BAC Information

Click to search

BAC

Clone NameB6Ng01-039H18
Chromosome16 (Build37)
Map Location 70,931,099 - 71,065,672
singlet/doubletdoublet
Overlap geneLOC100039231
Upstream geneEG664930, Gbe1, D16Ertd519e
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039H18.bB6Ng01-039H18.g
ACCDH866745DH866746
length1,2081,134
definitionDH866745|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H18, 5' end.DH866746|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,931,099 - 70,932,321)(71,064,527 - 71,065,672)
sequence
gaattcagtttttaacttccagtacctgtgtttagaacctagtgttcaaa
ggctatttttttgaataaatgaataaatctaatgtgtattttcaatctcc
cccttgcctctgcgccttgaacatttcttatggagaacacaagcttagct
tttcctatcttctctttcatccttcattagaggtactaacttcatcttgc
cctattagatgcaggatttcaaattcctcttcagcctgtgcctttttttt
ccattttaatgtaaatttgccttttcctttggtttccttcatagccattt
tcacacatttgagggatgttctatcctcagttttaagatctctggtcttg
tgaagcgactttggctcatgtttctactcaccaacaaagtcatcagctgg
tgtagatgttttctccatttcatactgtaagtttcattccccaaacaatt
atagcctccatctccattagatttaaacctttgcaaaggaacacttcgaa
aatctcacactaaatgcaaagaaacaatcgtgtgtgacattttctggctc
tcattctttgattctgtaacttttcatctttctattttttctcactgcta
atgcatgttttgttgtcactttccaggttcctactttttttttttttcat
tgtgaagcttagacaccagagactatagtgactttccttatcttcactaa
atgcactttcactgttcggctgaagctttgtttccatagtatagaaatac
tgaaaacacctttaaggattcccccccaacacatacacagatactttcat
ttatgaactaaccatgttaatccacatctaaaatttatttttcaaatgtg
tgtacatgtggctggattgacaagtagctcttccactttgtatccttgag
tatgtttcaggttgacattgactctatttttgctctgaattcatcactac
aatgtaactgatttgcaaatgtcgtatctttatgtatagccctccaatat
ttaattttctttatgctgtaggaacccatttgaggttaaaacaataattc
cttcattaggagaatttaccctggcattaatcaggaagtggaagaattag
gatctagtatttgtatttccaacgctcattctcatttcatttatcaatag
aacctgtttcagtgtaatttttcctctgcctggctggcaggaacaaaaat
tagcaatt
gaattcttcatagaagacataatggaaaaatatgatcatctcatagccac
caaaaagctagaagcaataatgttttgctgagtttgccccagtgacccca
tctcttctaatgatccccacatccagaattaccaaattctcctagtagca
ctacagaattgtgaccaaaagcatgaacgttggagagacttttggaaaca
aacttcaagaaagagaggtagcagccttcctttgtattggcagggtctgt
aacacattgctgggatgggggtctattttatgctcctggagaaaataaac
aatggtattagtctacatccattcaggcacaccttgtaattcaaatttcc
aagagtagagctaaaaagaaaaatagtgataatataatccttactacagt
cagtgcctgtgcgacaacttagaggtatcactcaacatttaccatgatgt
tcaatttagaatacttcatgatataattagcaatgtttagctttcttcaa
tcttaaggagtgttaatgtcataaaaatctgtaaaggtctagagatctat
ccattcttacaagtactataccataacatctttttattttgtgattggtt
ttagtctgaaagagtacttttcagctgcaccaaaaatgttttcaaatgaa
agaacaaataatgctcatttcaatcagaacattattggaatttttataag
aaaataactctgaagtgattactgcattatatacattggacttaattcca
ataattgtagttttggcagaaatattaatattttcttgaaacttaaatgt
ttaaacacatggcagttgttcatcaagtgaacaattttctttagtatctt
agtctgtcttattccagtacttctctatcttaatgtaagaagttgcatga
gattcatatttttcagtagatgattttaatgaattcagtatactggcatt
attagatacatcttgtactctctcatctcttcactcaaatacaattaagt
ttcttttatcagtattttttgaaagttatctatttttttttctttttact
tctcaagagggtttcttgatagatacatcgatccattccattggatggag
agaataaggaaagagacggtaaaagagaaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70931099_70932321
seq2: B6Ng01-039H18.b_45_1252

