAAAGCCTTTAATTGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACACTGCTTTTCAATAAAAAAAAAAAAAGCCTTTAATTGGCCAT  600

seq1  TTCTTTTTCTAACTTGTGATTTATTGGTGTATATTATACTTGTGGTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTAACTTGTGATTTATTGGTGTATATTATACTTGTGGTATAT  650

seq1  ATGATATACTTTTTCATATATATACAAATATATATGTGATAGTTACATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATACTTTTTCATATATATACAAATATATATGTGATAGTTACATGC  700

seq1  AATTTACATTTGACAAATATTTGAATAAATGTTAAGTTGAAAATAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATTTGACAAATATTTGAATAAATGTTAAGTTGAAAATAAAATA  750

seq1  TGTTATCTGGAAGACAAATTAGTGAGAGGCCAAACATCTTGGAACCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGGAAGACAAATTAGTGAGAGGCCAAACATCTTGGAACCTGCC  800

seq1  TCCATCTTAAAAGGAAAAACTTGGCCCCCACCCGAACACAAGTTGCACCT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCATCTTAAAAGG-AAAACTTGGCCCCCACCCGAACACAAGTTGCACCT  849

seq1  AAGTACCAGGAAGGACCGAATGGCTTGTCCTTAGCCAGTTACCCCCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCAGGAAGGACCGAATGGCTTGTCCTTAGCCAGTTACCCCCTAGC  899

seq1  TACTTCCTAGCAACAGATAATCAAAGGTTAGTCTGATTGTTTCAGATATA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACTTCCTAGCAACAGAT-ATCAAAGGTTAGTCTGATTGTTTCAGATATA  948

seq1  CTTTCAGACCTTTAGTGGTTGTATACGGTCTTGCTTCAG-AGCACCTACC  999
      |||||||||||||||||||||||||| |||||||||||| |||| ||| |
seq2  CTTTCAGACCTTTAGTGGTTGTATAC-GTCTTGCTTCAGAAGCA-CTA-C  995

seq1  TGTCGGCTTACAATAGACAATTGCATGCTTGCAAGGCTGGACCCTCCCTC  1049
      ||||||||||||||||| |  |||||||||||||||||||| ||||||| 
seq2  TGTCGGCTTACAATAGA-ACATGCATGCTTGCAAGGCTGGA-CCTCCCT-  1042

seq1  ACTTACTTCCATTTCCTATAAACCCTGT  1077
       | ||||| ||||| ||||||  |||||
seq2  -CCTACTT-CATTT-CTATAA--CCTGT  1065

seq1: chr10_96050348_96050659
seq2: B6Ng01-039C13.g_534_899 (reverse)

seq1  AGAGAGAGAGAGAGAGAGCGCACACACAGAGAGAGAGAGA--------GA  42
      ||||||||||||||||||     | | |||||||||||||        ||
seq2  AGAGAGAGAGAGAGAGAG-----AGAGAGAGAGAGAGAGATTTGCTATGA  45

seq1  GAGAGAGAGAGAGAGAGCG-----------CACACACACACACACACAGA  81
         ||||  |||| | | |           || |   | |  ||  || |
seq2  CTCAGAGGCAGAGGGTGGGTTTATGAGCTTCAGAAGAAAAATCATCCAAA  95

seq1  ---------GAGAGAGAGAGAGAG----------------------ATGC  100
               ||  | || || | |                      | | 
seq2  ATGTAGGTGGAAGGGGAAAGTGGGCCTATTGGGTGAACTGCCCAGAAGGT  145

seq1  ATGCACACA-CTCATGTAAAA-AT-GAAT-------------CTTGGGCT  134
      | |  |||| |  |  ||||| || ||||               ||||||
seq2  AAGGGCACAGCAAAGATAAAACATAGAATTAGAAGGTGTTAAGCTGGGCT  195

seq1  GGAGAGATGGCTCAGTGGTTAAGAGAACCGACTGCTCTTCCGAAGGTCCT  184
      |||||||||||||||||||||| || || |||||||||||||||||||||
seq2  GGAGAGATGGCTCAGTGGTTAACAGCACTGACTGCTCTTCCGAAGGTCCT  245

seq1  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAG  234
       ||||||||||||||||| |||||||||| ||||||||||| ||||||||
seq2  AAGTTCAAATCCCAGCAAGCACATGGTGGATCACAACCACCAGTAATGAG  295

seq1  ATCTGACACCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTCACA  284
      ||||||  ||||||||||| |  ||||||||||||||||||||||| |||
seq2  ATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACA  345

seq1  TATAATAAAATAAATAAATCTTTAAAAA  312
      |||     ||||||||||  ||||||||
seq2  TAT-----AATAAATAAA--TTTAAAAA  366