seq1  GAATTCAGTTTTTAACTTCCAGTACCTGTGTTTAGAACCTAGTGTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTTAACTTCCAGTACCTGTGTTTAGAACCTAGTGTTCAAA  50

seq1  GGCTATTTTTTTGAATAAATGAATAAATCTAATGTGTATTTTCAATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTTTTGAATAAATGAATAAATCTAATGTGTATTTTCAATCTCC  100

seq1  CCCTTGCCTCTGCGCCTTGAACATTTCTTATGGAGAACACAAGCTTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCTCTGCGCCTTGAACATTTCTTATGGAGAACACAAGCTTAGCT  150

seq1  TTTCCTATCTTCTCTTTCATCCTTCATTAGAGGTACTAACTTCATCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATCTTCTCTTTCATCCTTCATTAGAGGTACTAACTTCATCTTGC  200

seq1  CCTATTAGATGCAGGATTTCAAATTCCTCTTCAGCCTGTGCCTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGATGCAGGATTTCAAATTCCTCTTCAGCCTGTGCCTTTTTTTT  250

seq1  CCATTTTAATGTAAATTTGCCTTTTCCTTTGGTTTCCTTCATAGCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAATGTAAATTTGCCTTTTCCTTTGGTTTCCTTCATAGCCATTT  300

seq1  TCACACATTTGAGGGATGTTCTATCCTCAGTTTTAAGATCTCTGGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATTTGAGGGATGTTCTATCCTCAGTTTTAAGATCTCTGGTCTTG  350

seq1  TGAAGCGACTTTGGCTCATGTTTCTACTCACCAACAAAGTCATCAGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCGACTTTGGCTCATGTTTCTACTCACCAACAAAGTCATCAGCTGG  400

seq1  TGTAGATGTTTTCTCCATTTCATACTGTAAGTTTCATTCCCCAAACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTTTTCTCCATTTCATACTGTAAGTTTCATTCCCCAAACAATT  450

seq1  ATAGCCTCCATCTCCATTAGATTTAAACCTTTGCAAAGGAACACTTCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCCATCTCCATTAGATTTAAACCTTTGCAAAGGAACACTTCGAA  500

seq1  AATCTCACACTAAATGCAAAGAAACAATCGTGTGTGACATTTTCTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACACTAAATGCAAAGAAACAATCGTGTGTGACATTTTCTGGCTC  550

seq1  TCATTCTTTGATTCTGTAACTTTTCATCTTTCTATTTTTTCTCACTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTGATTCTGTAACTTTTCATCTTTCTATTTTTTCTCACTGCTA  600

seq1  ATGCATGTTTTGTTGTCACTTTCCAGGTTCCTACTTTTTTTTTTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTTTTGTTGTCACTTTCCAGGTTCCTACTTTTTTTTTTTTTCAT  650

seq1  TGTGAAGCTTAGACACCAGAGACTATAGTGACTTTCCTTATCTTCACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCTTAGACACCAGAGACTATAGTGACTTTCCTTATCTTCACTAA  700

seq1  ATGCACTTTCACTGTTCGGCTGAAGCTTTGTTTCCATAGTATAGAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTTCACTGTTCGGCTGAAGCTTTGTTTCCATAGTATAGAAATAC  750

seq1  TGAAAACACCTTTAAGGATTCCCCCCCAACACATACACAGATACTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACCTTTAAGGATTCCCCCCCAACACATACACAGATACTTTCAT  800

seq1  TTATGAACTAACCATGTTAATCCACATCTAAAATTTATTTTTCAAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACTAACCATGTTAATCCACATCTAAAATTTATTTTTCAAATGTG  850

seq1  TGTACATGTGGCTGGATTGACAAGTAGCTCTTCCACTTTGTATCCTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGGCTGGATTGACAAGTAGCTCTTCCACTTTGTATCCTTGAG  900

seq1  TATGTTTCAGGGTTGACATTGACTCTATTTTTGCTCTGAATTCATCACTA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCA-GGTTGACATTGACTCTATTTTTGCTCTGAATTCATCACTA  949

seq1  CAATGTAACTGATTTGCAAATGTCGTATCTTTATGTATAGCCCTCCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAACTGATTTGCAAATGTCGTATCTTTATGTATAGCCCTCCAATA  999

seq1  TTTAATTTTCTTTATGCTGTAAGAACACAATTTGAGGTTAAAAACAATAA  1050
      ||||||||||||||||||||| |||| | |||||||||| ||||||||||
seq2  TTTAATTTTCTTTATGCTGTAGGAAC-CCATTTGAGGTT-AAAACAATAA  1047

seq1  -TCCTTCATTAAGAGAATTTACCCTGGCATTAATCAGGAAAGTGGAAG-A  1098
       |||||||||| |||||||||||||||||||||||||| ||||||||| |
seq2  TTCCTTCATTAGGAGAATTTACCCTGGCATTAATCAGG-AAGTGGAAGAA  1096

seq1  TTAGTATCTAGTTATTGTAATTCCAACGCTCATTCTCATTTCATTTTATC  1148
      |||| |||||||  ||||| ||||||||||||||||||||||| ||||||
seq2  TTAGGATCTAGTATTTGTATTTCCAACGCTCATTCTCATTTCA-TTTATC  1145

seq1  AAATAAGAACCTTGTATCAGTGTTAATTTTTTTCCCTCTGGCTCTGGCTG  1198
      ||   |||||| ||| |||||| ||||||||   ||||||   |||||||
seq2  AA--TAGAACC-TGTTTCAGTG-TAATTTTT---CCTCTG--CCTGGCTG  1186

seq1  GCAAAGAACAAATATTTAAGCAATT  1223
      || | ||||||| |||  |||||||
seq2  GC-AGGAACAAAAATT--AGCAATT  1208

seq1: chr16_71064527_71065672
seq2: B6Ng01-039H18.g_67_1200 (reverse)

seq1  TTAAATTCTCTTTTTAACCGTTTCTCTTTTCTTATTCTTCTCAATTCCCA  50
      |||| |||||||||  ||||  ||||||| ||||||| |||| ||  |||
seq2  TTAATTTCTCTTTT--ACCG--TCTCTTTCCTTATTC-TCTCCAT--CCA  43

seq1  ATGGAATTGGGATCGATGTA-CTATC-AGGTACCCTCTTGAG-AGTAAAA  97
      |||||||  ||||||||||| ||||| ||  ||||||||||| |||||||
seq2  ATGGAAT--GGATCGATGTATCTATCAAGAAACCCTCTTGAGAAGTAAAA  91

seq1  AGAAAAAAAAAATAGGAATAACTTTC-AAAAATACTTGATAAAAGAAACT  146
      || ||||||||||||  ||||||||| |||||||| ||||||||||||||
seq2  AG-AAAAAAAAATAG--ATAACTTTCAAAAAATAC-TGATAAAAGAAACT  137

seq1  TAATTGTATTTTGAGTGAAGAGATGAGAGAGTACAAAGATGTTATCTAAT  196
      |||||||| ||||||||||||||||||||||||| |||||| ||||||||
seq2  TAATTGTA-TTTGAGTGAAGAGATGAGAGAGTAC-AAGATG-TATCTAAT  184

seq1  AATGCCAGTATACTGAATTCATTAAAATCATCTACCTGAAAATATGAATC  246
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AATGCCAGTATACTGAATTCATTAAAATCATCTACTGAAAAATATGAATC  234

seq1  TCATGCAACTTCTTACATTAAGATAGAGAAGTACTGGAATAAGACAGACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAACTTCTTACATTAAGATAGAGAAGTACTGGAATAAGACAGACT  284

seq1  AAGATACTAAAGAAAATTGTTCACTTGATGAACAACTGCCATGTGTTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTAAAGAAAATTGTTCACTTGATGAACAACTGCCATGTGTTTAA  334

seq1  ACATTTAAGTTTCAAGAAAATATTAATATTTCTGCCAAAACTACAATTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAGTTTCAAGAAAATATTAATATTTCTGCCAAAACTACAATTAT  384

seq1  TGGAATTAAGTCCAATGTATATAATGCAGTAATCACTTCAGAGTTATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAGTCCAATGTATATAATGCAGTAATCACTTCAGAGTTATTTT  434

seq1  CTTATAAAAATTCCAATAATGTTCTGATTGAAATGAGCATTATTTGTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAAATTCCAATAATGTTCTGATTGAAATGAGCATTATTTGTTCT  484

seq1  TTCATTTGAAAACATTTTTGGTGCAGCTGAAAAGTACTCTTTCAGACTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGAAAACATTTTTGGTGCAGCTGAAAAGTACTCTTTCAGACTAA  534

seq1  AACCAATCACAAAATAAAAAGATGTTATGGTATAGTACTTGTAAGAATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCACAAAATAAAAAGATGTTATGGTATAGTACTTGTAAGAATGG  584

seq1  ATAGATCTCTAGACCTTTACAGATTTTTATGACATTAACACTCCTTAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTCTAGACCTTTACAGATTTTTATGACATTAACACTCCTTAAGA  634

seq1  TTGAAGAAAGCTAAACATTGCTAATTATATCATGAAGTATTCTAAATTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAGCTAAACATTGCTAATTATATCATGAAGTATTCTAAATTGA  684

seq1  ACATCATGGTAAATGTTGAGTGATACCTCTAAGTTGTCGCACAGGCACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGGTAAATGTTGAGTGATACCTCTAAGTTGTCGCACAGGCACTG  734

seq1  ACTGTAGTAAGGATTATATTATCACTATTTTTCTTTTTAGCTCTACTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGTAAGGATTATATTATCACTATTTTTCTTTTTAGCTCTACTCTT  784

seq1  GGAAATTTGAATTACAAGGTGTGCCTGAATGGATGTAGACTAATACCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGAATTACAAGGTGTGCCTGAATGGATGTAGACTAATACCATT  834

seq1  GTTTATTTTCTCCAGGAGCATAAAATAGACCCCCATCCCAGCAATGTGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTCTCCAGGAGCATAAAATAGACCCCCATCCCAGCAATGTGTT  884

seq1  ACAGACCCTGCCAATACAAAGGAAGGCTGCTACCTCTCTTTCTTGAAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTGCCAATACAAAGGAAGGCTGCTACCTCTCTTTCTTGAAGTT  934

seq1  TGTTTCCAAAAGTCTCTCCAACGTTCATGCTTTTGGTCACAATTCTGTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAAAGTCTCTCCAACGTTCATGCTTTTGGTCACAATTCTGTAG  984

seq1  TGCTACTAGGAGAATTTGGTAATTCTGGATGTGGGGATCATTAGAAGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTAGGAGAATTTGGTAATTCTGGATGTGGGGATCATTAGAAGAGA  1034

seq1  TGGGGTCACTGGGGCAAACTCAGCAAAACATTATTGCTTCTAGCTTTTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCACTGGGGCAAACTCAGCAAAACATTATTGCTTCTAGCTTTTTG  1084

seq1  GTGGCTATGAGATGATCATATTTTTCCATTATGTCTTCTATGAAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTATGAGATGATCATATTTTTCCATTATGTCTTCTATGAAGAATTC  1134